This file is indexed.

/usr/share/avogadro/builder/amino/l-tyr.zmat is in avogadro-data 1.2.0-3.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

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N    0.000000    0.000000    0.000000     0   0   0   -0.244958  N 
C    1.461658    0.000000    0.000000     1   0   0    0.091600  CA
C    1.538177  106.652478    0.000000     2   1   0    0.218041  C 
O    1.230602  122.922668  340.894490     3   2   1   -0.287197  O 
C    1.537798  111.274710  238.724246     2   1   3   -0.003640  CB
H    1.098209  110.553874  322.220086     5   2   1    0.033301  HB1
H    1.098161  110.310355   78.164913     5   2   1    0.033301  HB2
C    1.511562  113.221693  201.659353     5   2   1   -0.045196  CG
C    1.401382  120.857160  256.417067     8   5   2   -0.055064  CD2
H    1.088176  120.640967  358.854167     9   8   5    0.062142  HD2
C    1.395277  120.282152  178.629986     9   8   5   -0.019921  CE2
H    1.086373  120.298075  180.174071    11   9   8    0.065402  HE2
C    1.389775  119.758033    0.601785    11   9   8    0.116879  CZ
C    1.390413  120.850227  359.896421    13  11   9   -0.019921  CE1
H    1.085600  121.365394  179.608623    14  13  11    0.065402  HE1
C    1.396108  119.421973  359.702362    14  13  11   -0.055064  CD1
H    1.089967  119.329656  179.834170    16  14  13    0.062142  HD1
O    1.363211  117.734196  179.845122    13  11   9   -0.506769  OH
H    0.971482  108.546007  183.568957    18  13  11    0.292132  HH 
H    1.096925  107.375427  116.219904     2   1   3    0.056017  HA 
H    1.016774  117.336714   17.397281     1   2   3    0.141371  H