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<div class="textblock"><code>#include "<a class="el" href="api__global_8h_source.html">api/api_global.h</a>"</code><br />
<code>#include <cassert></code><br />
<code>#include <string></code><br />
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<p><a href="_bam_constants_8h_source.html">Go to the source code of this file.</a></p>
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Namespaces</h2></td></tr>
<tr class="memitem:namespace_bam_tools_1_1_constants"><td class="memItemLeft" align="right" valign="top">  </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html">BamTools::Constants</a></td></tr>
<tr class="memdesc:namespace_bam_tools_1_1_constants"><td class="mdescLeft"> </td><td class="mdescRight">Provides basic constants for handling BAM files. <br /></td></tr>
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<tr class="memitem:namespace_bam_tools"><td class="memItemLeft" align="right" valign="top">  </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools.html">BamTools</a></td></tr>
<tr class="memdesc:namespace_bam_tools"><td class="mdescLeft"> </td><td class="mdescRight">Contains all <a class="el" href="namespace_bam_tools.html" title="Contains all BamTools classes & methods. ">BamTools</a> classes & methods. <br /></td></tr>
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Variables</h2></td></tr>
<tr class="memitem:aab7577dd1e0aa486b2c41b571246734a"><td class="memItemLeft" align="right" valign="top">const uint8_t </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#aab7577dd1e0aa486b2c41b571246734a">BamTools::Constants::BAM_SIZEOF_INT</a> = 4</td></tr>
<tr class="separator:aab7577dd1e0aa486b2c41b571246734a"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a4d420915043283204725c9014e02ba73"><td class="memItemLeft" align="right" valign="top">const char *const </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a4d420915043283204725c9014e02ba73">BamTools::Constants::BAM_HEADER_MAGIC</a> = "BAM\1"</td></tr>
<tr class="separator:a4d420915043283204725c9014e02ba73"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aa07a8f5b5806d868253dda7bf08f3516"><td class="memItemLeft" align="right" valign="top">const uint8_t </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#aa07a8f5b5806d868253dda7bf08f3516">BamTools::Constants::BAM_HEADER_MAGIC_LENGTH</a> = 4</td></tr>
<tr class="separator:aa07a8f5b5806d868253dda7bf08f3516"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a683a67e3dcf74ab031fc2da70befe686"><td class="memItemLeft" align="right" valign="top">const uint8_t </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a683a67e3dcf74ab031fc2da70befe686">BamTools::Constants::BAM_CORE_SIZE</a> = 32</td></tr>
<tr class="separator:a683a67e3dcf74ab031fc2da70befe686"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a4f333c53a00ae1b2f2cf24710f380de9"><td class="memItemLeft" align="right" valign="top">const uint8_t </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a4f333c53a00ae1b2f2cf24710f380de9">BamTools::Constants::BAM_CORE_BUFFER_SIZE</a> = 8</td></tr>
<tr class="separator:a4f333c53a00ae1b2f2cf24710f380de9"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a3f48cc7d5bc98ba489b5f93655006c83"><td class="memItemLeft" align="right" valign="top">const int </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a3f48cc7d5bc98ba489b5f93655006c83">BamTools::Constants::BAM_ALIGNMENT_PAIRED</a> = 0x0001</td></tr>
<tr class="separator:a3f48cc7d5bc98ba489b5f93655006c83"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:acf91d3f746dd27a9582730dde5065d1f"><td class="memItemLeft" align="right" valign="top">const int </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#acf91d3f746dd27a9582730dde5065d1f">BamTools::Constants::BAM_ALIGNMENT_PROPER_PAIR</a> = 0x0002</td></tr>
<tr class="separator:acf91d3f746dd27a9582730dde5065d1f"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a0af300f2f62e62839a888338e9009ada"><td class="memItemLeft" align="right" valign="top">const int </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a0af300f2f62e62839a888338e9009ada">BamTools::Constants::BAM_ALIGNMENT_UNMAPPED</a> = 0x0004</td></tr>
<tr class="separator:a0af300f2f62e62839a888338e9009ada"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aeb3c4065636d76514199ee8f8bb32ba0"><td class="memItemLeft" align="right" valign="top">const int </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#aeb3c4065636d76514199ee8f8bb32ba0">BamTools::Constants::BAM_ALIGNMENT_MATE_UNMAPPED</a> = 0x0008</td></tr>
<tr class="separator:aeb3c4065636d76514199ee8f8bb32ba0"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a942c3eb75b622e7da410107c22ee01dd"><td class="memItemLeft" align="right" valign="top">const int </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a942c3eb75b622e7da410107c22ee01dd">BamTools::Constants::BAM_ALIGNMENT_REVERSE_STRAND</a> = 0x0010</td></tr>
<tr class="separator:a942c3eb75b622e7da410107c22ee01dd"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ab80397a7feb8e03487a7bde45408eea0"><td class="memItemLeft" align="right" valign="top">const int </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#ab80397a7feb8e03487a7bde45408eea0">BamTools::Constants::BAM_ALIGNMENT_MATE_REVERSE_STRAND</a> = 0x0020</td></tr>
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<tr class="memitem:a8f879d2da352f2ada6f1cf232203fa00"><td class="memItemLeft" align="right" valign="top">const int </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a8f879d2da352f2ada6f1cf232203fa00">BamTools::Constants::BAM_ALIGNMENT_READ_1</a> = 0x0040</td></tr>
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<tr class="memitem:aa46eb732dfd824a85df2131cd0af0c51"><td class="memItemLeft" align="right" valign="top">const int </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#aa46eb732dfd824a85df2131cd0af0c51">BamTools::Constants::BAM_ALIGNMENT_READ_2</a> = 0x0080</td></tr>
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<tr class="memitem:a55cea93676b7c14b9f56c069feec81ae"><td class="memItemLeft" align="right" valign="top">const int </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a55cea93676b7c14b9f56c069feec81ae">BamTools::Constants::BAM_ALIGNMENT_SECONDARY</a> = 0x0100</td></tr>
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<tr class="memitem:a6fe3a16d10c529664c82a3c561dd0260"><td class="memItemLeft" align="right" valign="top">const int </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a6fe3a16d10c529664c82a3c561dd0260">BamTools::Constants::BAM_ALIGNMENT_QC_FAILED</a> = 0x0200</td></tr>
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<tr class="memitem:a37050e3b292a5b87c30bd374c429cfed"><td class="memItemLeft" align="right" valign="top">const int </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a37050e3b292a5b87c30bd374c429cfed">BamTools::Constants::BAM_ALIGNMENT_DUPLICATE</a> = 0x0400</td></tr>
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<tr class="memitem:a5df64e7330adc1a424c63a9df346b714"><td class="memItemLeft" align="right" valign="top">const char *const </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a5df64e7330adc1a424c63a9df346b714">BamTools::Constants::BAM_CIGAR_LOOKUP</a> = "MIDNSHP=X"</td></tr>
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<tr class="memitem:aa82388acae7dc4aa8419e38ea34907d0"><td class="memItemLeft" align="right" valign="top">const uint8_t </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#aa82388acae7dc4aa8419e38ea34907d0">BamTools::Constants::BAM_CIGAR_MATCH</a> = 0</td></tr>
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<tr class="memitem:a58358f7f33aff9bb47d3cebd6495cf46"><td class="memItemLeft" align="right" valign="top">const uint8_t </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a58358f7f33aff9bb47d3cebd6495cf46">BamTools::Constants::BAM_CIGAR_INS</a> = 1</td></tr>
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<tr class="memitem:a7416fc35d41b4eea72a07f8b4bf202ba"><td class="memItemLeft" align="right" valign="top">const uint8_t </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a7416fc35d41b4eea72a07f8b4bf202ba">BamTools::Constants::BAM_CIGAR_DEL</a> = 2</td></tr>
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<tr class="memitem:a2d143a0515309004325acf6de92d677d"><td class="memItemLeft" align="right" valign="top">const uint8_t </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a2d143a0515309004325acf6de92d677d">BamTools::Constants::BAM_CIGAR_REFSKIP</a> = 3</td></tr>
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<tr class="memitem:adf8b2798aa1bdbcf114f0322c8e3d3f8"><td class="memItemLeft" align="right" valign="top">const uint8_t </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#adf8b2798aa1bdbcf114f0322c8e3d3f8">BamTools::Constants::BAM_CIGAR_SOFTCLIP</a> = 4</td></tr>
<tr class="separator:adf8b2798aa1bdbcf114f0322c8e3d3f8"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:afca0644edb22a67ca38e2547df9d07de"><td class="memItemLeft" align="right" valign="top">const uint8_t </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#afca0644edb22a67ca38e2547df9d07de">BamTools::Constants::BAM_CIGAR_HARDCLIP</a> = 5</td></tr>
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<tr class="memitem:a2e275e65b17bd297c12e3fee1345308d"><td class="memItemLeft" align="right" valign="top">const uint8_t </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a2e275e65b17bd297c12e3fee1345308d">BamTools::Constants::BAM_CIGAR_PAD</a> = 6</td></tr>
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<tr class="memitem:a2d48281859778c215ac640b775958771"><td class="memItemLeft" align="right" valign="top">const uint8_t </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a2d48281859778c215ac640b775958771">BamTools::Constants::BAM_CIGAR_SEQMATCH</a> = 7</td></tr>
<tr class="separator:a2d48281859778c215ac640b775958771"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a15ed7a86971ec7829de7f711429546b7"><td class="memItemLeft" align="right" valign="top">const uint8_t </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a15ed7a86971ec7829de7f711429546b7">BamTools::Constants::BAM_CIGAR_MISMATCH</a> = 8</td></tr>
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<tr class="memitem:a49b43dd10eb1fb2797f6dc9563c72684"><td class="memItemLeft" align="right" valign="top">const char </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a49b43dd10eb1fb2797f6dc9563c72684">BamTools::Constants::BAM_CIGAR_MATCH_CHAR</a> = 'M'</td></tr>
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<tr class="memitem:a34b5b378b1c97f6c65e0b924e9e6eca3"><td class="memItemLeft" align="right" valign="top">const char </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a34b5b378b1c97f6c65e0b924e9e6eca3">BamTools::Constants::BAM_CIGAR_INS_CHAR</a> = 'I'</td></tr>
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<tr class="memitem:ab67f12cc6a7c8d5ad0d276d7ab73ed32"><td class="memItemLeft" align="right" valign="top">const char </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#ab67f12cc6a7c8d5ad0d276d7ab73ed32">BamTools::Constants::BAM_CIGAR_DEL_CHAR</a> = 'D'</td></tr>
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<tr class="memitem:ae1abd2b2a5af02ff5e2947006a314baa"><td class="memItemLeft" align="right" valign="top">const char </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#ae1abd2b2a5af02ff5e2947006a314baa">BamTools::Constants::BAM_CIGAR_REFSKIP_CHAR</a> = 'N'</td></tr>
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<tr class="memitem:a4c5fb54257c31e13169dbdfdec7ec9be"><td class="memItemLeft" align="right" valign="top">const char </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a4c5fb54257c31e13169dbdfdec7ec9be">BamTools::Constants::BAM_CIGAR_SOFTCLIP_CHAR</a> = 'S'</td></tr>
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<tr class="memitem:aeb8cfe26e4d02dd3147ef1535f22ab4b"><td class="memItemLeft" align="right" valign="top">const char </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#aeb8cfe26e4d02dd3147ef1535f22ab4b">BamTools::Constants::BAM_CIGAR_HARDCLIP_CHAR</a> = 'H'</td></tr>
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<tr class="memitem:a87cb872b98fac4e5bfa832c3b8b6d652"><td class="memItemLeft" align="right" valign="top">const char </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a87cb872b98fac4e5bfa832c3b8b6d652">BamTools::Constants::BAM_CIGAR_PAD_CHAR</a> = 'P'</td></tr>
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<tr class="memitem:a3ba73be6eb4d6f4b0b15d4496c069bdb"><td class="memItemLeft" align="right" valign="top">const char </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a3ba73be6eb4d6f4b0b15d4496c069bdb">BamTools::Constants::BAM_CIGAR_SEQMATCH_CHAR</a> = '='</td></tr>
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<tr class="memitem:a7fa8715e1c64c9afaaa76c6ad7275287"><td class="memItemLeft" align="right" valign="top">const char </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a7fa8715e1c64c9afaaa76c6ad7275287">BamTools::Constants::BAM_CIGAR_MISMATCH_CHAR</a> = 'X'</td></tr>
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<tr class="memitem:a2a8e9fd624e8d5e320c755f06452bfdc"><td class="memItemLeft" align="right" valign="top">const int </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a2a8e9fd624e8d5e320c755f06452bfdc">BamTools::Constants::BAM_CIGAR_SHIFT</a> = 4</td></tr>
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<tr class="memitem:a8e2e4a56c82f139cd47a520ed588a67c"><td class="memItemLeft" align="right" valign="top">const int </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a8e2e4a56c82f139cd47a520ed588a67c">BamTools::Constants::BAM_CIGAR_MASK</a> = ((1 << BAM_CIGAR_SHIFT) - 1)</td></tr>
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<tr class="memitem:a25602acbbce34e865d67d75b9966a4fc"><td class="memItemLeft" align="right" valign="top">const char </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a25602acbbce34e865d67d75b9966a4fc">BamTools::Constants::BAM_TAG_TYPE_ASCII</a> = 'A'</td></tr>
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<tr class="memitem:a8cb4f3703011f90521564830a7f7df01"><td class="memItemLeft" align="right" valign="top">const char </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a8cb4f3703011f90521564830a7f7df01">BamTools::Constants::BAM_TAG_TYPE_INT8</a> = 'c'</td></tr>
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<tr class="memitem:a0c4f77ed450936979e858e0703324dab"><td class="memItemLeft" align="right" valign="top">const char </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a0c4f77ed450936979e858e0703324dab">BamTools::Constants::BAM_TAG_TYPE_UINT8</a> = 'C'</td></tr>
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<tr class="memitem:aa51e6bf07e0ec1f00072477492d31a57"><td class="memItemLeft" align="right" valign="top">const char </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#aa51e6bf07e0ec1f00072477492d31a57">BamTools::Constants::BAM_TAG_TYPE_INT16</a> = 's'</td></tr>
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<tr class="memitem:a9b7df792a6c644788360152e2cf56a3c"><td class="memItemLeft" align="right" valign="top">const char </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a9b7df792a6c644788360152e2cf56a3c">BamTools::Constants::BAM_TAG_TYPE_UINT16</a> = 'S'</td></tr>
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<tr class="memitem:a20a298552510340fdc2b76c496186884"><td class="memItemLeft" align="right" valign="top">const char </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a20a298552510340fdc2b76c496186884">BamTools::Constants::BAM_TAG_TYPE_INT32</a> = 'i'</td></tr>
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<tr class="memitem:a657c724f6561af0520aa6c2f4c23f740"><td class="memItemLeft" align="right" valign="top">const char </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a657c724f6561af0520aa6c2f4c23f740">BamTools::Constants::BAM_TAG_TYPE_UINT32</a> = 'I'</td></tr>
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<tr class="memitem:a5f4b4689a7898fde204f9f3275a6bcdf"><td class="memItemLeft" align="right" valign="top">const char </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a5f4b4689a7898fde204f9f3275a6bcdf">BamTools::Constants::BAM_TAG_TYPE_FLOAT</a> = 'f'</td></tr>
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<tr class="memitem:a7f2d8fb36a83c9f0b14ec88100f69d62"><td class="memItemLeft" align="right" valign="top">const char </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a7f2d8fb36a83c9f0b14ec88100f69d62">BamTools::Constants::BAM_TAG_TYPE_STRING</a> = 'Z'</td></tr>
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<tr class="memitem:a1f432cf41f5c315f8da46f302ab9cdc4"><td class="memItemLeft" align="right" valign="top">const char </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a1f432cf41f5c315f8da46f302ab9cdc4">BamTools::Constants::BAM_TAG_TYPE_HEX</a> = 'H'</td></tr>
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<tr class="memitem:a53c2f04fc2e633f61e8f39264b6ad0b0"><td class="memItemLeft" align="right" valign="top">const char </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a53c2f04fc2e633f61e8f39264b6ad0b0">BamTools::Constants::BAM_TAG_TYPE_ARRAY</a> = 'B'</td></tr>
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<tr class="memitem:a4d1b3e2b26a9d163336a4a83c62b86b7"><td class="memItemLeft" align="right" valign="top">const uint8_t </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a4d1b3e2b26a9d163336a4a83c62b86b7">BamTools::Constants::BAM_TAG_TAGSIZE</a> = 2</td></tr>
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<tr class="memitem:ad0df071315bb6be4d088850ac4951a26"><td class="memItemLeft" align="right" valign="top">const uint8_t </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#ad0df071315bb6be4d088850ac4951a26">BamTools::Constants::BAM_TAG_TYPESIZE</a> = 1</td></tr>
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<tr class="memitem:aff396fa749e1439449433191eae166c7"><td class="memItemLeft" align="right" valign="top">const uint8_t </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#aff396fa749e1439449433191eae166c7">BamTools::Constants::BAM_TAG_ARRAYBASE_SIZE</a> = 8</td></tr>
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<tr class="memitem:a85a206d07dc03d3c54987e38ea9ebddb"><td class="memItemLeft" align="right" valign="top">const char *const </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a85a206d07dc03d3c54987e38ea9ebddb">BamTools::Constants::BAM_DNA_LOOKUP</a> = "=ACMGRSVTWYHKDBN"</td></tr>
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<tr class="memitem:a6b380ae8d3813f34d784ffe744009443"><td class="memItemLeft" align="right" valign="top">const uint8_t </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a6b380ae8d3813f34d784ffe744009443">BamTools::Constants::BAM_BASECODE_EQUAL</a> = 0</td></tr>
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<tr class="memitem:ac91f463b6a3b6df41b537cd4683b6bd4"><td class="memItemLeft" align="right" valign="top">const uint8_t </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#ac91f463b6a3b6df41b537cd4683b6bd4">BamTools::Constants::BAM_BASECODE_A</a> = 1</td></tr>
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<tr class="memitem:a4334def5a15ac8f47d44d5e1a736a2bd"><td class="memItemLeft" align="right" valign="top">const uint8_t </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a4334def5a15ac8f47d44d5e1a736a2bd">BamTools::Constants::BAM_BASECODE_C</a> = 2</td></tr>
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<tr class="memitem:a29e1115d2b79fc100ecab38adb40db67"><td class="memItemLeft" align="right" valign="top">const uint8_t </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a29e1115d2b79fc100ecab38adb40db67">BamTools::Constants::BAM_BASECODE_M</a> = 3</td></tr>
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<tr class="memitem:ae3415505557271c7b3482c37b6fe7095"><td class="memItemLeft" align="right" valign="top">const uint8_t </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#ae3415505557271c7b3482c37b6fe7095">BamTools::Constants::BAM_BASECODE_G</a> = 4</td></tr>
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<tr class="memitem:af58d5abf790943c6730e1709456d342a"><td class="memItemLeft" align="right" valign="top">const uint8_t </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#af58d5abf790943c6730e1709456d342a">BamTools::Constants::BAM_BASECODE_R</a> = 5</td></tr>
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<tr class="memitem:a10fad45bead6c1c0e05b7c7ccd67b8e3"><td class="memItemLeft" align="right" valign="top">const uint8_t </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a10fad45bead6c1c0e05b7c7ccd67b8e3">BamTools::Constants::BAM_BASECODE_S</a> = 6</td></tr>
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<tr class="memitem:a61c28e76e68e67316e96e5f11c23b2c1"><td class="memItemLeft" align="right" valign="top">const uint8_t </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a61c28e76e68e67316e96e5f11c23b2c1">BamTools::Constants::BAM_BASECODE_V</a> = 7</td></tr>
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<tr class="memitem:a4c4976bb95ab86fda4ebdc1af64488df"><td class="memItemLeft" align="right" valign="top">const uint8_t </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a4c4976bb95ab86fda4ebdc1af64488df">BamTools::Constants::BAM_BASECODE_T</a> = 8</td></tr>
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<tr class="memitem:a507d614e3a07eda97c51c9d5a4ed5d10"><td class="memItemLeft" align="right" valign="top">const uint8_t </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a507d614e3a07eda97c51c9d5a4ed5d10">BamTools::Constants::BAM_BASECODE_W</a> = 9</td></tr>
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<tr class="memitem:aa57cf890a2ac91ba279541f0e924ba0b"><td class="memItemLeft" align="right" valign="top">const uint8_t </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#aa57cf890a2ac91ba279541f0e924ba0b">BamTools::Constants::BAM_BASECODE_Y</a> = 10</td></tr>
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<tr class="memitem:aee9ce0c110739bf8bd3cdd28733ea0e1"><td class="memItemLeft" align="right" valign="top">const uint8_t </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#aee9ce0c110739bf8bd3cdd28733ea0e1">BamTools::Constants::BAM_BASECODE_H</a> = 11</td></tr>
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<tr class="memitem:a991fe0c7ab00edb8dcfcfb633010a55a"><td class="memItemLeft" align="right" valign="top">const uint8_t </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a991fe0c7ab00edb8dcfcfb633010a55a">BamTools::Constants::BAM_BASECODE_K</a> = 12</td></tr>
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<tr class="memitem:aac93d588e3bb076ffe14dc8719d0597b"><td class="memItemLeft" align="right" valign="top">const uint8_t </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#aac93d588e3bb076ffe14dc8719d0597b">BamTools::Constants::BAM_BASECODE_D</a> = 13</td></tr>
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<tr class="memitem:a4adb27270a66ea6874aaa4f27623c0ce"><td class="memItemLeft" align="right" valign="top">const uint8_t </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a4adb27270a66ea6874aaa4f27623c0ce">BamTools::Constants::BAM_BASECODE_B</a> = 14</td></tr>
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<tr class="memitem:a395d8a5eff77f3abb53b0d2bf2952e0d"><td class="memItemLeft" align="right" valign="top">const uint8_t </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a395d8a5eff77f3abb53b0d2bf2952e0d">BamTools::Constants::BAM_BASECODE_N</a> = 15</td></tr>
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<tr class="memitem:ae670ade3f5071f0744471c7adcb74ba9"><td class="memItemLeft" align="right" valign="top">const char </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#ae670ade3f5071f0744471c7adcb74ba9">BamTools::Constants::BAM_DNA_EQUAL</a> = '='</td></tr>
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<tr class="memitem:a6c0e3b4f5135b1fa1e04f09a9dc6cb8c"><td class="memItemLeft" align="right" valign="top">const char </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a6c0e3b4f5135b1fa1e04f09a9dc6cb8c">BamTools::Constants::BAM_DNA_A</a> = 'A'</td></tr>
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<tr class="memitem:a9453e08466bafe404192c37740d8b774"><td class="memItemLeft" align="right" valign="top">const char </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a9453e08466bafe404192c37740d8b774">BamTools::Constants::BAM_DNA_C</a> = 'C'</td></tr>
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<tr class="memitem:abf94325163a7b82ea416e5f972480ec5"><td class="memItemLeft" align="right" valign="top">const char </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#abf94325163a7b82ea416e5f972480ec5">BamTools::Constants::BAM_DNA_M</a> = 'M'</td></tr>
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<tr class="memitem:a38de013d628dfdc78ce5c3ebb7cd01ba"><td class="memItemLeft" align="right" valign="top">const char </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a38de013d628dfdc78ce5c3ebb7cd01ba">BamTools::Constants::BAM_DNA_G</a> = 'G'</td></tr>
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<tr class="memitem:a58a542eed79ee707009dd28ed3ace18a"><td class="memItemLeft" align="right" valign="top">const char </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a58a542eed79ee707009dd28ed3ace18a">BamTools::Constants::BAM_DNA_R</a> = 'R'</td></tr>
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<tr class="memitem:a8619efce7bc47c02d7ca8a9ffa27f5e4"><td class="memItemLeft" align="right" valign="top">const char </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a8619efce7bc47c02d7ca8a9ffa27f5e4">BamTools::Constants::BAM_DNA_S</a> = 'S'</td></tr>
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<tr class="memitem:a29542377dc9e447eb458eb115b4cf2a2"><td class="memItemLeft" align="right" valign="top">const char </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a29542377dc9e447eb458eb115b4cf2a2">BamTools::Constants::BAM_DNA_V</a> = 'V'</td></tr>
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<tr class="memitem:a2cc240013a9c3f6b19c271a088c60e86"><td class="memItemLeft" align="right" valign="top">const char </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a2cc240013a9c3f6b19c271a088c60e86">BamTools::Constants::BAM_DNA_T</a> = 'T'</td></tr>
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<tr class="memitem:adee5ad65de905fc005c1e60cad193d97"><td class="memItemLeft" align="right" valign="top">const char </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#adee5ad65de905fc005c1e60cad193d97">BamTools::Constants::BAM_DNA_W</a> = 'W'</td></tr>
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<tr class="memitem:afbc767b14d3318295a754112881ca64a"><td class="memItemLeft" align="right" valign="top">const char </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#afbc767b14d3318295a754112881ca64a">BamTools::Constants::BAM_DNA_Y</a> = 'Y'</td></tr>
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<tr class="memitem:a16e28e4f2f2a2c7de27d5184fefa1b75"><td class="memItemLeft" align="right" valign="top">const char </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a16e28e4f2f2a2c7de27d5184fefa1b75">BamTools::Constants::BAM_DNA_H</a> = 'H'</td></tr>
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<tr class="memitem:a5a57c248035362eba166d501c5792dc3"><td class="memItemLeft" align="right" valign="top">const char </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a5a57c248035362eba166d501c5792dc3">BamTools::Constants::BAM_DNA_K</a> = 'K'</td></tr>
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<tr class="memitem:a226bb4b1b71d17c473fac07b0f415726"><td class="memItemLeft" align="right" valign="top">const char </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a226bb4b1b71d17c473fac07b0f415726">BamTools::Constants::BAM_DNA_D</a> = 'D'</td></tr>
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<tr class="memitem:a3952ee2392a20ff0fecc0e23e6dbd824"><td class="memItemLeft" align="right" valign="top">const char </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a3952ee2392a20ff0fecc0e23e6dbd824">BamTools::Constants::BAM_DNA_B</a> = 'B'</td></tr>
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<tr class="memitem:a151bb15603efbe324e95fc2a92629c15"><td class="memItemLeft" align="right" valign="top">const char </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a151bb15603efbe324e95fc2a92629c15">BamTools::Constants::BAM_DNA_N</a> = 'N'</td></tr>
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<tr class="memitem:a4b2587bfc495ede245b2ca396efdd98b"><td class="memItemLeft" align="right" valign="top">const char </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a4b2587bfc495ede245b2ca396efdd98b">BamTools::Constants::BAM_DNA_DEL</a> = '-'</td></tr>
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<tr class="memitem:ac6b15e4b7dc580741f2e38207a1f828a"><td class="memItemLeft" align="right" valign="top">const char </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#ac6b15e4b7dc580741f2e38207a1f828a">BamTools::Constants::BAM_DNA_PAD</a> = '*'</td></tr>
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<tr class="memitem:aee658df0c9d9f30f0526649dd47d070a"><td class="memItemLeft" align="right" valign="top">const char </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#aee658df0c9d9f30f0526649dd47d070a">BamTools::Constants::GZIP_ID1</a> = 31</td></tr>
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<tr class="memitem:af2f43258da96e8f108ef9840af01b28c"><td class="memItemLeft" align="right" valign="top">const char </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#af2f43258da96e8f108ef9840af01b28c">BamTools::Constants::GZIP_ID2</a> = 139</td></tr>
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<tr class="memitem:a1002dc50cdf3efd08d7948bbfcaf358c"><td class="memItemLeft" align="right" valign="top">const char </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a1002dc50cdf3efd08d7948bbfcaf358c">BamTools::Constants::CM_DEFLATE</a> = 8</td></tr>
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<tr class="memitem:a70b443f3505285dfb1fea8eb6f30152e"><td class="memItemLeft" align="right" valign="top">const char </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a70b443f3505285dfb1fea8eb6f30152e">BamTools::Constants::FLG_FEXTRA</a> = 4</td></tr>
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<tr class="memitem:ae0b04e3c24a621fa9c8aca9593640087"><td class="memItemLeft" align="right" valign="top">const char </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#ae0b04e3c24a621fa9c8aca9593640087">BamTools::Constants::OS_UNKNOWN</a> = 255</td></tr>
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<tr class="memitem:a3aa314e8e6c6b9aba278f2347681e0dd"><td class="memItemLeft" align="right" valign="top">const char </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a3aa314e8e6c6b9aba278f2347681e0dd">BamTools::Constants::BGZF_XLEN</a> = 6</td></tr>
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<tr class="memitem:a93fe5fe12388a82e8fb9a13acda975b6"><td class="memItemLeft" align="right" valign="top">const char </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a93fe5fe12388a82e8fb9a13acda975b6">BamTools::Constants::BGZF_ID1</a> = 66</td></tr>
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<tr class="memitem:ab052aa80fdea15328df2079c45869069"><td class="memItemLeft" align="right" valign="top">const char </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#ab052aa80fdea15328df2079c45869069">BamTools::Constants::BGZF_ID2</a> = 67</td></tr>
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<tr class="memitem:a447858f9f04354ecb4fc44f459b2e454"><td class="memItemLeft" align="right" valign="top">const char </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a447858f9f04354ecb4fc44f459b2e454">BamTools::Constants::BGZF_LEN</a> = 2</td></tr>
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<tr class="memitem:ac389ed90be1ed547275053e91574c05c"><td class="memItemLeft" align="right" valign="top">const int8_t </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#ac389ed90be1ed547275053e91574c05c">BamTools::Constants::GZIP_WINDOW_BITS</a> = -15</td></tr>
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<tr class="memitem:a7e609a2244b193c11b17f045322c6638"><td class="memItemLeft" align="right" valign="top">const int8_t </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a7e609a2244b193c11b17f045322c6638">BamTools::Constants::Z_DEFAULT_MEM_LEVEL</a> = 8</td></tr>
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<tr class="memitem:a8bbc003086d82fb6ee96a23f21629359"><td class="memItemLeft" align="right" valign="top">const uint8_t </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a8bbc003086d82fb6ee96a23f21629359">BamTools::Constants::BGZF_BLOCK_HEADER_LENGTH</a> = 18</td></tr>
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<tr class="memitem:a304dd2e0508b256210d337020fa3e799"><td class="memItemLeft" align="right" valign="top">const uint8_t </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a304dd2e0508b256210d337020fa3e799">BamTools::Constants::BGZF_BLOCK_FOOTER_LENGTH</a> = 8</td></tr>
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<tr class="memitem:a862e9d172c9874c27977a8cd33550e75"><td class="memItemLeft" align="right" valign="top">const uint32_t </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a862e9d172c9874c27977a8cd33550e75">BamTools::Constants::BGZF_MAX_BLOCK_SIZE</a> = 65536</td></tr>
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<tr class="memitem:a203c88971271d392d7a1827bf9ac539c"><td class="memItemLeft" align="right" valign="top">const uint32_t </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools_1_1_constants.html#a203c88971271d392d7a1827bf9ac539c">BamTools::Constants::BGZF_DEFAULT_BLOCK_SIZE</a> = 65536</td></tr>
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