/etc/getData.conf.d/RefSeq.mk is in getdata 0.2-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 | SHARED_WGET_OPTIONS=$(shell getData --getWgetOptions)
# $SPECIES is provided to make in the call from /etc/getData.conf.d/RefSeq.getData.
get:
wget $(SHARED_WGET_OPTIONS) ftp://ftp.ncbi.nih.gov/refseq/$(SPECIES)/mRNA_Prot/*ff.gz
unpack:
for file in *ff.gz ; do zcat $$file > `basename $$file .gz` ; done
blast:
emboss:
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