/usr/share/hyphy/GeneticCodes/Vertebratemtdna.cod is in hyphy-common 2.2.7+dfsg-1.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 | 11;
Vertebrate_mtDNA;
Vertebrate mitochondrial genetic code;
/* numerical codes for various aminoacids
and the stop codon
0 == Phe
1 == Leu
2 == Ile
3 == Met
4 == Val
5 == Ser
6 == Pro
7 == Thr
8 == Ala
9 == Tyr
10 == Stop
11 == His
12 == Gln
13 == Asn
14 == Lys
15 == Asp
16 == Glu
17 == Cys
18 == Trp
19 == Arg
20 == Gly
AAA,AAC,AAG....TTA,TTC,TTG,TTT - 64 all in all
Each line below represent a codon->aminoacid
correspondence, e.g the line
14, AAG
means that AAG encodes Lys (which is denoted by 14, cf. the table above)
*/
14,/*AAA*/
13,/*AAC*/
14,/*AAG*/
13,/*AAT*/
7, /*ACA*/
7, /*ACC*/
7, /*ACG*/
7, /*ACT*/
10,/*AGA*/
5, /*AGC*/
10, /*AGG*/
5, /*AGT*/
3, /*ATA*/
2, /*ATC*/
3, /*ATG*/
2, /*ATT*/
12,/*CAA*/
11,/*CAC*/
12,/*CAG*/
11,/*CAT*/
6, /*CCA*/
6, /*CCC*/
6, /*CCG*/
6, /*CCT*/
19,/*CGA*/
19,/*CGC*/
19,/*CGG*/
19,/*CGT*/
1, /*CTA*/
1, /*CTG*/
1, /*CTC*/
1, /*CTT*/
16,/*GAA*/
15,/*GAC*/
16,/*GAG*/
15,/*GAT*/
8, /*GCA*/
8, /*GCC*/
8, /*GCG*/
8, /*GCT*/
20,/*GGA*/
20,/*GGC*/
20,/*GGG*/
20,/*GGT*/
4, /*GTA*/
4, /*GTC*/
4, /*GTG*/
4, /*GTT*/
10,/*TAA*/
9, /*TAC*/
10,/*TAG*/
9, /*TAT*/
5, /*TCA*/
5, /*TCC*/
5, /*TCG*/
5, /*TCT*/
18,/*TGA*/
17,/*TGC*/
18,/*TGG*/
17,/*TGT*/
1, /*TTA*/
0, /*TTC*/
1, /*TTG*/
0; /*TTT*/
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