/usr/share/perl5/Bio/Tradis/Analysis/Exceptions.pm is in bio-tradis 1.3.3+dfsg-3.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 | package Bio::Tradis::Analysis::Exceptions;
# ABSTRACT: Custom exceptions
=head1 SYNOPSIS
Basic exception catcher
=cut
use Exception::Class (
Bio::Tradis::Analysis::Exceptions::FailedToOpenAlignmentSlice => { description => 'Couldnt get reads from alignment slice. Error with Samtools or BAM' },
Bio::Tradis::Analysis::Exceptions::FailedToOpenExpressionResultsSpreadsheetForWriting => { description => 'Couldnt write out the results for expression' },
Bio::Tradis::Analysis::Exceptions::InvalidInputFiles => { description => 'Invalid inputs, sequence names or lengths are incorrect' },
Bio::Tradis::Analysis::Exceptions::FailedToCreateNewBAM => { description => 'Couldnt create a new bam file' },
Bio::Tradis::Analysis::Exceptions::FailedToCreateMpileup => { description => 'Couldnt create an mpileup' },
Bio::Tradis::Analysis::Exceptions::FailedToOpenFeaturesTabFileForWriting => { description => 'Couldnt write tab file' },
Bio::Tradis::Analysis::Exceptions::FileNotFound => { description => 'Couldnt find file' },
);
1;
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