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<a href="_sam_constants_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> <span class="comment">// ***************************************************************************</span></div><div class="line"><a name="l00002"></a><span class="lineno"> 2</span> <span class="comment">// SamConstants.h (c) 2010 Derek Barnett</span></div><div class="line"><a name="l00003"></a><span class="lineno"> 3</span> <span class="comment">// Marth Lab, Department of Biology, Boston College</span></div><div class="line"><a name="l00004"></a><span class="lineno"> 4</span> <span class="comment">// ---------------------------------------------------------------------------</span></div><div class="line"><a name="l00005"></a><span class="lineno"> 5</span> <span class="comment">// Last modified: 27 March 2012 (DB)</span></div><div class="line"><a name="l00006"></a><span class="lineno"> 6</span> <span class="comment">// ---------------------------------------------------------------------------</span></div><div class="line"><a name="l00007"></a><span class="lineno"> 7</span> <span class="comment">// Provides constants for SAM header</span></div><div class="line"><a name="l00008"></a><span class="lineno"> 8</span> <span class="comment">// ***************************************************************************</span></div><div class="line"><a name="l00009"></a><span class="lineno"> 9</span> </div><div class="line"><a name="l00010"></a><span class="lineno"> 10</span> <span class="preprocessor">#ifndef SAM_CONSTANTS_H</span></div><div class="line"><a name="l00011"></a><span class="lineno"> 11</span> <span class="preprocessor">#define SAM_CONSTANTS_H</span></div><div class="line"><a name="l00012"></a><span class="lineno"> 12</span> </div><div class="line"><a name="l00013"></a><span class="lineno"> 13</span> <span class="preprocessor">#include "<a class="code" href="api__global_8h.html">api/api_global.h</a>"</span></div><div class="line"><a name="l00014"></a><span class="lineno"> 14</span> <span class="preprocessor">#include <string></span></div><div class="line"><a name="l00015"></a><span class="lineno"> 15</span> </div><div class="line"><a name="l00016"></a><span class="lineno"> 16</span> <span class="keyword">namespace </span><a class="code" href="namespace_bam_tools.html">BamTools</a> {</div><div class="line"><a name="l00017"></a><span class="lineno"> 17</span> <span class="keyword">namespace </span>Constants {</div><div class="line"><a name="l00018"></a><span class="lineno"> 18</span> </div><div class="line"><a name="l00019"></a><span class="lineno"> 19</span> <span class="comment">// basic char constants used in SAM format</span></div><div class="line"><a name="l00020"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a4dc947cf37ccd2db26a2e6f495d0b7b3"> 20</a></span> <span class="keyword">const</span> <span class="keywordtype">char</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#a4dc947cf37ccd2db26a2e6f495d0b7b3">SAM_COLON</a> = <span class="charliteral">':'</span>;</div><div class="line"><a name="l00021"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#af1760b7edfc1298b8933e46d7a6e85ba"> 21</a></span> <span class="keyword">const</span> <span class="keywordtype">char</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#af1760b7edfc1298b8933e46d7a6e85ba">SAM_EQUAL</a> = <span class="charliteral">'='</span>;</div><div class="line"><a name="l00022"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a04941ea1a9a44bf6b99cbf9f182d1e67"> 22</a></span> <span class="keyword">const</span> <span class="keywordtype">char</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#a04941ea1a9a44bf6b99cbf9f182d1e67">SAM_PERIOD</a> = <span class="charliteral">'.'</span>;</div><div class="line"><a name="l00023"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#ae61b05f20c74192ed3e962d6a629fd2e"> 23</a></span> <span class="keyword">const</span> <span class="keywordtype">char</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#ae61b05f20c74192ed3e962d6a629fd2e">SAM_STAR</a> = <span class="charliteral">'*'</span>;</div><div class="line"><a name="l00024"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#ad03ece1e8f540a42ee36e0eb833d12b3"> 24</a></span> <span class="keyword">const</span> <span class="keywordtype">char</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#ad03ece1e8f540a42ee36e0eb833d12b3">SAM_TAB</a> = <span class="charliteral">'\t'</span>;</div><div class="line"><a name="l00025"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a996b57e1830ec53e3df7a7e1f1e80ae2"> 25</a></span> <span class="keyword">const</span> std::string <a class="code" href="namespace_bam_tools_1_1_constants.html#a996b57e1830ec53e3df7a7e1f1e80ae2">SAM_DIGITS</a> = <span class="stringliteral">"0123456789"</span>;</div><div class="line"><a name="l00026"></a><span class="lineno"> 26</span> </div><div class="line"><a name="l00027"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a095be7b2fdb244feccdd82528d292859"> 27</a></span> <span class="keyword">const</span> std::string <a class="code" href="namespace_bam_tools_1_1_constants.html#a095be7b2fdb244feccdd82528d292859">SAM_CURRENT_VERSION</a> = <span class="stringliteral">"1.4"</span>;</div><div class="line"><a name="l00028"></a><span class="lineno"> 28</span> </div><div class="line"><a name="l00029"></a><span class="lineno"> 29</span> <span class="comment">// HD entries</span></div><div class="line"><a name="l00030"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#aee6159dc6e3f7209fa732f5bc9294544"> 30</a></span> <span class="keyword">const</span> std::string <a class="code" href="namespace_bam_tools_1_1_constants.html#aee6159dc6e3f7209fa732f5bc9294544">SAM_HD_BEGIN_TOKEN</a> = <span class="stringliteral">"@HD"</span>;</div><div class="line"><a name="l00031"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a0883710c1fbb37c6963ebee0ccb101eb"> 31</a></span> <span class="keyword">const</span> std::string <a class="code" href="namespace_bam_tools_1_1_constants.html#a0883710c1fbb37c6963ebee0ccb101eb">SAM_HD_VERSION_TAG</a> = <span class="stringliteral">"VN"</span>;</div><div class="line"><a name="l00032"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a0f0b211aeda8c3464f48352bf4e3b82f"> 32</a></span> <span class="keyword">const</span> std::string <a class="code" href="namespace_bam_tools_1_1_constants.html#a0f0b211aeda8c3464f48352bf4e3b82f">SAM_HD_SORTORDER_TAG</a> = <span class="stringliteral">"SO"</span>;</div><div class="line"><a name="l00033"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#af3042c03a4b7fefcb14d1f819c81afe8"> 33</a></span> <span class="keyword">const</span> std::string <a class="code" href="namespace_bam_tools_1_1_constants.html#af3042c03a4b7fefcb14d1f819c81afe8">SAM_HD_GROUPORDER_TAG</a> = <span class="stringliteral">"GO"</span>;</div><div class="line"><a name="l00034"></a><span class="lineno"> 34</span> </div><div class="line"><a name="l00035"></a><span class="lineno"> 35</span> <span class="comment">// SQ entries</span></div><div class="line"><a name="l00036"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a1137bdeb0d037ed4d6cde982a53d86ec"> 36</a></span> <span class="keyword">const</span> std::string <a class="code" href="namespace_bam_tools_1_1_constants.html#a1137bdeb0d037ed4d6cde982a53d86ec">SAM_SQ_BEGIN_TOKEN</a> = <span class="stringliteral">"@SQ"</span>;</div><div class="line"><a name="l00037"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#afa271493666987fe6adcc1622ab53f21"> 37</a></span> <span class="keyword">const</span> std::string <a class="code" href="namespace_bam_tools_1_1_constants.html#afa271493666987fe6adcc1622ab53f21">SAM_SQ_ASSEMBLYID_TAG</a> = <span class="stringliteral">"AS"</span>;</div><div class="line"><a name="l00038"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#ad06d1bfea017d27dc4c5bb881053c125"> 38</a></span> <span class="keyword">const</span> std::string <a class="code" href="namespace_bam_tools_1_1_constants.html#ad06d1bfea017d27dc4c5bb881053c125">SAM_SQ_CHECKSUM_TAG</a> = <span class="stringliteral">"M5"</span>;</div><div class="line"><a name="l00039"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a33200e721ce47ea5b3c3f868398556fe"> 39</a></span> <span class="keyword">const</span> std::string <a class="code" href="namespace_bam_tools_1_1_constants.html#a33200e721ce47ea5b3c3f868398556fe">SAM_SQ_LENGTH_TAG</a> = <span class="stringliteral">"LN"</span>;</div><div class="line"><a name="l00040"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a4f7f64cbf1b9867dd1c17065d4bf9164"> 40</a></span> <span class="keyword">const</span> std::string <a class="code" href="namespace_bam_tools_1_1_constants.html#a4f7f64cbf1b9867dd1c17065d4bf9164">SAM_SQ_NAME_TAG</a> = <span class="stringliteral">"SN"</span>;</div><div class="line"><a name="l00041"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#aeb9b3527c516157653a1aa021e7a4cb1"> 41</a></span> <span class="keyword">const</span> std::string <a class="code" href="namespace_bam_tools_1_1_constants.html#aeb9b3527c516157653a1aa021e7a4cb1">SAM_SQ_SPECIES_TAG</a> = <span class="stringliteral">"SP"</span>;</div><div class="line"><a name="l00042"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#aab2777c1038ee71bf8d88e016fabd033"> 42</a></span> <span class="keyword">const</span> std::string <a class="code" href="namespace_bam_tools_1_1_constants.html#aab2777c1038ee71bf8d88e016fabd033">SAM_SQ_URI_TAG</a> = <span class="stringliteral">"UR"</span>;</div><div class="line"><a name="l00043"></a><span class="lineno"> 43</span> </div><div class="line"><a name="l00044"></a><span class="lineno"> 44</span> <span class="comment">// RG entries</span></div><div class="line"><a name="l00045"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a44454cde3e36ea93dfde57976a028090"> 45</a></span> <span class="keyword">const</span> std::string <a class="code" href="namespace_bam_tools_1_1_constants.html#a44454cde3e36ea93dfde57976a028090">SAM_RG_BEGIN_TOKEN</a> = <span class="stringliteral">"@RG"</span>;</div><div class="line"><a name="l00046"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a77caaa01b98ab47c02643388e5831f4f"> 46</a></span> <span class="keyword">const</span> std::string <a class="code" href="namespace_bam_tools_1_1_constants.html#a77caaa01b98ab47c02643388e5831f4f">SAM_RG_DESCRIPTION_TAG</a> = <span class="stringliteral">"DS"</span>;</div><div class="line"><a name="l00047"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#abd030018d924800a554e2d179b62d694"> 47</a></span> <span class="keyword">const</span> std::string <a class="code" href="namespace_bam_tools_1_1_constants.html#abd030018d924800a554e2d179b62d694">SAM_RG_FLOWORDER_TAG</a> = <span class="stringliteral">"FO"</span>;</div><div class="line"><a name="l00048"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#aea7734f1ca755214acd4c757df25f6d4"> 48</a></span> <span class="keyword">const</span> std::string <a class="code" href="namespace_bam_tools_1_1_constants.html#aea7734f1ca755214acd4c757df25f6d4">SAM_RG_ID_TAG</a> = <span class="stringliteral">"ID"</span>;</div><div class="line"><a name="l00049"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a50d3a40383afffd6a37a878388b36c29"> 49</a></span> <span class="keyword">const</span> std::string <a class="code" href="namespace_bam_tools_1_1_constants.html#a50d3a40383afffd6a37a878388b36c29">SAM_RG_KEYSEQUENCE_TAG</a> = <span class="stringliteral">"KS"</span>;</div><div class="line"><a name="l00050"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a5420ec349bd3fa2ba1c32ab750fd6718"> 50</a></span> <span class="keyword">const</span> std::string <a class="code" href="namespace_bam_tools_1_1_constants.html#a5420ec349bd3fa2ba1c32ab750fd6718">SAM_RG_LIBRARY_TAG</a> = <span class="stringliteral">"LB"</span>;</div><div class="line"><a name="l00051"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a95e5e09f71b636ea4a65a5897b34afa0"> 51</a></span> <span class="keyword">const</span> std::string <a class="code" href="namespace_bam_tools_1_1_constants.html#a95e5e09f71b636ea4a65a5897b34afa0">SAM_RG_PLATFORMUNIT_TAG</a> = <span class="stringliteral">"PU"</span>;</div><div class="line"><a name="l00052"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a80b33283c1c7c233227b4131e78ebd33"> 52</a></span> <span class="keyword">const</span> std::string <a class="code" href="namespace_bam_tools_1_1_constants.html#a80b33283c1c7c233227b4131e78ebd33">SAM_RG_PREDICTEDINSERTSIZE_TAG</a> = <span class="stringliteral">"PI"</span>;</div><div class="line"><a name="l00053"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a4201e2b0e8de121b95826e6e82cb93e7"> 53</a></span> <span class="keyword">const</span> std::string <a class="code" href="namespace_bam_tools_1_1_constants.html#a4201e2b0e8de121b95826e6e82cb93e7">SAM_RG_PRODUCTIONDATE_TAG</a> = <span class="stringliteral">"DT"</span>;</div><div class="line"><a name="l00054"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#afe3a74734ff2ea5f8e5a47e4cd92acf7"> 54</a></span> <span class="keyword">const</span> std::string <a class="code" href="namespace_bam_tools_1_1_constants.html#afe3a74734ff2ea5f8e5a47e4cd92acf7">SAM_RG_PROGRAM_TAG</a> = <span class="stringliteral">"PG"</span>;</div><div class="line"><a name="l00055"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a0d517424c42c32b0cac1ab06d42c3ee4"> 55</a></span> <span class="keyword">const</span> std::string <a class="code" href="namespace_bam_tools_1_1_constants.html#a0d517424c42c32b0cac1ab06d42c3ee4">SAM_RG_SAMPLE_TAG</a> = <span class="stringliteral">"SM"</span>;</div><div class="line"><a name="l00056"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#aa5e30b73707ee51e927d4f6a1d53f536"> 56</a></span> <span class="keyword">const</span> std::string <a class="code" href="namespace_bam_tools_1_1_constants.html#aa5e30b73707ee51e927d4f6a1d53f536">SAM_RG_SEQCENTER_TAG</a> = <span class="stringliteral">"CN"</span>;</div><div class="line"><a name="l00057"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a94c416f9cc9c0fde5f4ceb8ce454bee1"> 57</a></span> <span class="keyword">const</span> std::string <a class="code" href="namespace_bam_tools_1_1_constants.html#a94c416f9cc9c0fde5f4ceb8ce454bee1">SAM_RG_SEQTECHNOLOGY_TAG</a> = <span class="stringliteral">"PL"</span>;</div><div class="line"><a name="l00058"></a><span class="lineno"> 58</span> </div><div class="line"><a name="l00059"></a><span class="lineno"> 59</span> <span class="comment">// PG entries</span></div><div class="line"><a name="l00060"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a0ed9a275357e92bbb4dcc03df3f84ccc"> 60</a></span> <span class="keyword">const</span> std::string <a class="code" href="namespace_bam_tools_1_1_constants.html#a0ed9a275357e92bbb4dcc03df3f84ccc">SAM_PG_BEGIN_TOKEN</a> = <span class="stringliteral">"@PG"</span>;</div><div class="line"><a name="l00061"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#ac818a5c5c7910329242c5f3c326a53d3"> 61</a></span> <span class="keyword">const</span> std::string <a class="code" href="namespace_bam_tools_1_1_constants.html#ac818a5c5c7910329242c5f3c326a53d3">SAM_PG_COMMANDLINE_TAG</a> = <span class="stringliteral">"CL"</span>;</div><div class="line"><a name="l00062"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a50cd815bb5dbb11ee5c8d8abdd83ec39"> 62</a></span> <span class="keyword">const</span> std::string <a class="code" href="namespace_bam_tools_1_1_constants.html#a50cd815bb5dbb11ee5c8d8abdd83ec39">SAM_PG_ID_TAG</a> = <span class="stringliteral">"ID"</span>;</div><div class="line"><a name="l00063"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a6e605af26908592f00b06588bd47ea5d"> 63</a></span> <span class="keyword">const</span> std::string <a class="code" href="namespace_bam_tools_1_1_constants.html#a6e605af26908592f00b06588bd47ea5d">SAM_PG_NAME_TAG</a> = <span class="stringliteral">"PN"</span>;</div><div class="line"><a name="l00064"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a13b1d3b04b9db66bab3976aac383f52d"> 64</a></span> <span class="keyword">const</span> std::string <a class="code" href="namespace_bam_tools_1_1_constants.html#a13b1d3b04b9db66bab3976aac383f52d">SAM_PG_PREVIOUSPROGRAM_TAG</a> = <span class="stringliteral">"PP"</span>;</div><div class="line"><a name="l00065"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#ac7fc329a6ec0fd91da34f85cfa64c954"> 65</a></span> <span class="keyword">const</span> std::string <a class="code" href="namespace_bam_tools_1_1_constants.html#ac7fc329a6ec0fd91da34f85cfa64c954">SAM_PG_VERSION_TAG</a> = <span class="stringliteral">"VN"</span>;</div><div class="line"><a name="l00066"></a><span class="lineno"> 66</span> </div><div class="line"><a name="l00067"></a><span class="lineno"> 67</span> <span class="comment">// CO entries</span></div><div class="line"><a name="l00068"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a9fa23d8339b7180dc4d950cab40c5a4a"> 68</a></span> <span class="keyword">const</span> std::string <a class="code" href="namespace_bam_tools_1_1_constants.html#a9fa23d8339b7180dc4d950cab40c5a4a">SAM_CO_BEGIN_TOKEN</a> = <span class="stringliteral">"@CO"</span>;</div><div class="line"><a name="l00069"></a><span class="lineno"> 69</span> </div><div class="line"><a name="l00070"></a><span class="lineno"> 70</span> <span class="comment">// HD:SO values</span></div><div class="line"><a name="l00071"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a6474731ad6aafec1930e54dd3e6922a8"> 71</a></span> <span class="keyword">const</span> std::string <a class="code" href="namespace_bam_tools_1_1_constants.html#a6474731ad6aafec1930e54dd3e6922a8">SAM_HD_SORTORDER_COORDINATE</a> = <span class="stringliteral">"coordinate"</span>;</div><div class="line"><a name="l00072"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a09820f6d6eb58028bc29ef855604d634"> 72</a></span> <span class="keyword">const</span> std::string <a class="code" href="namespace_bam_tools_1_1_constants.html#a09820f6d6eb58028bc29ef855604d634">SAM_HD_SORTORDER_QUERYNAME</a> = <span class="stringliteral">"queryname"</span>;</div><div class="line"><a name="l00073"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a51e7e505a0b484e512783270e889c43f"> 73</a></span> <span class="keyword">const</span> std::string <a class="code" href="namespace_bam_tools_1_1_constants.html#a51e7e505a0b484e512783270e889c43f">SAM_HD_SORTORDER_UNKNOWN</a> = <span class="stringliteral">"unknown"</span>;</div><div class="line"><a name="l00074"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a2a0a356ccd7f3b6f74770486a0445faf"> 74</a></span> <span class="keyword">const</span> std::string <a class="code" href="namespace_bam_tools_1_1_constants.html#a2a0a356ccd7f3b6f74770486a0445faf">SAM_HD_SORTORDER_UNSORTED</a> = <span class="stringliteral">"unsorted"</span>;</div><div class="line"><a name="l00075"></a><span class="lineno"> 75</span> </div><div class="line"><a name="l00076"></a><span class="lineno"> 76</span> <span class="comment">// HD:GO values</span></div><div class="line"><a name="l00077"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a397b6fe77af0e5b1bf1ecd74267b65d8"> 77</a></span> <span class="keyword">const</span> std::string <a class="code" href="namespace_bam_tools_1_1_constants.html#a397b6fe77af0e5b1bf1ecd74267b65d8">SAM_HD_GROUPORDER_NONE</a> = <span class="stringliteral">"none"</span>;</div><div class="line"><a name="l00078"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a9e0b09f1e709a961a5a8619e7e2f4264"> 78</a></span> <span class="keyword">const</span> std::string <a class="code" href="namespace_bam_tools_1_1_constants.html#a9e0b09f1e709a961a5a8619e7e2f4264">SAM_HD_GROUPORDER_QUERY</a> = <span class="stringliteral">"query"</span>;</div><div class="line"><a name="l00079"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a5bf78a6e49cc46255bded799ea0c1f3a"> 79</a></span> <span class="keyword">const</span> std::string <a class="code" href="namespace_bam_tools_1_1_constants.html#a5bf78a6e49cc46255bded799ea0c1f3a">SAM_HD_GROUPORDER_REFERENCE</a> = <span class="stringliteral">"reference"</span>;</div><div class="line"><a name="l00080"></a><span class="lineno"> 80</span> </div><div class="line"><a name="l00081"></a><span class="lineno"> 81</span> <span class="comment">// SQ:LN values</span></div><div class="line"><a name="l00082"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#add952cff9084af884308a80c372288d8"> 82</a></span> <span class="keyword">const</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#add952cff9084af884308a80c372288d8">SAM_SQ_LENGTH_MIN</a> = 1;</div><div class="line"><a name="l00083"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a6d3d5247b25a5464b1faec04624ed604"> 83</a></span> <span class="keyword">const</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#a6d3d5247b25a5464b1faec04624ed604">SAM_SQ_LENGTH_MAX</a> = 536870911; <span class="comment">// 2^29 - 1</span></div><div class="line"><a name="l00084"></a><span class="lineno"> 84</span> </div><div class="line"><a name="l00085"></a><span class="lineno"> 85</span> <span class="comment">// RG:PL values</span></div><div class="line"><a name="l00086"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a9a3f6e2e146280a3491d67b60a4660f2"> 86</a></span> <span class="keyword">const</span> std::string <a class="code" href="namespace_bam_tools_1_1_constants.html#a9a3f6e2e146280a3491d67b60a4660f2">SAM_RG_SEQTECHNOLOGY_CAPILLARY</a> = <span class="stringliteral">"CAPILLARY"</span>;</div><div class="line"><a name="l00087"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a6973f23643e98e63c830875b00248b25"> 87</a></span> <span class="keyword">const</span> std::string <a class="code" href="namespace_bam_tools_1_1_constants.html#a6973f23643e98e63c830875b00248b25">SAM_RG_SEQTECHNOLOGY_HELICOS</a> = <span class="stringliteral">"HELICOS"</span>;</div><div class="line"><a name="l00088"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a420e24c36fef988522dfe4f444845f8d"> 88</a></span> <span class="keyword">const</span> std::string <a class="code" href="namespace_bam_tools_1_1_constants.html#a420e24c36fef988522dfe4f444845f8d">SAM_RG_SEQTECHNOLOGY_ILLUMINA</a> = <span class="stringliteral">"ILLUMINA"</span>;</div><div class="line"><a name="l00089"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#aa27d63d2957b18174007b7600a541af4"> 89</a></span> <span class="keyword">const</span> std::string <a class="code" href="namespace_bam_tools_1_1_constants.html#aa27d63d2957b18174007b7600a541af4">SAM_RG_SEQTECHNOLOGY_IONTORRENT</a> = <span class="stringliteral">"IONTORRENT"</span>;</div><div class="line"><a name="l00090"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#aae01cde6c677be076673143a1ca3343e"> 90</a></span> <span class="keyword">const</span> std::string <a class="code" href="namespace_bam_tools_1_1_constants.html#aae01cde6c677be076673143a1ca3343e">SAM_RG_SEQTECHNOLOGY_LS454</a> = <span class="stringliteral">"LS454"</span>;</div><div class="line"><a name="l00091"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#aa4a7724701b8368f98fdb92dd799e102"> 91</a></span> <span class="keyword">const</span> std::string <a class="code" href="namespace_bam_tools_1_1_constants.html#aa4a7724701b8368f98fdb92dd799e102">SAM_RG_SEQTECHNOLOGY_PACBIO</a> = <span class="stringliteral">"PACBIO"</span>;</div><div class="line"><a name="l00092"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#adc82798d04d6b2f45d03fece39d350a0"> 92</a></span> <span class="keyword">const</span> std::string <a class="code" href="namespace_bam_tools_1_1_constants.html#adc82798d04d6b2f45d03fece39d350a0">SAM_RG_SEQTECHNOLOGY_SOLID</a> = <span class="stringliteral">"SOLID"</span>;</div><div class="line"><a name="l00093"></a><span class="lineno"> 93</span> </div><div class="line"><a name="l00094"></a><span class="lineno"> 94</span> } <span class="comment">// namespace Constants</span></div><div class="line"><a name="l00095"></a><span class="lineno"> 95</span> } <span class="comment">// namespace BamTools</span></div><div class="line"><a name="l00096"></a><span class="lineno"> 96</span> </div><div class="line"><a name="l00097"></a><span class="lineno"> 97</span> <span class="preprocessor">#endif // SAM_CONSTANTS_H</span></div><div class="ttc" id="namespace_bam_tools_1_1_constants_html_a6973f23643e98e63c830875b00248b25"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a6973f23643e98e63c830875b00248b25">BamTools::Constants::SAM_RG_SEQTECHNOLOGY_HELICOS</a></div><div class="ttdeci">const std::string SAM_RG_SEQTECHNOLOGY_HELICOS</div><div class="ttdef"><b>Definition:</b> SamConstants.h:87</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a0d517424c42c32b0cac1ab06d42c3ee4"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a0d517424c42c32b0cac1ab06d42c3ee4">BamTools::Constants::SAM_RG_SAMPLE_TAG</a></div><div class="ttdeci">const std::string SAM_RG_SAMPLE_TAG</div><div class="ttdef"><b>Definition:</b> SamConstants.h:55</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a44454cde3e36ea93dfde57976a028090"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a44454cde3e36ea93dfde57976a028090">BamTools::Constants::SAM_RG_BEGIN_TOKEN</a></div><div class="ttdeci">const std::string SAM_RG_BEGIN_TOKEN</div><div class="ttdef"><b>Definition:</b> SamConstants.h:45</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_ac7fc329a6ec0fd91da34f85cfa64c954"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#ac7fc329a6ec0fd91da34f85cfa64c954">BamTools::Constants::SAM_PG_VERSION_TAG</a></div><div class="ttdeci">const std::string SAM_PG_VERSION_TAG</div><div class="ttdef"><b>Definition:</b> SamConstants.h:65</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a5420ec349bd3fa2ba1c32ab750fd6718"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a5420ec349bd3fa2ba1c32ab750fd6718">BamTools::Constants::SAM_RG_LIBRARY_TAG</a></div><div class="ttdeci">const std::string SAM_RG_LIBRARY_TAG</div><div class="ttdef"><b>Definition:</b> SamConstants.h:50</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a0883710c1fbb37c6963ebee0ccb101eb"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a0883710c1fbb37c6963ebee0ccb101eb">BamTools::Constants::SAM_HD_VERSION_TAG</a></div><div class="ttdeci">const std::string SAM_HD_VERSION_TAG</div><div class="ttdef"><b>Definition:</b> SamConstants.h:31</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_ad03ece1e8f540a42ee36e0eb833d12b3"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#ad03ece1e8f540a42ee36e0eb833d12b3">BamTools::Constants::SAM_TAB</a></div><div class="ttdeci">const char SAM_TAB</div><div class="ttdef"><b>Definition:</b> SamConstants.h:24</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a77caaa01b98ab47c02643388e5831f4f"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a77caaa01b98ab47c02643388e5831f4f">BamTools::Constants::SAM_RG_DESCRIPTION_TAG</a></div><div class="ttdeci">const std::string SAM_RG_DESCRIPTION_TAG</div><div class="ttdef"><b>Definition:</b> SamConstants.h:46</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a996b57e1830ec53e3df7a7e1f1e80ae2"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a996b57e1830ec53e3df7a7e1f1e80ae2">BamTools::Constants::SAM_DIGITS</a></div><div class="ttdeci">const std::string SAM_DIGITS</div><div class="ttdef"><b>Definition:</b> SamConstants.h:25</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_afa271493666987fe6adcc1622ab53f21"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#afa271493666987fe6adcc1622ab53f21">BamTools::Constants::SAM_SQ_ASSEMBLYID_TAG</a></div><div class="ttdeci">const std::string SAM_SQ_ASSEMBLYID_TAG</div><div class="ttdef"><b>Definition:</b> SamConstants.h:37</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a2a0a356ccd7f3b6f74770486a0445faf"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a2a0a356ccd7f3b6f74770486a0445faf">BamTools::Constants::SAM_HD_SORTORDER_UNSORTED</a></div><div class="ttdeci">const std::string SAM_HD_SORTORDER_UNSORTED</div><div class="ttdef"><b>Definition:</b> SamConstants.h:74</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a9a3f6e2e146280a3491d67b60a4660f2"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a9a3f6e2e146280a3491d67b60a4660f2">BamTools::Constants::SAM_RG_SEQTECHNOLOGY_CAPILLARY</a></div><div class="ttdeci">const std::string SAM_RG_SEQTECHNOLOGY_CAPILLARY</div><div class="ttdef"><b>Definition:</b> SamConstants.h:86</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a4f7f64cbf1b9867dd1c17065d4bf9164"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a4f7f64cbf1b9867dd1c17065d4bf9164">BamTools::Constants::SAM_SQ_NAME_TAG</a></div><div class="ttdeci">const std::string SAM_SQ_NAME_TAG</div><div class="ttdef"><b>Definition:</b> SamConstants.h:40</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a1137bdeb0d037ed4d6cde982a53d86ec"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a1137bdeb0d037ed4d6cde982a53d86ec">BamTools::Constants::SAM_SQ_BEGIN_TOKEN</a></div><div class="ttdeci">const std::string SAM_SQ_BEGIN_TOKEN</div><div class="ttdef"><b>Definition:</b> SamConstants.h:36</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a50cd815bb5dbb11ee5c8d8abdd83ec39"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a50cd815bb5dbb11ee5c8d8abdd83ec39">BamTools::Constants::SAM_PG_ID_TAG</a></div><div class="ttdeci">const std::string SAM_PG_ID_TAG</div><div class="ttdef"><b>Definition:</b> SamConstants.h:62</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a4201e2b0e8de121b95826e6e82cb93e7"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a4201e2b0e8de121b95826e6e82cb93e7">BamTools::Constants::SAM_RG_PRODUCTIONDATE_TAG</a></div><div class="ttdeci">const std::string SAM_RG_PRODUCTIONDATE_TAG</div><div class="ttdef"><b>Definition:</b> SamConstants.h:53</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a095be7b2fdb244feccdd82528d292859"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a095be7b2fdb244feccdd82528d292859">BamTools::Constants::SAM_CURRENT_VERSION</a></div><div class="ttdeci">const std::string SAM_CURRENT_VERSION</div><div class="ttdef"><b>Definition:</b> SamConstants.h:27</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a09820f6d6eb58028bc29ef855604d634"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a09820f6d6eb58028bc29ef855604d634">BamTools::Constants::SAM_HD_SORTORDER_QUERYNAME</a></div><div class="ttdeci">const std::string SAM_HD_SORTORDER_QUERYNAME</div><div class="ttdef"><b>Definition:</b> SamConstants.h:72</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_af1760b7edfc1298b8933e46d7a6e85ba"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#af1760b7edfc1298b8933e46d7a6e85ba">BamTools::Constants::SAM_EQUAL</a></div><div class="ttdeci">const char SAM_EQUAL</div><div class="ttdef"><b>Definition:</b> SamConstants.h:21</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a04941ea1a9a44bf6b99cbf9f182d1e67"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a04941ea1a9a44bf6b99cbf9f182d1e67">BamTools::Constants::SAM_PERIOD</a></div><div class="ttdeci">const char SAM_PERIOD</div><div class="ttdef"><b>Definition:</b> SamConstants.h:22</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a420e24c36fef988522dfe4f444845f8d"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a420e24c36fef988522dfe4f444845f8d">BamTools::Constants::SAM_RG_SEQTECHNOLOGY_ILLUMINA</a></div><div class="ttdeci">const std::string SAM_RG_SEQTECHNOLOGY_ILLUMINA</div><div class="ttdef"><b>Definition:</b> SamConstants.h:88</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a6474731ad6aafec1930e54dd3e6922a8"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a6474731ad6aafec1930e54dd3e6922a8">BamTools::Constants::SAM_HD_SORTORDER_COORDINATE</a></div><div class="ttdeci">const std::string SAM_HD_SORTORDER_COORDINATE</div><div class="ttdef"><b>Definition:</b> SamConstants.h:71</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a4dc947cf37ccd2db26a2e6f495d0b7b3"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a4dc947cf37ccd2db26a2e6f495d0b7b3">BamTools::Constants::SAM_COLON</a></div><div class="ttdeci">const char SAM_COLON</div><div class="ttdef"><b>Definition:</b> SamConstants.h:20</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_aea7734f1ca755214acd4c757df25f6d4"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#aea7734f1ca755214acd4c757df25f6d4">BamTools::Constants::SAM_RG_ID_TAG</a></div><div class="ttdeci">const std::string SAM_RG_ID_TAG</div><div class="ttdef"><b>Definition:</b> SamConstants.h:48</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a80b33283c1c7c233227b4131e78ebd33"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a80b33283c1c7c233227b4131e78ebd33">BamTools::Constants::SAM_RG_PREDICTEDINSERTSIZE_TAG</a></div><div class="ttdeci">const std::string SAM_RG_PREDICTEDINSERTSIZE_TAG</div><div class="ttdef"><b>Definition:</b> SamConstants.h:52</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a94c416f9cc9c0fde5f4ceb8ce454bee1"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a94c416f9cc9c0fde5f4ceb8ce454bee1">BamTools::Constants::SAM_RG_SEQTECHNOLOGY_TAG</a></div><div class="ttdeci">const std::string SAM_RG_SEQTECHNOLOGY_TAG</div><div class="ttdef"><b>Definition:</b> SamConstants.h:57</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a0f0b211aeda8c3464f48352bf4e3b82f"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a0f0b211aeda8c3464f48352bf4e3b82f">BamTools::Constants::SAM_HD_SORTORDER_TAG</a></div><div class="ttdeci">const std::string SAM_HD_SORTORDER_TAG</div><div class="ttdef"><b>Definition:</b> SamConstants.h:32</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a6e605af26908592f00b06588bd47ea5d"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a6e605af26908592f00b06588bd47ea5d">BamTools::Constants::SAM_PG_NAME_TAG</a></div><div class="ttdeci">const std::string SAM_PG_NAME_TAG</div><div class="ttdef"><b>Definition:</b> SamConstants.h:63</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_afe3a74734ff2ea5f8e5a47e4cd92acf7"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#afe3a74734ff2ea5f8e5a47e4cd92acf7">BamTools::Constants::SAM_RG_PROGRAM_TAG</a></div><div class="ttdeci">const std::string SAM_RG_PROGRAM_TAG</div><div class="ttdef"><b>Definition:</b> SamConstants.h:54</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a0ed9a275357e92bbb4dcc03df3f84ccc"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a0ed9a275357e92bbb4dcc03df3f84ccc">BamTools::Constants::SAM_PG_BEGIN_TOKEN</a></div><div class="ttdeci">const std::string SAM_PG_BEGIN_TOKEN</div><div class="ttdef"><b>Definition:</b> SamConstants.h:60</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a397b6fe77af0e5b1bf1ecd74267b65d8"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a397b6fe77af0e5b1bf1ecd74267b65d8">BamTools::Constants::SAM_HD_GROUPORDER_NONE</a></div><div class="ttdeci">const std::string SAM_HD_GROUPORDER_NONE</div><div class="ttdef"><b>Definition:</b> SamConstants.h:77</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a9fa23d8339b7180dc4d950cab40c5a4a"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a9fa23d8339b7180dc4d950cab40c5a4a">BamTools::Constants::SAM_CO_BEGIN_TOKEN</a></div><div class="ttdeci">const std::string SAM_CO_BEGIN_TOKEN</div><div class="ttdef"><b>Definition:</b> SamConstants.h:68</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a95e5e09f71b636ea4a65a5897b34afa0"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a95e5e09f71b636ea4a65a5897b34afa0">BamTools::Constants::SAM_RG_PLATFORMUNIT_TAG</a></div><div class="ttdeci">const std::string SAM_RG_PLATFORMUNIT_TAG</div><div class="ttdef"><b>Definition:</b> SamConstants.h:51</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a33200e721ce47ea5b3c3f868398556fe"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a33200e721ce47ea5b3c3f868398556fe">BamTools::Constants::SAM_SQ_LENGTH_TAG</a></div><div class="ttdeci">const std::string SAM_SQ_LENGTH_TAG</div><div class="ttdef"><b>Definition:</b> SamConstants.h:39</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_ae61b05f20c74192ed3e962d6a629fd2e"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#ae61b05f20c74192ed3e962d6a629fd2e">BamTools::Constants::SAM_STAR</a></div><div class="ttdeci">const char SAM_STAR</div><div class="ttdef"><b>Definition:</b> SamConstants.h:23</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a51e7e505a0b484e512783270e889c43f"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a51e7e505a0b484e512783270e889c43f">BamTools::Constants::SAM_HD_SORTORDER_UNKNOWN</a></div><div class="ttdeci">const std::string SAM_HD_SORTORDER_UNKNOWN</div><div class="ttdef"><b>Definition:</b> SamConstants.h:73</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_ad06d1bfea017d27dc4c5bb881053c125"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#ad06d1bfea017d27dc4c5bb881053c125">BamTools::Constants::SAM_SQ_CHECKSUM_TAG</a></div><div class="ttdeci">const std::string SAM_SQ_CHECKSUM_TAG</div><div class="ttdef"><b>Definition:</b> SamConstants.h:38</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_aa5e30b73707ee51e927d4f6a1d53f536"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#aa5e30b73707ee51e927d4f6a1d53f536">BamTools::Constants::SAM_RG_SEQCENTER_TAG</a></div><div class="ttdeci">const std::string SAM_RG_SEQCENTER_TAG</div><div class="ttdef"><b>Definition:</b> SamConstants.h:56</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a5bf78a6e49cc46255bded799ea0c1f3a"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a5bf78a6e49cc46255bded799ea0c1f3a">BamTools::Constants::SAM_HD_GROUPORDER_REFERENCE</a></div><div class="ttdeci">const std::string SAM_HD_GROUPORDER_REFERENCE</div><div class="ttdef"><b>Definition:</b> SamConstants.h:79</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a13b1d3b04b9db66bab3976aac383f52d"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a13b1d3b04b9db66bab3976aac383f52d">BamTools::Constants::SAM_PG_PREVIOUSPROGRAM_TAG</a></div><div class="ttdeci">const std::string SAM_PG_PREVIOUSPROGRAM_TAG</div><div class="ttdef"><b>Definition:</b> SamConstants.h:64</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_aab2777c1038ee71bf8d88e016fabd033"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#aab2777c1038ee71bf8d88e016fabd033">BamTools::Constants::SAM_SQ_URI_TAG</a></div><div class="ttdeci">const std::string SAM_SQ_URI_TAG</div><div class="ttdef"><b>Definition:</b> SamConstants.h:42</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_aeb9b3527c516157653a1aa021e7a4cb1"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#aeb9b3527c516157653a1aa021e7a4cb1">BamTools::Constants::SAM_SQ_SPECIES_TAG</a></div><div class="ttdeci">const std::string SAM_SQ_SPECIES_TAG</div><div class="ttdef"><b>Definition:</b> SamConstants.h:41</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_aa27d63d2957b18174007b7600a541af4"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#aa27d63d2957b18174007b7600a541af4">BamTools::Constants::SAM_RG_SEQTECHNOLOGY_IONTORRENT</a></div><div class="ttdeci">const std::string SAM_RG_SEQTECHNOLOGY_IONTORRENT</div><div class="ttdef"><b>Definition:</b> SamConstants.h:89</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_aae01cde6c677be076673143a1ca3343e"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#aae01cde6c677be076673143a1ca3343e">BamTools::Constants::SAM_RG_SEQTECHNOLOGY_LS454</a></div><div class="ttdeci">const std::string SAM_RG_SEQTECHNOLOGY_LS454</div><div class="ttdef"><b>Definition:</b> SamConstants.h:90</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a6d3d5247b25a5464b1faec04624ed604"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a6d3d5247b25a5464b1faec04624ed604">BamTools::Constants::SAM_SQ_LENGTH_MAX</a></div><div class="ttdeci">const unsigned int SAM_SQ_LENGTH_MAX</div><div class="ttdef"><b>Definition:</b> SamConstants.h:83</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a50d3a40383afffd6a37a878388b36c29"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a50d3a40383afffd6a37a878388b36c29">BamTools::Constants::SAM_RG_KEYSEQUENCE_TAG</a></div><div class="ttdeci">const std::string SAM_RG_KEYSEQUENCE_TAG</div><div class="ttdef"><b>Definition:</b> SamConstants.h:49</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_ac818a5c5c7910329242c5f3c326a53d3"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#ac818a5c5c7910329242c5f3c326a53d3">BamTools::Constants::SAM_PG_COMMANDLINE_TAG</a></div><div class="ttdeci">const std::string SAM_PG_COMMANDLINE_TAG</div><div class="ttdef"><b>Definition:</b> SamConstants.h:61</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a9e0b09f1e709a961a5a8619e7e2f4264"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a9e0b09f1e709a961a5a8619e7e2f4264">BamTools::Constants::SAM_HD_GROUPORDER_QUERY</a></div><div class="ttdeci">const std::string SAM_HD_GROUPORDER_QUERY</div><div class="ttdef"><b>Definition:</b> SamConstants.h:78</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_aa4a7724701b8368f98fdb92dd799e102"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#aa4a7724701b8368f98fdb92dd799e102">BamTools::Constants::SAM_RG_SEQTECHNOLOGY_PACBIO</a></div><div class="ttdeci">const std::string SAM_RG_SEQTECHNOLOGY_PACBIO</div><div class="ttdef"><b>Definition:</b> SamConstants.h:91</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_aee6159dc6e3f7209fa732f5bc9294544"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#aee6159dc6e3f7209fa732f5bc9294544">BamTools::Constants::SAM_HD_BEGIN_TOKEN</a></div><div class="ttdeci">const std::string SAM_HD_BEGIN_TOKEN</div><div class="ttdef"><b>Definition:</b> SamConstants.h:30</div></div>
<div class="ttc" id="namespace_bam_tools_html"><div class="ttname"><a href="namespace_bam_tools.html">BamTools</a></div><div class="ttdoc">Contains all BamTools classes & methods. </div><div class="ttdef"><b>Definition:</b> Sort.h:24</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_adc82798d04d6b2f45d03fece39d350a0"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#adc82798d04d6b2f45d03fece39d350a0">BamTools::Constants::SAM_RG_SEQTECHNOLOGY_SOLID</a></div><div class="ttdeci">const std::string SAM_RG_SEQTECHNOLOGY_SOLID</div><div class="ttdef"><b>Definition:</b> SamConstants.h:92</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_abd030018d924800a554e2d179b62d694"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#abd030018d924800a554e2d179b62d694">BamTools::Constants::SAM_RG_FLOWORDER_TAG</a></div><div class="ttdeci">const std::string SAM_RG_FLOWORDER_TAG</div><div class="ttdef"><b>Definition:</b> SamConstants.h:47</div></div>
<div class="ttc" id="api__global_8h_html"><div class="ttname"><a href="api__global_8h.html">api_global.h</a></div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_af3042c03a4b7fefcb14d1f819c81afe8"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#af3042c03a4b7fefcb14d1f819c81afe8">BamTools::Constants::SAM_HD_GROUPORDER_TAG</a></div><div class="ttdeci">const std::string SAM_HD_GROUPORDER_TAG</div><div class="ttdef"><b>Definition:</b> SamConstants.h:33</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_add952cff9084af884308a80c372288d8"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#add952cff9084af884308a80c372288d8">BamTools::Constants::SAM_SQ_LENGTH_MIN</a></div><div class="ttdeci">const unsigned int SAM_SQ_LENGTH_MIN</div><div class="ttdef"><b>Definition:</b> SamConstants.h:82</div></div>
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