hyphy-common 2.2.7+dfsg-1 / usr / share / hyphy / TemplateBatchFiles / TemplateModels

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/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ is in hyphy-common 2.2.7+dfsg-1.

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File Mime Type Owner Mode Size
..
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/190 text/plain root:root 0o644 1.4 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/BranchSiteTemplate.mdl text/plain root:root 0o644 6.9 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/CF3x4.bf text/plain root:root 0o644 2.7 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Custom_AA.mdl text/x-c root:root 0o644 3.4 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Custom_AA_empirical.mdl text/x-c root:root 0o644 4.3 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Dayhoff.mdl text/x-c root:root 0o644 33.7 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Dayhoff_F.mdl text/x-c root:root 0o644 33.2 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Default text/plain root:root 0o644 867 bytes
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM+F+omega.mdl text/plain root:root 0o644 4.1 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM+F.mdl text/plain root:root 0o644 4.1 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM+F3x4.mdl text/plain root:root 0o644 4.5 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM+MLFREQS.mdl text/x-c root:root 0o644 4.2 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM.mdl text/plain root:root 0o644 4.1 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EIAA.mdl text/x-c root:root 0o644 1.6 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EIAAFreq.mdl text/x-c root:root 0o644 2.2 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EX.dat text/plain root:root 0o644 2.7 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EX.mdl text/x-c root:root 0o644 33.9 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/ root:root 0o755
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/BLOSUM62 text/plain root:root 0o644 6.3 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/Dayhoff text/plain root:root 0o644 6.3 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/H5N1 text/plain root:root 0o644 7.8 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/HIVBetween text/plain root:root 0o644 3.4 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/HIVWithin text/plain root:root 0o644 3.2 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/IAV text/plain root:root 0o644 6.3 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/JTT text/plain root:root 0o644 7.9 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/LCAP text/plain root:root 0o644 35.8 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/LG text/plain root:root 0o644 6.3 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/MtArt text/plain root:root 0o644 6.3 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/VT text/plain root:root 0o644 6.3 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/WAG text/plain root:root 0o644 6.3 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/cpREV text/plain root:root 0o644 6.3 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/modellist.ibf text/plain root:root 0o644 9.9 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/mtMAM text/plain root:root 0o644 6.3 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/mtREV24 text/plain root:root 0o644 6.3 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/rtREV text/plain root:root 0o644 6.3 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalCodon/ root:root 0o755
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalCodon/KHG_ECM text/plain root:root 0o644 37.1 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalCodon/KHG_ECMu text/plain root:root 0o644 37.1 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/F81.mdl text/x-c root:root 0o644 1.2 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/F81_binary.mdl text/x-c root:root 0o644 1.2 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/F84.mdl text/x-c root:root 0o644 2.3 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/F84P.mdl text/plain root:root 0o644 3.7 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GRM.mdl text/x-c root:root 0o644 1.6 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GY94.ibf text/plain root:root 0o644 4.9 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GY94.mdl text/x-c root:root 0o644 1.8 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GY94customF3x4.mdl text/plain root:root 0o644 7.0 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GY94w9.mdl text/x-c root:root 0o644 2.1 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVbetween+F.mdl text/x-c root:root 0o644 355 bytes
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVbetween.ibf text/x-c root:root 0o644 3.9 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVbetween.mdl text/x-c root:root 0o644 597 bytes
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVwithin+F.mdl text/x-c root:root 0o644 351 bytes
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVwithin.ibf text/x-c root:root 0o644 4.0 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVwithin.mdl text/x-c root:root 0o644 490 bytes
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HKY85.mdl text/x-c root:root 0o644 1.5 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/JC69.mdl text/x-c root:root 0o644 1.2 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/JC69_binary.mdl text/x-c root:root 0o644 1.1 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Jones.mdl text/x-c root:root 0o644 34.3 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Jones_F.mdl text/x-c root:root 0o644 33.2 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/K2P.mdl text/x-c root:root 0o644 1.4 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/K3ST.mdl text/x-c root:root 0o644 1.5 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/LCAP.mdl text/plain root:root 0o644 9.0 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MEC.mdl text/plain root:root 0o644 7.8 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94.mdl text/x-c root:root 0o644 5.7 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94custom.mdl text/plain root:root 0o644 9.3 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94customCF3x4.mdl text/plain root:root 0o644 9.5 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94customF1x4.mdl text/plain root:root 0o644 9.4 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94customFreqs.mdl text/plain root:root 0o644 8.9 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAA.mdl text/x-c root:root 0o644 5.9 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAF61.mdl text/x-c root:root 0o644 5.2 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAF61multiple.mdl text/x-c root:root 0o644 5.5 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAFreqs.mdl text/x-c root:root 0o644 5.4 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAUserFreqs.mdl text/x-c root:root 0o644 5.3 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wEX.mdl text/x-c root:root 0o644 5.4 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94with9freqs.mdl text/x-c root:root 0o644 6.3 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94x2.mdl text/plain root:root 0o644 10.8 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MGFreqsEstimator.ibf text/plain root:root 0o644 1.5 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MGwAA.ibf text/plain root:root 0o644 3.3 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MGwEX.ibf text/plain root:root 0o644 2.6 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/NRM+Freqs.mdl text/plain root:root 0o644 1.5 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/NRM.mdl text/plain root:root 0o644 1.7 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/PCH text/plain root:root 0o644 867 bytes
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNA16.mdl text/x-c root:root 0o644 5.7 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNA16A text/plain root:root 0o644 1.4 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNA16SvH.mdl text/x-c root:root 0o644 3.4 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAEqualInput text/plain root:root 0o644 549 bytes
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAF81 text/plain root:root 0o644 916 bytes
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAMuse95.mdl text/x-c root:root 0o644 3.7 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAREV text/plain root:root 0o644 809 bytes
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAREV_1 text/plain root:root 0o644 785 bytes
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/S4 text/plain root:root 0o644 866 bytes
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/STGRM.mdl text/x-c root:root 0o644 1.6 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/TrN.mdl text/x-c root:root 0o644 1.5 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/UniversalCode.def text/plain root:root 0o644 5.0 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/WAG.mdl text/x-c root:root 0o644 27.9 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/WAG_F.mdl text/x-c root:root 0o644 27.5 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Yang2000Distributions.def text/plain root:root 0o644 10.4 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/chooseGeneticCode.def text/plain root:root 0o644 16.6 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/custm4x4.mdl text/x-c root:root 0o644 9.2 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/defineGamma.mdl text/plain root:root 0o644 10.7 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/defineHM.mdl text/plain root:root 0o644 10.0 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/fitness.mdl text/plain root:root 0o644 1.8 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters.mdl text/plain root:root 0o644 800 bytes
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters2.mdl text/plain root:root 0o644 546 bytes
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters3.mdl text/plain root:root 0o644 659 bytes
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters4.mdl text/plain root:root 0o644 1.7 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters5.mdl text/plain root:root 0o644 660 bytes
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/models.lst text/plain root:root 0o644 10.7 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtMAM.mdl text/x-c root:root 0o644 16.0 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtMAM_F.mdl text/x-c root:root 0o644 15.6 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtREV.mdl text/x-c root:root 0o644 1.4 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtREV_24.mdl text/x-c root:root 0o644 27.6 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtREV_24_F.mdl text/x-c root:root 0o644 27.2 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/reducedREV.mdl text/x-c root:root 0o644 3.0 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/rtREV.mdl text/x-c root:root 0o644 28.1 KB
/usr/share/hyphy/TemplateBatchFiles/TemplateModels/rtREV_F.mdl text/x-c root:root 0o644 27.7 KB

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