/usr/share/hyphy/TemplateBatchFiles/globalChecker.ibf is in hyphy-common 2.2.7+dfsg-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 | pCount = 0;
if (ds.species>2)
{
dummyTS = "";
dummyTS * 256;
dummyTS * "(";
for (k=0; k<ds.species; k=k+1)
{
GetString (sName, ds, k);
if (k)
{
dummyTS * ",";
}
dummyTS * sName;
}
dummyTS * ")";
dummyTS * 0;
Tree dummyT = dummyTS;
LikelihoodFunction lf = (filteredData, dummyT);
GetString (params, lf, -1);
globalParamList = params["Global Independent"];
pCount = Columns (globalParamList);
Export (lf_prefix, lf);
lf_prefix = lf_prefix ^ {{"Tree dummyT.+",""}};
}
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