/usr/include/bm/bmalgo_impl.h is in bmagic 3.7.0-3.
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1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634 1635 | #ifndef BMALGO_IMPL__H__INCLUDED__
#define BMALGO_IMPL__H__INCLUDED__
/*
Copyright(c) 2002-2010 Anatoliy Kuznetsov(anatoliy_kuznetsov at yahoo.com)
Permission is hereby granted, free of charge, to any person
obtaining a copy of this software and associated documentation
files (the "Software"), to deal in the Software without restriction,
including without limitation the rights to use, copy, modify, merge,
publish, distribute, sublicense, and/or sell copies of the Software,
and to permit persons to whom the Software is furnished to do so,
subject to the following conditions:
The above copyright notice and this permission notice shall be included
in all copies or substantial portions of the Software.
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM,
DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE,
ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
OTHER DEALINGS IN THE SOFTWARE.
For more information please visit: http://bmagic.sourceforge.net
*/
#ifdef _MSC_VER
#pragma warning( push )
#pragma warning( disable : 4311 4312 4127)
#endif
#include "bmdef.h"
#include "bmutil.h"
namespace bm
{
/*! \defgroup setalgo Set algorithms
* Set algorithms
* \ingroup bmagic
*/
/*! \defgroup distance Distance metrics
* Algorithms to compute binary distance metrics
* \ingroup setalgo
*/
/*!
\brief Distance metrics codes defined for vectors A and B
\ingroup distance
*/
enum distance_metric
{
COUNT_AND = set_COUNT_AND, //!< (A & B).count()
COUNT_XOR = set_COUNT_XOR, //!< (A ^ B).count()
COUNT_OR = set_COUNT_OR, //!< (A | B).count()
COUNT_SUB_AB = set_COUNT_SUB_AB, //!< (A - B).count()
COUNT_SUB_BA = set_COUNT_SUB_BA, //!< (B - A).count()
COUNT_A = set_COUNT_A, //!< A.count()
COUNT_B = set_COUNT_B //!< B.count()
};
/**
Convert set operation into compatible distance metric
\ingroup distance
*/
inline
distance_metric operation2metric(set_operation op)
{
BM_ASSERT(is_const_set_operation(op));
if (op == set_COUNT) op = set_COUNT_B;
// distance metric is created as a set operation sub-class
// simple cast will work to convert
return (distance_metric) op;
}
/*!
\brief Distance metric descriptor, holds metric code and result.
\sa distance_operation
*/
struct distance_metric_descriptor
{
distance_metric metric;
bm::id_t result;
distance_metric_descriptor(distance_metric m)
: metric(m),
result(0)
{}
distance_metric_descriptor()
: metric(bm::COUNT_XOR),
result(0)
{}
/*!
\brief Sets metric result to 0
*/
void reset()
{
result = 0;
}
};
/*!
\brief Internal function computes different distance metrics.
\internal
\ingroup distance
*/
inline
void combine_count_operation_with_block(const bm::word_t* blk,
const bm::word_t* arg_blk,
distance_metric_descriptor* dmit,
distance_metric_descriptor* dmit_end)
{
gap_word_t* g1 = BMGAP_PTR(blk);
gap_word_t* g2 = BMGAP_PTR(arg_blk);
unsigned gap = BM_IS_GAP(blk);
unsigned arg_gap = BM_IS_GAP(arg_blk);
if (gap) // first block GAP-type
{
if (arg_gap) // both blocks GAP-type
{
for (distance_metric_descriptor* it = dmit;it < dmit_end; ++it)
{
distance_metric_descriptor& dmd = *it;
switch (dmd.metric)
{
case bm::COUNT_AND:
dmd.result += gap_count_and(g1, g2);
break;
case bm::COUNT_OR:
dmd.result += gap_count_or(g1, g2);
break;
case bm::COUNT_SUB_AB:
dmd.result += gap_count_sub(g1, g2);
break;
case bm::COUNT_SUB_BA:
dmd.result += gap_count_sub(g2, g1);
break;
case bm::COUNT_XOR:
dmd.result += gap_count_xor(g1, g2);
break;
case bm::COUNT_A:
dmd.result += gap_bit_count(g1);
break;
case bm::COUNT_B:
dmd.result += gap_bit_count(g2);
break;
} // switch
} // for it
return;
}
else // first block - GAP, argument - BITSET
{
for (distance_metric_descriptor* it = dmit;it < dmit_end; ++it)
{
distance_metric_descriptor& dmd = *it;
switch (dmd.metric)
{
case bm::COUNT_AND:
if (arg_blk)
dmd.result += gap_bitset_and_count(arg_blk, g1);
break;
case bm::COUNT_OR:
if (!arg_blk)
dmd.result += gap_bit_count(g1);
else
dmd.result += gap_bitset_or_count(arg_blk, g1);
break;
case bm::COUNT_SUB_AB:
{
bm::word_t BM_ALIGN16 temp_bit_blk[bm::set_block_size] BM_ALIGN16ATTR;
gap_convert_to_bitset((bm::word_t*) temp_bit_blk, g1);
dmd.result +=
bit_operation_sub_count((bm::word_t*)temp_bit_blk,
((bm::word_t*)temp_bit_blk) + bm::set_block_size,
arg_blk);
}
break;
case bm::COUNT_SUB_BA:
dmd.metric = bm::COUNT_SUB_AB; // recursive call to SUB_AB
combine_count_operation_with_block(arg_blk,
blk,
it, it+1);
dmd.metric = bm::COUNT_SUB_BA; // restore status quo
break;
case bm::COUNT_XOR:
if (!arg_blk)
dmd.result += gap_bit_count(g1);
else
dmd.result += gap_bitset_xor_count(arg_blk, g1);
break;
case bm::COUNT_A:
if (g1)
dmd.result += gap_bit_count(g1);
break;
case bm::COUNT_B:
if (arg_blk)
{
dmd.result +=
bit_block_calc_count(arg_blk,
arg_blk + bm::set_block_size);
}
break;
} // switch
} // for it
return;
}
}
else // first block is BITSET-type
{
if (arg_gap) // second argument block is GAP-type
{
for (distance_metric_descriptor* it = dmit;it < dmit_end; ++it)
{
distance_metric_descriptor& dmd = *it;
switch (dmd.metric)
{
case bm::COUNT_AND:
if (blk)
dmd.result += gap_bitset_and_count(blk, g2);
break;
case bm::COUNT_OR:
if (!blk)
dmd.result += gap_bit_count(g2);
else
dmd.result += gap_bitset_or_count(blk, g2);
break;
case bm::COUNT_SUB_AB:
if (blk)
dmd.result += gap_bitset_sub_count(blk, g2);
break;
case bm::COUNT_SUB_BA:
dmd.metric = bm::COUNT_SUB_AB; // recursive call to SUB_AB
combine_count_operation_with_block(arg_blk,
//arg_gap,
blk,
//gap,
it, it+1);
dmd.metric = bm::COUNT_SUB_BA; // restore status quo
break;
case bm::COUNT_XOR:
if (!blk)
dmd.result += gap_bit_count(g2);
else
dmd.result += gap_bitset_xor_count(blk, g2);
break;
case bm::COUNT_A:
if (blk)
{
dmd.result +=
bit_block_calc_count(blk,
blk + bm::set_block_size);
}
break;
case bm::COUNT_B:
if (g2)
dmd.result += gap_bit_count(g2);
break;
} // switch
} // for it
return;
}
}
// --------------------------------------------
//
// Here we combine two plain bitblocks
for (distance_metric_descriptor* it = dmit; it < dmit_end; ++it)
{
distance_metric_descriptor& dmd = *it;
bit_operation_count_func_type gfunc =
operation_functions<true>::bit_operation_count(dmd.metric);
if (gfunc)
{
dmd.result += (*gfunc)(blk, blk + bm::set_block_size, arg_blk);
}
else
{
switch (dmd.metric)
{
case bm::COUNT_A:
if (blk)
dmd.result += bit_block_calc_count(blk, blk + bm::set_block_size);
break;
case bm::COUNT_B:
if (arg_blk)
dmd.result +=
bit_block_calc_count(arg_blk,
arg_blk + bm::set_block_size);
break;
default:
BM_ASSERT(0);
} // switch
}
} // for it
}
/*!
\brief Internal function computes AND distance.
\internal
\ingroup distance
*/
inline
unsigned combine_count_and_operation_with_block(const bm::word_t* blk,
const bm::word_t* arg_blk)
{
unsigned gap = BM_IS_GAP(blk);
unsigned arg_gap = BM_IS_GAP(arg_blk);
if (gap) // first block GAP-type
{
if (arg_gap) // both blocks GAP-type
{
return gap_count_and(BMGAP_PTR(blk), BMGAP_PTR(arg_blk));
}
else // first block - GAP, argument - BITSET
{
return gap_bitset_and_count(arg_blk, BMGAP_PTR(blk));
}
}
else // first block is BITSET-type
{
if (arg_gap) // second argument block is GAP-type
{
return gap_bitset_and_count(blk, BMGAP_PTR(arg_blk));
}
}
// --------------------------------------------
// Here we combine two plain bitblocks
return bit_operation_and_count(blk, blk + (bm::set_block_size), arg_blk);
}
/*!
\brief Internal function computes different existense of distance metric.
\internal
\ingroup distance
*/
inline
void combine_any_operation_with_block(const bm::word_t* blk,
unsigned gap,
const bm::word_t* arg_blk,
int arg_gap,
distance_metric_descriptor* dmit,
distance_metric_descriptor* dmit_end)
{
gap_word_t* res=0;
gap_word_t* g1 = BMGAP_PTR(blk);
gap_word_t* g2 = BMGAP_PTR(arg_blk);
if (gap) // first block GAP-type
{
if (arg_gap) // both blocks GAP-type
{
gap_word_t tmp_buf[bm::gap_max_buff_len * 3]; // temporary result
for (distance_metric_descriptor* it = dmit;it < dmit_end; ++it)
{
distance_metric_descriptor& dmd = *it;
if (dmd.result)
{
continue;
}
res = 0;
unsigned dsize = 0;
switch (dmd.metric)
{
case bm::COUNT_AND:
dmd.result += gap_operation_any_and(g1, g2);
break;
case bm::COUNT_OR:
res = gap_operation_or(g1, g2, tmp_buf, dsize);
break;
case bm::COUNT_SUB_AB:
dmd.result += gap_operation_any_sub(g1, g2);
break;
case bm::COUNT_SUB_BA:
dmd.result += gap_operation_any_sub(g2, g1);
break;
case bm::COUNT_XOR:
dmd.result += gap_operation_any_xor(g1, g2);
break;
case bm::COUNT_A:
res = g1;
break;
case bm::COUNT_B:
res = g2;
break;
} // switch
if (res)
dmd.result += !gap_is_all_zero(res, bm::gap_max_bits);
} // for it
return;
}
else // first block - GAP, argument - BITSET
{
for (distance_metric_descriptor* it = dmit;it < dmit_end; ++it)
{
distance_metric_descriptor& dmd = *it;
if (dmd.result)
{
continue;
}
switch (dmd.metric)
{
case bm::COUNT_AND:
if (arg_blk)
dmd.result += gap_bitset_and_any(arg_blk, g1);
break;
case bm::COUNT_OR:
if (!arg_blk)
dmd.result += !gap_is_all_zero(g1, bm::gap_max_bits);
else
dmd.result += gap_bitset_or_any(arg_blk, g1);
break;
case bm::COUNT_SUB_AB:
{
bm::word_t BM_ALIGN16 temp_blk[bm::set_block_size] BM_ALIGN16ATTR;
gap_convert_to_bitset((bm::word_t*) temp_blk, g1);
dmd.result +=
bit_operation_sub_any((bm::word_t*)temp_blk,
((bm::word_t*)temp_blk) + bm::set_block_size,
arg_blk);
}
break;
case bm::COUNT_SUB_BA:
dmd.metric = bm::COUNT_SUB_AB; // recursive call to SUB_AB
combine_any_operation_with_block(arg_blk,
arg_gap,
blk,
gap,
it, it+1);
dmd.metric = bm::COUNT_SUB_BA; // restore status quo
break;
case bm::COUNT_XOR:
if (!arg_blk)
dmd.result += !gap_is_all_zero(g1, bm::gap_max_bits);
else
dmd.result += gap_bitset_xor_any(arg_blk, g1);
break;
case bm::COUNT_A:
if (g1)
dmd.result += !gap_is_all_zero(g1, bm::gap_max_bits);
break;
case bm::COUNT_B:
if (arg_blk)
{
dmd.result +=
!bit_is_all_zero((bm::wordop_t*)arg_blk,
(bm::wordop_t*)(arg_blk + bm::set_block_size));
}
break;
} // switch
} // for it
return;
}
}
else // first block is BITSET-type
{
if (arg_gap) // second argument block is GAP-type
{
for (distance_metric_descriptor* it = dmit;it < dmit_end; ++it)
{
distance_metric_descriptor& dmd = *it;
if (dmd.result)
{
continue;
}
switch (dmd.metric)
{
case bm::COUNT_AND:
if (blk)
dmd.result += gap_bitset_and_any(blk, g2);
break;
case bm::COUNT_OR:
if (!blk)
dmd.result += !gap_is_all_zero(g2, bm::gap_max_bits);
else
dmd.result += gap_bitset_or_any(blk, g2);
break;
case bm::COUNT_SUB_AB:
if (blk)
dmd.result += gap_bitset_sub_any(blk, g2);
break;
case bm::COUNT_SUB_BA:
dmd.metric = bm::COUNT_SUB_AB; // recursive call to SUB_AB
combine_any_operation_with_block(arg_blk,
arg_gap,
blk,
gap,
it, it+1);
dmd.metric = bm::COUNT_SUB_BA; // restore status quo
break;
case bm::COUNT_XOR:
if (!blk)
dmd.result += !gap_is_all_zero(g2, bm::gap_max_bits);
else
dmd.result += gap_bitset_xor_any(blk, g2);
break;
case bm::COUNT_A:
if (blk)
{
dmd.result+=
!bit_is_all_zero((bm::wordop_t*)blk,
(bm::wordop_t*)blk + bm::set_block_size);
}
break;
case bm::COUNT_B:
if (g2)
dmd.result += !gap_is_all_zero(g2, bm::gap_max_bits);
break;
} // switch
} // for it
return;
}
}
// --------------------------------------------
//
// Here we combine two plain bitblocks
const bm::word_t* blk_end;
const bm::word_t* arg_end;
blk_end = blk + (bm::set_block_size);
arg_end = arg_blk + (bm::set_block_size);
for (distance_metric_descriptor* it = dmit; it < dmit_end; ++it)
{
distance_metric_descriptor& dmd = *it;
if (dmd.result)
{
continue;
}
switch (dmd.metric)
{
case bm::COUNT_AND:
dmd.result +=
bit_operation_and_any(blk, blk_end, arg_blk);
break;
case bm::COUNT_OR:
dmd.result +=
bit_operation_or_any(blk, blk_end, arg_blk);
break;
case bm::COUNT_SUB_AB:
dmd.result +=
bit_operation_sub_any(blk, blk_end, arg_blk);
break;
case bm::COUNT_SUB_BA:
dmd.result +=
bit_operation_sub_any(arg_blk, arg_end, blk);
break;
case bm::COUNT_XOR:
dmd.result +=
bit_operation_xor_any(blk, blk_end, arg_blk);
break;
case bm::COUNT_A:
if (blk)
dmd.result += !bit_is_all_zero((bm::wordop_t*)blk,
(bm::wordop_t*)blk_end);
break;
case bm::COUNT_B:
if (arg_blk)
dmd.result += !bit_is_all_zero((bm::wordop_t*)arg_blk,
(bm::wordop_t*)arg_end);
break;
} // switch
} // for it
}
/*!
Convenience internal function to compute combine count for one metric
\internal
\ingroup distance
*/
inline
unsigned combine_count_operation_with_block(const bm::word_t* blk,
const bm::word_t* arg_blk,
distance_metric metric)
{
distance_metric_descriptor dmd(metric);
combine_count_operation_with_block(blk, //gap,
arg_blk, //arg_gap,
//temp_blk,
&dmd, &dmd+1);
return dmd.result;
}
/*!
Convenience internal function to compute combine any for one metric
\internal
\ingroup distance
*/
inline
unsigned combine_any_operation_with_block(const bm::word_t* blk,
unsigned gap,
const bm::word_t* arg_blk,
int arg_gap,
distance_metric metric)
{
distance_metric_descriptor dmd(metric);
combine_any_operation_with_block(blk, gap,
arg_blk, arg_gap,
&dmd, &dmd+1);
return dmd.result;
}
/*!
\brief Staging function for distance operation
\return temp block allocated (or NULL)
\internal
*/
inline
void distance_stage(const distance_metric_descriptor* dmit,
const distance_metric_descriptor* dmit_end,
bool* is_all_and)
{
for (const distance_metric_descriptor* it = dmit; it < dmit_end; ++it)
{
if (it->metric != bm::COUNT_AND)
{
*is_all_and = false;
}
} // for
}
/*!
\brief Distance computing template function.
Function receives two bitvectors and an array of distance metrics
(metrics pipeline). Function computes all metrics saves result into
corresponding pipeline results (distance_metric_descriptor::result)
An important detail is that function reuses metric descriptors,
incrementing received values. It allows you to accumulate results
from different calls in the pipeline.
\param bv1 - argument bitvector 1 (A)
\param bv2 - argument bitvector 2 (B)
\param dmit - pointer to first element of metric descriptors array
Input-Output parameter, receives metric code as input,
computation is added to "result" field
\param dmit_end - pointer to (last+1) element of metric descriptors array
\ingroup distance
*/
template<class BV>
void distance_operation(const BV& bv1,
const BV& bv2,
distance_metric_descriptor* dmit,
distance_metric_descriptor* dmit_end)
{
const typename BV::blocks_manager_type& bman1 = bv1.get_blocks_manager();
const typename BV::blocks_manager_type& bman2 = bv2.get_blocks_manager();
bool is_all_and = true; // flag is distance operation is just COUNT_AND
distance_stage(dmit, dmit_end, &is_all_and);
bm::word_t*** blk_root = bman1.get_rootblock();
unsigned block_idx = 0;
unsigned i, j;
const bm::word_t* blk;
const bm::word_t* arg_blk;
BM_SET_MMX_GUARD
unsigned effective_top_block_size = bman1.effective_top_block_size();
unsigned ebs2 = bman2.effective_top_block_size();
if (ebs2 > effective_top_block_size)
effective_top_block_size = ebs2;
for (i = 0; i < effective_top_block_size; ++i)
{
bm::word_t** blk_blk = blk_root[i];
if (blk_blk == 0) // not allocated
{
// AND operation requested - we can skip this portion here
if (is_all_and)
{
block_idx += bm::set_array_size;
continue;
}
const bm::word_t* const* bvbb = bman2.get_topblock(i);
if (bvbb == 0)
{
block_idx += bm::set_array_size;
continue;
}
blk = 0;
for (j = 0; j < bm::set_array_size; ++j,++block_idx)
{
arg_blk = bman2.get_block(i, j);
if (!arg_blk)
continue;
combine_count_operation_with_block(blk,
arg_blk,
dmit, dmit_end);
} // for j
continue;
}
for (j = 0; j < bm::set_array_size; ++j, ++block_idx)
{
blk = blk_blk[j];
if (blk == 0 && is_all_and)
continue;
arg_blk = bman2.get_block(i, j);
if (blk == 0 && arg_blk == 0)
continue;
combine_count_operation_with_block(blk,
arg_blk,
dmit, dmit_end);
} // for j
} // for i
}
/*!
\brief Distance AND computing template function.
\param bv1 - argument bitvector 1 (A)
\param bv2 - argument bitvector 2 (B)
\ingroup distance
*/
template<class BV>
unsigned distance_and_operation(const BV& bv1,
const BV& bv2)
{
const typename BV::blocks_manager_type& bman1 = bv1.get_blocks_manager();
const typename BV::blocks_manager_type& bman2 = bv2.get_blocks_manager();
bm::word_t*** blk_root = bman1.get_rootblock();
bm::word_t*** blk_root_arg = bman2.get_rootblock();
unsigned count = 0;
BM_SET_MMX_GUARD
unsigned effective_top_block_size =
bm::min_value(bman1.effective_top_block_size(),
bman2.effective_top_block_size());
for (unsigned i = 0; i < effective_top_block_size; ++i)
{
bm::word_t** blk_blk;
bm::word_t** blk_blk_arg;
if ((blk_blk = blk_root[i]) == 0 || (blk_blk_arg= blk_root_arg[i]) == 0)
{
continue;
}
for (unsigned j = 0; j < bm::set_array_size; j+=4)
{
(blk_blk[j] && blk_blk_arg[j]) ?
count += combine_count_and_operation_with_block(blk_blk[j],blk_blk_arg[j])
:0;
(blk_blk[j+1] && blk_blk_arg[j+1]) ?
count += combine_count_and_operation_with_block(blk_blk[j+1],blk_blk_arg[j+1])
:0;
(blk_blk[j+2] && blk_blk_arg[j+2]) ?
count += combine_count_and_operation_with_block(blk_blk[j+2],blk_blk_arg[j+2])
:0;
(blk_blk[j+3] && blk_blk_arg[j+3]) ?
count += combine_count_and_operation_with_block(blk_blk[j+3],blk_blk_arg[j+3])
:0;
} // for j
} // for i
return count;
}
/*!
\brief Distance screening template function.
Function receives two bitvectors and an array of distance metrics
(metrics pipeline). Function computes possybility of a metric(any bit)
saves result into corresponding pipeline results
(distance_metric_descriptor::result)
An important detail is that function reuses metric descriptors,
incrementing received values. It allows you to accumulate results
from different calls in the pipeline.
\param bv1 - argument bitvector 1 (A)
\param bv2 - argument bitvector 2 (B)
\param dmit - pointer to first element of metric descriptors array
Input-Output parameter, receives metric code as input,
computation is added to "result" field
\param dmit_end - pointer to (last+1) element of metric descriptors array
\ingroup distance
*/
template<class BV>
void distance_operation_any(const BV& bv1,
const BV& bv2,
distance_metric_descriptor* dmit,
distance_metric_descriptor* dmit_end)
{
const typename BV::blocks_manager_type& bman1 = bv1.get_blocks_manager();
const typename BV::blocks_manager_type& bman2 = bv2.get_blocks_manager();
bool is_all_and = true; // flag is distance operation is just COUNT_AND
//bm::word_t* temp_blk =
distance_stage(dmit, dmit_end, &is_all_and);
bm::word_t*** blk_root = bman1.get_rootblock();
unsigned block_idx = 0;
unsigned i, j;
const bm::word_t* blk;
const bm::word_t* arg_blk;
bool blk_gap;
bool arg_gap;
BM_SET_MMX_GUARD
unsigned effective_top_block_size = bman1.effective_top_block_size();
unsigned ebs2 = bman2.effective_top_block_size();
if (ebs2 > effective_top_block_size)
effective_top_block_size = ebs2;
for (i = 0; i < effective_top_block_size; ++i)
{
bm::word_t** blk_blk = blk_root[i];
if (blk_blk == 0) // not allocated
{
// AND operation requested - we can skip this portion here
if (is_all_and)
{
block_idx += bm::set_array_size;
continue;
}
const bm::word_t* const* bvbb = bman2.get_topblock(i);
if (bvbb == 0)
{
block_idx += bm::set_array_size;
continue;
}
blk = 0;
blk_gap = false;
for (j = 0; j < bm::set_array_size; ++j,++block_idx)
{
arg_blk = bman2.get_block(i, j);
arg_gap = BM_IS_GAP(arg_blk);
if (!arg_blk)
continue;
combine_any_operation_with_block(blk, blk_gap,
arg_blk, arg_gap,
dmit, dmit_end);
// check if all distance requests alredy resolved
bool all_resolved = false;
distance_metric_descriptor* it=dmit;
do
{
if (!it->result)
{
all_resolved = false;
break;
}
++it;
} while (it < dmit_end);
if (all_resolved)
return;
} // for j
continue;
}
for (j = 0; j < bm::set_array_size; ++j, ++block_idx)
{
blk = blk_blk[j];
if (blk == 0 && is_all_and)
continue;
arg_blk = bman2.get_block(i, j);
if (blk == 0 && arg_blk == 0)
continue;
arg_gap = BM_IS_GAP(arg_blk);
blk_gap = BM_IS_GAP(blk);
combine_any_operation_with_block(blk, blk_gap,
arg_blk, arg_gap,
dmit, dmit_end);
// check if all distance requests alredy resolved
bool all_resolved = false;
distance_metric_descriptor* it=dmit;
do
{
if (!it->result)
{
all_resolved = false;
break;
}
++it;
} while (it < dmit_end);
if (all_resolved)
return;
} // for j
} // for i
}
/*!
\brief Computes bitcount of AND operation of two bitsets
\param bv1 - Argument bit-vector.
\param bv2 - Argument bit-vector.
\return bitcount of the result
\ingroup distance
*/
template<class BV>
bm::id_t count_and(const BV& bv1, const BV& bv2)
{
return distance_and_operation(bv1, bv2);
}
/*!
\brief Computes if there is any bit in AND operation of two bitsets
\param bv1 - Argument bit-vector.
\param bv2 - Argument bit-vector.
\return non zero value if there is any bit
\ingroup distance
*/
template<class BV>
bm::id_t any_and(const BV& bv1, const BV& bv2)
{
distance_metric_descriptor dmd(bm::COUNT_AND);
distance_operation_any(bv1, bv2, &dmd, &dmd+1);
return dmd.result;
}
/*!
\brief Computes bitcount of XOR operation of two bitsets
\param bv1 - Argument bit-vector.
\param bv2 - Argument bit-vector.
\return bitcount of the result
\ingroup distance
*/
template<class BV>
bm::id_t count_xor(const BV& bv1, const BV& bv2)
{
distance_metric_descriptor dmd(bm::COUNT_XOR);
distance_operation(bv1, bv2, &dmd, &dmd+1);
return dmd.result;
}
/*!
\brief Computes if there is any bit in XOR operation of two bitsets
\param bv1 - Argument bit-vector.
\param bv2 - Argument bit-vector.
\return non zero value if there is any bit
\ingroup distance
*/
template<class BV>
bm::id_t any_xor(const BV& bv1, const BV& bv2)
{
distance_metric_descriptor dmd(bm::COUNT_XOR);
distance_operation_any(bv1, bv2, &dmd, &dmd+1);
return dmd.result;
}
/*!
\brief Computes bitcount of SUB operation of two bitsets
\param bv1 - Argument bit-vector.
\param bv2 - Argument bit-vector.
\return bitcount of the result
\ingroup distance
*/
template<class BV>
bm::id_t count_sub(const BV& bv1, const BV& bv2)
{
distance_metric_descriptor dmd(bm::COUNT_SUB_AB);
distance_operation(bv1, bv2, &dmd, &dmd+1);
return dmd.result;
}
/*!
\brief Computes if there is any bit in SUB operation of two bitsets
\param bv1 - Argument bit-vector.
\param bv2 - Argument bit-vector.
\return non zero value if there is any bit
\ingroup distance
*/
template<class BV>
bm::id_t any_sub(const BV& bv1, const BV& bv2)
{
distance_metric_descriptor dmd(bm::COUNT_SUB_AB);
distance_operation_any(bv1, bv2, &dmd, &dmd+1);
return dmd.result;
}
/*!
\brief Computes bitcount of OR operation of two bitsets
\param bv1 - Argument bit-vector.
\param bv2 - Argument bit-vector.
\return bitcount of the result
\ingroup distance
*/
template<class BV>
bm::id_t count_or(const BV& bv1, const BV& bv2)
{
distance_metric_descriptor dmd(bm::COUNT_OR);
distance_operation(bv1, bv2, &dmd, &dmd+1);
return dmd.result;
}
/*!
\brief Computes if there is any bit in OR operation of two bitsets
\param bv1 - Argument bit-vector.
\param bv2 - Argument bit-vector.
\return non zero value if there is any bit
\ingroup distance
*/
template<class BV>
bm::id_t any_or(const BV& bv1, const BV& bv2)
{
distance_metric_descriptor dmd(bm::COUNT_OR);
distance_operation_any(bv1, bv2, &dmd, &dmd+1);
return dmd.result;
}
/**
\brief Internal algorithms scans the input for the block range limit
\internal
*/
template<class It>
It block_range_scan(It first, It last, unsigned nblock, unsigned* max_id)
{
It right;
for (right = first; right != last; ++right)
{
unsigned v = unsigned(*right);
BM_ASSERT(v < bm::id_max);
if (v >= *max_id)
*max_id = v;
unsigned nb = v >> bm::set_block_shift;
if (nb != nblock)
break;
}
return right;
}
/**
\brief OR Combine bitvector and the iterable sequence
Algorithm combines bvector with sequence of integers
(represents another set). When the agrument set is sorted
this method can give serious increase in performance.
\param bv - destination bitvector
\param first - first element of the iterated sequence
\param last - last element of the iterated sequence
\ingroup setalgo
*/
template<class BV, class It>
void combine_or(BV& bv, It first, It last)
{
typename BV::blocks_manager_type& bman = bv.get_blocks_manager();
unsigned max_id = 0;
while (first < last)
{
unsigned nblock = unsigned((*first) >> bm::set_block_shift);
It right = block_range_scan(first, last, nblock, &max_id);
if (max_id >= bv.size())
{
BM_ASSERT(max_id < bm::id_max);
bv.resize(max_id + 1);
}
// now we have one in-block array of bits to set
label1:
int block_type;
bm::word_t* blk =
bman.check_allocate_block(nblock,
true,
bv.get_new_blocks_strat(),
&block_type);
if (!blk)
continue;
if (block_type == 1) // gap
{
bm::gap_word_t* gap_blk = BMGAP_PTR(blk);
unsigned threshold = bm::gap_limit(gap_blk, bman.glen());
for (; first < right; ++first)
{
unsigned is_set;
unsigned nbit = (*first) & bm::set_block_mask;
unsigned new_block_len =
gap_set_value(true, gap_blk, nbit, &is_set);
if (new_block_len > threshold)
{
bman.extend_gap_block(nblock, gap_blk);
++first;
goto label1; // block pointer changed - goto reset
}
}
}
else // bit block
{
for (; first < right; ++first)
{
unsigned nbit = unsigned(*first & bm::set_block_mask);
unsigned nword = unsigned(nbit >> bm::set_word_shift);
nbit &= bm::set_word_mask;
blk[nword] |= (bm::word_t)1 << nbit;
} // for
}
} // while
bv.forget_count();
}
/**
\brief XOR Combine bitvector and the iterable sequence
Algorithm combines bvector with sequence of integers
(represents another set). When the agrument set is sorted
this method can give serious increase in performance.
\param bv - destination bitvector
\param first - first element of the iterated sequence
\param last - last element of the iterated sequence
\ingroup setalgo
*/
template<class BV, class It>
void combine_xor(BV& bv, It first, It last)
{
typename BV::blocks_manager_type& bman = bv.get_blocks_manager();
unsigned max_id = 0;
while (first < last)
{
unsigned nblock = unsigned((*first) >> bm::set_block_shift);
It right = block_range_scan(first, last, nblock, &max_id);
if (max_id >= bv.size())
{
BM_ASSERT(max_id < bm::id_max);
bv.resize(max_id + 1);
}
// now we have one in-block array of bits to set
label1:
int block_type;
bm::word_t* blk =
bman.check_allocate_block(nblock,
true,
bv.get_new_blocks_strat(),
&block_type,
false /* no null return */);
BM_ASSERT(blk);
if (block_type == 1) // gap
{
bm::gap_word_t* gap_blk = BMGAP_PTR(blk);
unsigned threshold = bm::gap_limit(gap_blk, bman.glen());
for (; first < right; ++first)
{
unsigned is_set;
unsigned nbit = (*first) & bm::set_block_mask;
is_set = gap_test(gap_blk, nbit);
BM_ASSERT(is_set <= 1);
is_set ^= 1;
unsigned new_block_len =
gap_set_value(is_set, gap_blk, nbit, &is_set);
if (new_block_len > threshold)
{
bman.extend_gap_block(nblock, gap_blk);
++first;
goto label1; // block pointer changed - goto reset
}
}
}
else // bit block
{
for (; first < right; ++first)
{
unsigned nbit = unsigned(*first & bm::set_block_mask);
unsigned nword = unsigned(nbit >> bm::set_word_shift);
nbit &= bm::set_word_mask;
blk[nword] ^= (bm::word_t)1 << nbit;
} // for
}
} // while
bv.forget_count();
}
/**
\brief SUB Combine bitvector and the iterable sequence
Algorithm combines bvector with sequence of integers
(represents another set). When the agrument set is sorted
this method can give serious increase in performance.
\param bv - destination bitvector
\param first - first element of the iterated sequence
\param last - last element of the iterated sequence
\ingroup setalgo
*/
template<class BV, class It>
void combine_sub(BV& bv, It first, It last)
{
typename BV::blocks_manager_type& bman = bv.get_blocks_manager();
unsigned max_id = 0;
while (first < last)
{
unsigned nblock = unsigned((*first) >> bm::set_block_shift);
It right = block_range_scan(first, last, nblock, &max_id);
if (max_id >= bv.size())
{
BM_ASSERT(max_id < bm::id_max);
bv.resize(max_id + 1);
}
// now we have one in-block array of bits to set
label1:
int block_type;
bm::word_t* blk =
bman.check_allocate_block(nblock,
false,
bv.get_new_blocks_strat(),
&block_type);
if (!blk)
continue;
if (block_type == 1) // gap
{
bm::gap_word_t* gap_blk = BMGAP_PTR(blk);
unsigned threshold = bm::gap_limit(gap_blk, bman.glen());
for (; first < right; ++first)
{
unsigned is_set;
unsigned nbit = (*first) & bm::set_block_mask;
is_set = gap_test(gap_blk, nbit);
if (!is_set)
continue;
unsigned new_block_len =
gap_set_value(false, gap_blk, nbit, &is_set);
if (new_block_len > threshold)
{
bman.extend_gap_block(nblock, gap_blk);
++first;
goto label1; // block pointer changed - goto reset
}
}
}
else // bit block
{
for (; first < right; ++first)
{
unsigned nbit = unsigned(*first & bm::set_block_mask);
unsigned nword = unsigned(nbit >> bm::set_word_shift);
nbit &= bm::set_word_mask;
blk[nword] &= ~((bm::word_t)1 << nbit);
} // for
}
} // while
bv.forget_count();
}
/**
\brief AND Combine bitvector and the iterable sequence
Algorithm combines bvector with sorted sequence of integers
(represents another set).
\param bv - destination bitvector
\param first - first element of the iterated sequence
\param last - last element of the iterated sequence
\ingroup setalgo
*/
template<class BV, class It>
void combine_and_sorted(BV& bv, It first, It last)
{
bm::id_t prev = 0;
for ( ;first < last; ++first)
{
bm::id_t id = *first;
BM_ASSERT(id >= prev); // make sure it's sorted
bv.set_bit_and(id, true);
if (++prev < id)
{
bv.set_range(prev, id-1, false);
}
prev = id;
}
}
/**
\brief AND Combine bitvector and the iterable sequence
Algorithm combines bvector with sequence of integers
(represents another set). When the agrument set is sorted
this method can give serious increase in performance.
\param bv - destination bitvector
\param first - first element of the iterated sequence
\param last - last element of the iterated sequence
\ingroup setalgo
\sa combine_and_sorted
*/
template<class BV, class It>
void combine_and(BV& bv, It first, It last)
{
BV bv_tmp;
combine_or(bv_tmp, first, last);
bv &= bv_tmp;
}
/*!
\brief Compute number of bit intervals (GAPs) in the bitvector
Algorithm traverses bit vector and count number of uninterrupted
intervals of 1s and 0s.
<pre>
For example:
00001111100000 - gives us 3 intervals
10001111100000 - 4 intervals
00000000000000 - 1 interval
11111111111111 - 1 interval
</pre>
\return Number of intervals
\ingroup setalgo
*/
template<class BV>
bm::id_t count_intervals(const BV& bv)
{
const typename BV::blocks_manager_type& bman = bv.get_blocks_manager();
bm::word_t*** blk_root = bman.get_rootblock();
typename BV::blocks_manager_type::block_count_change_func func(bman);
for_each_block(blk_root, bman.top_block_size(), func);
return func.count();
}
/*!
\brief Export bitset from an array of binary data representing
the bit vector.
Input array can be array of ints, chars or other native C types.
Method works with iterators, which makes it compatible with
STL containers and C arrays
\param bv - destination bitvector
\param first - first element of the iterated sequence
\param last - last element of the iterated sequence
\ingroup setalgo
*/
template<class BV, class It>
void export_array(BV& bv, It first, It last)
{
typename BV::blocks_manager_type& bman = bv.get_blocks_manager();
unsigned inp_word_size = sizeof(*first);
size_t array_size = last - first;
size_t bit_cnt = array_size * inp_word_size * 8;
int block_type;
bm::word_t tmp;
unsigned b1, b2, b3, b4;
if (bit_cnt >= bv.size())
bv.resize((bm::id_t)bit_cnt + 1);
else
bv.set_range((bm::id_t)bit_cnt, bv.size() - 1, false);
switch (inp_word_size)
{
case 1:
{
size_t word_cnt = array_size / 4;
for (unsigned i = 0; i < bm::set_total_blocks; ++i)
{
bm::word_t* blk =
bman.check_allocate_block(i,
false,
BM_BIT,
&block_type,
false /*no NULL ret*/);
if (block_type == 1) // gap
{
blk = bman.convert_gap2bitset(i, BMGAP_PTR(blk));
}
bm::word_t* wrd_ptr = blk;
if (word_cnt >= bm::set_block_size) {
bm::word_t* wrd_end = blk + bm::set_block_size;
do {
b1 = *first++; b2 = *first++;
b3 = *first++; b4 = *first++;
tmp = b1 | (b2 << 8) | (b3 << 16) | (b4 << 24);
*wrd_ptr++ = tmp;
} while (wrd_ptr < wrd_end);
word_cnt -= bm::set_block_size;
}
else
{
size_t to_convert = last - first;
for (size_t j = 0; j < to_convert / 4; ++j)
{
b1 = *first++; b2 = *first++;
b3 = *first++; b4 = *first++;
tmp = b1 | (b2 << 8) | (b3 << 16) | (b4 << 24);
*wrd_ptr++ = tmp;
}
while (1)
{
if (first == last) break;
*wrd_ptr = *first++;
if (first == last) break;
*wrd_ptr |= (*first++) << 8;
if (first == last) break;
*wrd_ptr |= (*first++) << 16;
if (first == last) break;
*wrd_ptr |= (*first++) << 24;
++wrd_ptr;
}
}
if (first == last) break;
} // for
}
break;
case 2:
{
size_t word_cnt = array_size / 2;
for (unsigned i = 0; i < bm::set_total_blocks; ++i)
{
bm::word_t* blk =
bman.check_allocate_block(i,
false,
BM_BIT,
&block_type,
false /*no NULL ret*/);
if (block_type == 1) // gap
{
blk = bman.convert_gap2bitset(i, BMGAP_PTR(blk));
}
bm::word_t* wrd_ptr = blk;
if (word_cnt >= bm::set_block_size) {
bm::word_t* wrd_end = blk + bm::set_block_size;
do {
b1 = *first++; b2 = *first++;
tmp = b1 | (b2 << 16);
*wrd_ptr++ = tmp;
} while (wrd_ptr < wrd_end);
word_cnt -= bm::set_block_size;
}
else
{
size_t to_convert = last - first;
for (unsigned j = 0; j < to_convert / 2; ++j)
{
b1 = *first++; b2 = *first++;
tmp = b1 | (b2 << 16);
*wrd_ptr++ = tmp;
}
while (1)
{
if (first == last) break;
*wrd_ptr = *first++;
if (first == last) break;
*wrd_ptr |= (*first++) << 16;
++wrd_ptr;
}
}
if (first == last) break;
} // for
}
break;
case 4:
{
size_t word_cnt = array_size;
for (unsigned i = 0; i < bm::set_total_blocks; ++i)
{
bm::word_t* blk =
bman.check_allocate_block(i,
false,
BM_BIT,
&block_type,
false /*no NULL ret*/);
if (block_type == 1) // gap
{
blk = bman.convert_gap2bitset(i, BMGAP_PTR(blk));
}
bm::word_t* wrd_ptr = blk;
if (word_cnt >= bm::set_block_size) {
bm::word_t* wrd_end = blk + bm::set_block_size;
do {
*wrd_ptr++ = *first++;
} while (wrd_ptr < wrd_end);
word_cnt -= bm::set_block_size;
}
else
{
while (1)
{
if (first == last) break;
*wrd_ptr = *first++;
++wrd_ptr;
}
}
if (first == last) break;
} // for
}
break;
default:
BM_ASSERT(0);
} // switch
}
} // namespace bm
#ifdef _MSC_VER
#pragma warning( pop )
#endif
#endif
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