This file is indexed.

/usr/share/avogadro/builder/amino/l-pyl.zmat is in avogadro-data 1.2.0-3.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

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N    0.000000    0.000000    0.000000     0   0   0   -0.245286  N
C    1.463765    0.000000    0.000000     1   0   0    0.087661  CA
C    1.542578  106.300047    0.000000     2   1   0    0.217713  C
O    1.233129  122.712481  354.921440     3   2   1   -0.287208  O
C    1.536890  110.769386  237.913698     2   1   3   -0.028915
C    1.532763  112.298313  218.169904     5   2   1   -0.049780
C    1.530821  111.265862  170.162796     6   5   2   -0.037328
C    1.528803  112.482071  181.263586     7   6   5    0.011637
N    1.434924  112.399650  262.932924     8   7   6   -0.313970
H    1.096288  107.171747  115.751101     2   1   3    0.055690
H    1.097442  110.668602   95.630779     5   2   1    0.028494
H    1.097342  109.994173  338.607139     5   2   1    0.028494
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H    1.092219  109.920204  292.151099     6   5   2    0.026637
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H    1.095192  109.167670  145.733337     8   7   6    0.046187
H    1.095338  111.809759   26.425596     8   7   6    0.046187
C    1.370964  126.258065   89.170460     9   8   7    0.231886
H    1.026754  122.009781  251.919110     9   8   7    0.148724
O    1.230290  123.758762  351.272664    19   9   8   -0.274034
C    1.543455  112.478317  173.785870    19   9   8    0.104223
C    2.390761  111.053222   58.792302    22  19   9   -0.029963
C    1.517110   38.705869  103.110230    23  22  19   -0.016921
H    1.100822  108.009262  113.818678    24  23  22    0.031886
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C    1.492842   67.877801  251.673122    23  22  19    0.043401
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H    1.094128  141.659540  154.373201    23  22  19    0.028445
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H    1.094822  112.029910   56.323223    26  24  23    0.023303
H    1.015951  116.659895   13.870656     1   2   3    0.141360