/usr/share/hyphy/GeneticCodes/Ciliate.cod is in hyphy-common 2.2.7+dfsg-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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Ciliate;
The Ciliate, Dasycladacean and Hexamita Nuclear Code (transl_table=6)
;
14 /*AAA*/,
13 /*AAC*/,
14 /*AAG*/,
13 /*AAT*/,
7 /*ACA*/,
7 /*ACC*/,
7 /*ACG*/,
7 /*ACT*/,
19 /*AGA*/,
5 /*AGC*/,
19 /*AGG*/,
5 /*AGT*/,
2 /*ATA*/,
2 /*ATC*/,
3 /*ATG*/,
2 /*ATT*/,
12 /*CAA*/,
11 /*CAC*/,
12 /*CAG*/,
11 /*CAT*/,
6 /*CCA*/,
6 /*CCC*/,
6 /*CCG*/,
6 /*CCT*/,
19 /*CGA*/,
19 /*CGC*/,
19 /*CGG*/,
19 /*CGT*/,
1 /*CTA*/,
1 /*CTC*/,
1 /*CTG*/,
1 /*CTT*/,
16 /*GAA*/,
15 /*GAC*/,
16 /*GAG*/,
15 /*GAT*/,
8 /*GCA*/,
8 /*GCC*/,
8 /*GCG*/,
8 /*GCT*/,
20 /*GGA*/,
20 /*GGC*/,
20 /*GGG*/,
20 /*GGT*/,
4 /*GTA*/,
4 /*GTC*/,
4 /*GTG*/,
4 /*GTT*/,
12 /*TAA*/,
9 /*TAC*/,
12 /*TAG*/,
9 /*TAT*/,
5 /*TCA*/,
5 /*TCC*/,
5 /*TCG*/,
5 /*TCT*/,
10 /*TGA*/,
17 /*TGC*/,
18 /*TGG*/,
17 /*TGT*/,
1 /*TTA*/,
0 /*TTC*/,
1 /*TTG*/,
0 /*TTT*/;
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