/usr/share/doc/hydroffice.bag-doc/html/_modules/hydroffice/bag/tools/bag_uncertainty.html is in hydroffice.bag-doc 0.2.15-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 | <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
<title>hydroffice.bag.tools.bag_uncertainty — HydrOffice BAG 0.2.15 documentation</title>
<link rel="stylesheet" href="../../../../_static/hyo.css" type="text/css" />
<link rel="stylesheet" href="../../../../_static/pygments.css" type="text/css" />
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT: '../../../../',
VERSION: '0.2.15',
COLLAPSE_INDEX: false,
FILE_SUFFIX: '.html',
HAS_SOURCE: true
};
</script>
<script type="text/javascript" src="../../../../_static/jquery.js"></script>
<script type="text/javascript" src="../../../../_static/underscore.js"></script>
<script type="text/javascript" src="../../../../_static/doctools.js"></script>
<link rel="index" title="Index" href="../../../../genindex.html" />
<link rel="search" title="Search" href="../../../../search.html" />
<link rel="top" title="HydrOffice BAG 0.2.15 documentation" href="../../../../index.html" />
<link rel="up" title="hydroffice.bag" href="../../bag.html" />
</head>
<body role="document">
<div class="related" role="navigation" aria-label="related navigation">
<h3>Navigation</h3>
<ul>
<li class="right" style="margin-right: 10px">
<a href="../../../../genindex.html" title="General Index"
accesskey="I">index</a></li>
<li class="right" >
<a href="../../../../py-modindex.html" title="Python Module Index"
>modules</a> |</li>
<li class="nav-item nav-item-0"><a href="../../../../index.html">HydrOffice BAG 0.2.15 documentation</a> »</li>
<li class="nav-item nav-item-1"><a href="../../../index.html" >Module code</a> »</li>
<li class="nav-item nav-item-2"><a href="../../bag.html" accesskey="U">hydroffice.bag</a> »</li>
</ul>
</div>
<div class="document">
<div class="documentwrapper">
<div class="bodywrapper">
<div class="body" role="main">
<div class="deck">
<p>
This document describes the HydrOffice BAG library and tools (0.2). For the source code,
<a href="https://bitbucket.org/gmasetti/hyo_bag">go here</a>.
</p>
</div>
<h1>Source code for hydroffice.bag.tools.bag_uncertainty</h1><div class="highlight"><pre>
<span></span><span class="kn">from</span> <span class="nn">__future__</span> <span class="k">import</span> <span class="n">absolute_import</span><span class="p">,</span> <span class="n">division</span><span class="p">,</span> <span class="n">print_function</span><span class="p">,</span> <span class="n">unicode_literals</span>
<span class="kn">import</span> <span class="nn">os</span>
<span class="kn">import</span> <span class="nn">logging</span>
<div class="viewcode-block" id="main"><a class="viewcode-back" href="../../../../api/hydroffice.bag.tools.html#hydroffice.bag.tools.bag_uncertainty.main">[docs]</a><span class="k">def</span> <span class="nf">main</span><span class="p">():</span>
<span class="n">logger</span> <span class="o">=</span> <span class="n">logging</span><span class="o">.</span><span class="n">getLogger</span><span class="p">()</span>
<span class="n">logger</span><span class="o">.</span><span class="n">setLevel</span><span class="p">(</span><span class="n">logging</span><span class="o">.</span><span class="n">NOTSET</span><span class="p">)</span>
<span class="kn">import</span> <span class="nn">argparse</span>
<span class="kn">from</span> <span class="nn">hydroffice.bag</span> <span class="k">import</span> <span class="n">BAGFile</span><span class="p">,</span> <span class="n">is_bag</span><span class="p">,</span> <span class="n">__version__</span>
<span class="n">app_name</span> <span class="o">=</span> <span class="s2">"bag_uncertainty"</span>
<span class="n">app_info</span> <span class="o">=</span> <span class="s2">"Extraction of uncertainty layer from an OpenNS BAG file, using hydroffice.bag r</span><span class="si">%s</span><span class="s2">"</span> <span class="o">%</span> <span class="n">__version__</span>
<span class="n">formats</span> <span class="o">=</span> <span class="p">[</span><span class="s1">'ascii'</span><span class="p">,</span> <span class="s1">'geotiff'</span><span class="p">,</span> <span class="s1">'xyz'</span><span class="p">]</span>
<span class="n">parser</span> <span class="o">=</span> <span class="n">argparse</span><span class="o">.</span><span class="n">ArgumentParser</span><span class="p">(</span><span class="n">prog</span><span class="o">=</span><span class="n">app_name</span><span class="p">,</span> <span class="n">description</span><span class="o">=</span><span class="n">app_info</span><span class="p">)</span>
<span class="n">parser</span><span class="o">.</span><span class="n">add_argument</span><span class="p">(</span><span class="s2">"bag_file"</span><span class="p">,</span> <span class="nb">type</span><span class="o">=</span><span class="nb">str</span><span class="p">,</span> <span class="n">help</span><span class="o">=</span><span class="s2">"a valid BAG file from which to extract metadata"</span><span class="p">)</span>
<span class="n">parser</span><span class="o">.</span><span class="n">add_argument</span><span class="p">(</span><span class="s2">"-f"</span><span class="p">,</span> <span class="s2">"--format"</span><span class="p">,</span> <span class="n">help</span><span class="o">=</span><span class="s2">"one of the available file format: "</span> <span class="o">+</span> <span class="s2">", "</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">formats</span><span class="p">),</span>
<span class="n">choices</span><span class="o">=</span><span class="n">formats</span><span class="p">,</span> <span class="n">default</span><span class="o">=</span><span class="s2">"geotiff"</span><span class="p">,</span> <span class="n">metavar</span><span class="o">=</span><span class="s1">''</span><span class="p">)</span>
<span class="n">parser</span><span class="o">.</span><span class="n">add_argument</span><span class="p">(</span><span class="s2">"-o"</span><span class="p">,</span> <span class="s2">"--output"</span><span class="p">,</span> <span class="n">help</span><span class="o">=</span><span class="s2">"the output file"</span><span class="p">,</span> <span class="nb">type</span><span class="o">=</span><span class="nb">str</span><span class="p">)</span>
<span class="n">parser</span><span class="o">.</span><span class="n">add_argument</span><span class="p">(</span><span class="s2">"-v"</span><span class="p">,</span> <span class="s2">"--verbose"</span><span class="p">,</span> <span class="n">help</span><span class="o">=</span><span class="s2">"increase output verbosity"</span><span class="p">,</span> <span class="n">action</span><span class="o">=</span><span class="s2">"store_true"</span><span class="p">)</span>
<span class="n">args</span> <span class="o">=</span> <span class="n">parser</span><span class="o">.</span><span class="n">parse_args</span><span class="p">()</span>
<span class="k">if</span> <span class="n">args</span><span class="o">.</span><span class="n">verbose</span><span class="p">:</span>
<span class="nb">print</span><span class="p">(</span><span class="s2">"> verbosity: ON"</span><span class="p">)</span>
<span class="n">ch</span> <span class="o">=</span> <span class="n">logging</span><span class="o">.</span><span class="n">StreamHandler</span><span class="p">()</span>
<span class="n">ch</span><span class="o">.</span><span class="n">setLevel</span><span class="p">(</span><span class="n">logging</span><span class="o">.</span><span class="n">DEBUG</span><span class="p">)</span> <span class="c1"># change to WARNING to reduce verbosity, DEBUG for high verbosity</span>
<span class="n">ch_formatter</span> <span class="o">=</span> <span class="n">logging</span><span class="o">.</span><span class="n">Formatter</span><span class="p">(</span><span class="s1">'</span><span class="si">%(levelname)-9s</span><span class="s1"> </span><span class="si">%(name)s</span><span class="s1">.</span><span class="si">%(funcName)s</span><span class="s1">:</span><span class="si">%(lineno)d</span><span class="s1"> > </span><span class="si">%(message)s</span><span class="s1">'</span><span class="p">)</span>
<span class="n">ch</span><span class="o">.</span><span class="n">setFormatter</span><span class="p">(</span><span class="n">ch_formatter</span><span class="p">)</span>
<span class="n">logger</span><span class="o">.</span><span class="n">addHandler</span><span class="p">(</span><span class="n">ch</span><span class="p">)</span>
<span class="k">if</span> <span class="n">args</span><span class="o">.</span><span class="n">verbose</span><span class="p">:</span>
<span class="nb">print</span><span class="p">(</span><span class="s2">"> input: </span><span class="si">%s</span><span class="s2">"</span> <span class="o">%</span> <span class="n">args</span><span class="o">.</span><span class="n">bag_file</span><span class="p">)</span>
<span class="k">if</span> <span class="n">args</span><span class="o">.</span><span class="n">output</span><span class="p">:</span>
<span class="n">args</span><span class="o">.</span><span class="n">output</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">abspath</span><span class="p">(</span><span class="n">args</span><span class="o">.</span><span class="n">output</span><span class="p">)</span>
<span class="nb">print</span><span class="p">(</span><span class="s2">"> output: </span><span class="si">%s</span><span class="s2">"</span> <span class="o">%</span> <span class="n">args</span><span class="o">.</span><span class="n">output</span><span class="p">)</span>
<span class="k">else</span><span class="p">:</span>
<span class="n">args</span><span class="o">.</span><span class="n">output</span> <span class="o">=</span> <span class="kc">None</span>
<span class="nb">print</span><span class="p">(</span><span class="s2">"> output: [default]"</span><span class="p">)</span>
<span class="nb">print</span><span class="p">(</span><span class="s2">"> format: </span><span class="si">%s</span><span class="s2">"</span> <span class="o">%</span> <span class="n">args</span><span class="o">.</span><span class="n">format</span><span class="p">)</span>
<span class="k">if</span> <span class="ow">not</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">exists</span><span class="p">(</span><span class="n">args</span><span class="o">.</span><span class="n">bag_file</span><span class="p">):</span>
<span class="n">parser</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="s2">"ERROR: the input valid does not exist: </span><span class="si">%s</span><span class="s2">"</span> <span class="o">%</span> <span class="n">args</span><span class="o">.</span><span class="n">bag_file</span><span class="p">)</span>
<span class="k">if</span> <span class="ow">not</span> <span class="n">is_bag</span><span class="p">(</span><span class="n">args</span><span class="o">.</span><span class="n">bag_file</span><span class="p">):</span>
<span class="n">parser</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="s2">"ERROR: the input valid does not seem a BAG file: </span><span class="si">%s</span><span class="s2">"</span> <span class="o">%</span> <span class="n">args</span><span class="o">.</span><span class="n">bag_file</span><span class="p">)</span>
<span class="n">bf</span> <span class="o">=</span> <span class="n">BAGFile</span><span class="p">(</span><span class="n">args</span><span class="o">.</span><span class="n">bag_file</span><span class="p">)</span>
<span class="n">bag_meta</span> <span class="o">=</span> <span class="kc">None</span>
<span class="k">try</span><span class="p">:</span>
<span class="n">bag_meta</span> <span class="o">=</span> <span class="n">bf</span><span class="o">.</span><span class="n">populate_metadata</span><span class="p">()</span>
<span class="k">except</span> <span class="ne">Exception</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
<span class="n">parser</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="s2">"ERROR: issue in metadata population: </span><span class="si">%s</span><span class="s2">"</span> <span class="o">%</span> <span class="n">e</span><span class="p">)</span>
<span class="n">bag_uncertainty</span> <span class="o">=</span> <span class="kc">None</span>
<span class="k">try</span><span class="p">:</span>
<span class="n">bag_uncertainty</span> <span class="o">=</span> <span class="n">bf</span><span class="o">.</span><span class="n">uncertainty</span><span class="p">(</span><span class="n">mask_nan</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span>
<span class="k">except</span> <span class="ne">Exception</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
<span class="n">parser</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="s2">"ERROR: issue in uncertainty population: </span><span class="si">%s</span><span class="s2">"</span> <span class="o">%</span> <span class="n">e</span><span class="p">)</span>
<span class="k">try</span><span class="p">:</span>
<span class="kn">from</span> <span class="nn">hydroffice.bag.uncertainty</span> <span class="k">import</span> <span class="n">Uncertainty2Gdal</span>
<span class="n">Uncertainty2Gdal</span><span class="p">(</span><span class="n">bag_uncertainty</span><span class="o">=</span><span class="n">bag_uncertainty</span><span class="p">,</span> <span class="n">bag_meta</span><span class="o">=</span><span class="n">bag_meta</span><span class="p">,</span> <span class="n">fmt</span><span class="o">=</span><span class="n">args</span><span class="o">.</span><span class="n">format</span><span class="p">,</span> <span class="n">out_file</span><span class="o">=</span><span class="n">args</span><span class="o">.</span><span class="n">output</span><span class="p">)</span>
<span class="k">except</span> <span class="ne">Exception</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
<span class="n">parser</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="s2">"ERROR: issue in output creation: </span><span class="si">%s</span><span class="s2">"</span> <span class="o">%</span> <span class="n">e</span><span class="p">)</span>
<span class="k">if</span> <span class="n">args</span><span class="o">.</span><span class="n">verbose</span><span class="p">:</span>
<span class="nb">print</span><span class="p">(</span><span class="s2">"> DONE"</span><span class="p">)</span></div>
<span class="k">if</span> <span class="n">__name__</span> <span class="o">==</span> <span class="s2">"__main__"</span><span class="p">:</span>
<span class="n">main</span><span class="p">()</span>
</pre></div>
</div>
</div>
</div>
<div class="sphinxsidebar" role="navigation" aria-label="main navigation">
<div class="sphinxsidebarwrapper"><p class="logo"><a href="../../../../index.html">
<img class="logo" src="favicon.png" alt="Logo"/>
</a></p>
<div id="searchbox" style="display: none" role="search">
<h3>Quick search</h3>
<form class="search" action="../../../../search.html" method="get">
<div><input type="text" name="q" /></div>
<div><input type="submit" value="Go" /></div>
<input type="hidden" name="check_keywords" value="yes" />
<input type="hidden" name="area" value="default" />
</form>
</div>
<script type="text/javascript">$('#searchbox').show(0);</script>
</div>
</div>
<div class="clearer"></div>
</div>
<div class="related" role="navigation" aria-label="related navigation">
<h3>Navigation</h3>
<ul>
<li class="right" style="margin-right: 10px">
<a href="../../../../genindex.html" title="General Index"
>index</a></li>
<li class="right" >
<a href="../../../../py-modindex.html" title="Python Module Index"
>modules</a> |</li>
<li class="nav-item nav-item-0"><a href="../../../../index.html">HydrOffice BAG 0.2.15 documentation</a> »</li>
<li class="nav-item nav-item-1"><a href="../../../index.html" >Module code</a> »</li>
<li class="nav-item nav-item-2"><a href="../../bag.html" >hydroffice.bag</a> »</li>
</ul>
</div>
<div class="footer" role="contentinfo">
© Copyright 2016, University of New Hampshire, Center for Coastal and Ocean Mapping.
</div>
</body>
</html>
|