This file is indexed.

/usr/share/avogadro/builder/amino/l-phe.zmat is in avogadro-data 1.2.0-3.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

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N    0.000000    0.000000    0.000000     0   0   0   -0.244958  N 
C    1.461709    0.000000    0.000000     1   0   0    0.091600  CA
C    1.537853  106.638500    0.000000     2   1   0    0.218041  C 
O    1.230661  122.976863  340.487290     3   2   1   -0.287197  O 
C    1.537607  111.283301  238.785057     2   1   3   -0.003643  CB
C    1.511324  113.232887  201.308643     5   2   1   -0.045419  CG
C    1.401126  120.927051  256.287062     6   5   2   -0.058511  CD2
C    1.395615  120.346144  178.830399     7   6   5   -0.061501  CE2
C    1.393841  120.096714    0.450729     8   7   6   -0.061742  CZ
C    1.393512  119.981312  359.997249     9   8   7   -0.061501  CE1
C    1.394960  120.040389  359.688782    10   9   8   -0.058511  CD1
H    1.016627  117.346698   18.039087     1   2   3    0.141371  H  
H    1.096951  107.420485  116.250431     2   1   3    0.056017  HA 
H    1.098185  110.299900   77.823589     5   2   1    0.033301  HB1
H    1.098229  110.518262  321.897172     5   2   1    0.033301  HB2
H    1.088190  120.513449  358.949434     7   6   5    0.062030  HD2
H    1.087119  119.992780  179.998527     8   7   6    0.061766  HE2
H    1.086988  120.061077  179.458719     9   8   7    0.061758  HZ 
H    1.087166  120.075511  179.313896    10   9   8    0.061766  HE1
H    1.089850  119.303202  179.689743    11  10   9    0.062030  HD1