/usr/share/genometools/gtdata/spec/output_drivers/text is in genometools-common 1.5.10+ds-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 | --[[
This is an output template for the regular text output format.
]]
package.path = gt.script_dir .. "/../?.lua;" .. package.path
if global.colored_output then
require("ansicolors")
else
ansicolors = {}
ansicolors.yellow = ""
ansicolors.red = ""
ansicolors.green = ""
ansicolors.magenta = ""
ansicolors.reset = ""
end
function tablelength(T)
local count = 0
for _ in pairs(T) do count = count + 1 end
return count
end
function print_aspects(aspects)
for aspect, aspect_details in pairs(aspects) do
template_print(" - " .. aspect .. " (")
if aspect_details.successes > 0 then
template_print(ansicolors.green .. aspect_details.successes
.. " success/es" .. ansicolors.reset)
end
if aspect_details.failures > 0 then
if aspect_details.successes > 0 then
template_print(", ")
end
template_print(ansicolors.red .. aspect_details.failures
.. " failure/s" .. ansicolors.reset)
end
if aspect_details.runtime_errors > 0 then
if aspect_details.successes > 0 or aspect_details.failures > 0 then
template_print(", ")
end
template_print(ansicolors.magenta .. aspect_details.runtime_errors
.. " runtime error/s" .. ansicolors.reset)
end
template_print(")\n")
if global.show_details then
for n, node in ipairs(aspect_details.nodes) do
local id = ""
if node.ID then
id = node.ID .. ", "
end
template_print(ansicolors.red .." offending node #"..n .. " ("
.. id .. "from " .. node.filename .. ", line "
.. node.linenumber .. "):" .. ansicolors.reset .. "\n")
for _, msg in ipairs(node.failure_messages) do
template_print(ansicolors.red .." " .. msg
.. ansicolors.reset .. "\n")
end
for _, msg in ipairs(node.runtime_error_messages) do
template_print(ansicolors.magenta .." " .. msg
.. ansicolors.reset .. "\n")
end
end
end
end
end
local nof_feats = tablelength(features)
local nof_regions = tablelength(regions)
local nof_metas = tablelength(metas)
local nof_sequences = tablelength(sequences)
local nof_comments = tablelength(comments)
template_print("According to the specification in " ..
global.spec_filename .. ",\n\n")
if nof_feats > 0 then
for feature, aspects in pairs(features) do
template_print("a " .. ansicolors.yellow .. feature
.. ansicolors.reset .. " feature\n")
print_aspects(aspects)
end
end
if nof_metas > 0 then
template_print("a " .. ansicolors.yellow .. "meta"
.. ansicolors.reset .. " node\n")
print_aspects(metas)
end
if nof_regions > 0 then
template_print("a " .. ansicolors.yellow .. "region"
.. ansicolors.reset .. " node\n")
print_aspects(regions)
end
if nof_comments > 0 then
template_print("a " .. ansicolors.yellow .. "comment"
.. ansicolors.reset .. " node\n")
print_aspects(comments)
end
if nof_sequences > 0 then
template_print("a " .. ansicolors.yellow .. "sequence"
.. ansicolors.reset .. " node\n")
print_aspects(sequences)
end
if #warnings then
template_print("\nEncountered " .. ansicolors.yellow
.. #warnings .. ansicolors.reset .. " parser warning/s.\n")
if global.show_details then
for _, msg in ipairs(warnings) do
template_print(" - " .. msg .. "\n")
end
end
end
template_print("\nTraversed " .. global.checked_ccs ..
" CCs (" .. global.checked_types .. " feature types), checked "
.. global.checked_nodes .. " nodes for "
.. global.checked_aspects .. " aspects.\n")
template_print("Finished in " .. global.runtime .. " s.\n")
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