/usr/share/doc/libbamtools-dev/html/_sam_read_group_8h_source.html is in libbamtools-doc 2.4.1+dfsg-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 | <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
<meta http-equiv="X-UA-Compatible" content="IE=9"/>
<meta name="generator" content="Doxygen 1.8.13"/>
<meta name="viewport" content="width=device-width, initial-scale=1"/>
<title>BamTools: SamReadGroup.h Source File</title>
<link href="tabs.css" rel="stylesheet" type="text/css"/>
<script type="text/javascript" src="jquery.js"></script>
<script type="text/javascript" src="dynsections.js"></script>
<link href="search/search.css" rel="stylesheet" type="text/css"/>
<script type="text/javascript" src="search/searchdata.js"></script>
<script type="text/javascript" src="search/search.js"></script>
<link href="doxygen.css" rel="stylesheet" type="text/css" />
</head>
<body>
<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
<div id="titlearea">
<table cellspacing="0" cellpadding="0">
<tbody>
<tr style="height: 56px;">
<td id="projectalign" style="padding-left: 0.5em;">
<div id="projectname">BamTools
 <span id="projectnumber">2.4.1</span>
</div>
</td>
</tr>
</tbody>
</table>
</div>
<!-- end header part -->
<!-- Generated by Doxygen 1.8.13 -->
<script type="text/javascript">
var searchBox = new SearchBox("searchBox", "search",false,'Search');
</script>
<script type="text/javascript" src="menudata.js"></script>
<script type="text/javascript" src="menu.js"></script>
<script type="text/javascript">
$(function() {
initMenu('',true,false,'search.php','Search');
$(document).ready(function() { init_search(); });
});
</script>
<div id="main-nav"></div>
<!-- window showing the filter options -->
<div id="MSearchSelectWindow"
onmouseover="return searchBox.OnSearchSelectShow()"
onmouseout="return searchBox.OnSearchSelectHide()"
onkeydown="return searchBox.OnSearchSelectKey(event)">
</div>
<!-- iframe showing the search results (closed by default) -->
<div id="MSearchResultsWindow">
<iframe src="javascript:void(0)" frameborder="0"
name="MSearchResults" id="MSearchResults">
</iframe>
</div>
<div id="nav-path" class="navpath">
<ul>
<li class="navelem"><a class="el" href="dir_68267d1309a1af8e8297ef4c3efbcdba.html">src</a></li><li class="navelem"><a class="el" href="dir_da61e3e9a357748887e3ca8d7c5a0c16.html">api</a></li> </ul>
</div>
</div><!-- top -->
<div class="header">
<div class="headertitle">
<div class="title">SamReadGroup.h</div> </div>
</div><!--header-->
<div class="contents">
<a href="_sam_read_group_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> <span class="comment">// ***************************************************************************</span></div><div class="line"><a name="l00002"></a><span class="lineno"> 2</span> <span class="comment">// SamReadGroup.h (c) 2010 Derek Barnett</span></div><div class="line"><a name="l00003"></a><span class="lineno"> 3</span> <span class="comment">// Marth Lab, Department of Biology, Boston College</span></div><div class="line"><a name="l00004"></a><span class="lineno"> 4</span> <span class="comment">// ---------------------------------------------------------------------------</span></div><div class="line"><a name="l00005"></a><span class="lineno"> 5</span> <span class="comment">// Last modified: 10 October 2011 (DB)</span></div><div class="line"><a name="l00006"></a><span class="lineno"> 6</span> <span class="comment">// ---------------------------------------------------------------------------</span></div><div class="line"><a name="l00007"></a><span class="lineno"> 7</span> <span class="comment">// Provides direct read/write access to the SAM read group data fields.</span></div><div class="line"><a name="l00008"></a><span class="lineno"> 8</span> <span class="comment">// ***************************************************************************</span></div><div class="line"><a name="l00009"></a><span class="lineno"> 9</span> </div><div class="line"><a name="l00010"></a><span class="lineno"> 10</span> <span class="preprocessor">#ifndef SAM_READGROUP_H</span></div><div class="line"><a name="l00011"></a><span class="lineno"> 11</span> <span class="preprocessor">#define SAM_READGROUP_H</span></div><div class="line"><a name="l00012"></a><span class="lineno"> 12</span> </div><div class="line"><a name="l00013"></a><span class="lineno"> 13</span> <span class="preprocessor">#include "<a class="code" href="api__global_8h.html">api/api_global.h</a>"</span></div><div class="line"><a name="l00014"></a><span class="lineno"> 14</span> <span class="preprocessor">#include "<a class="code" href="_bam_aux_8h.html">api/BamAux.h</a>"</span></div><div class="line"><a name="l00015"></a><span class="lineno"> 15</span> <span class="preprocessor">#include <string></span></div><div class="line"><a name="l00016"></a><span class="lineno"> 16</span> <span class="preprocessor">#include <vector></span></div><div class="line"><a name="l00017"></a><span class="lineno"> 17</span> </div><div class="line"><a name="l00018"></a><span class="lineno"> 18</span> <span class="keyword">namespace </span><a class="code" href="namespace_bam_tools.html">BamTools</a> {</div><div class="line"><a name="l00019"></a><span class="lineno"> 19</span> </div><div class="line"><a name="l00020"></a><span class="lineno"><a class="line" href="struct_bam_tools_1_1_sam_read_group.html"> 20</a></span> <span class="keyword">struct </span><a class="code" href="api__global_8h.html#a5e3652cae8b48c1ad174f0b06bbd06d0">API_EXPORT</a> <a class="code" href="struct_bam_tools_1_1_sam_read_group.html">SamReadGroup</a> {</div><div class="line"><a name="l00021"></a><span class="lineno"> 21</span> </div><div class="line"><a name="l00022"></a><span class="lineno"> 22</span>  <span class="comment">// ctor & dtor</span></div><div class="line"><a name="l00023"></a><span class="lineno"> 23</span>  <a class="code" href="struct_bam_tools_1_1_sam_read_group.html">SamReadGroup</a>(<span class="keywordtype">void</span>);</div><div class="line"><a name="l00024"></a><span class="lineno"> 24</span>  SamReadGroup(<span class="keyword">const</span> std::string& <span class="keywordtype">id</span>);</div><div class="line"><a name="l00025"></a><span class="lineno"> 25</span>  SamReadGroup(<span class="keyword">const</span> SamReadGroup& other);</div><div class="line"><a name="l00026"></a><span class="lineno"> 26</span>  ~SamReadGroup(<span class="keywordtype">void</span>);</div><div class="line"><a name="l00027"></a><span class="lineno"> 27</span> </div><div class="line"><a name="l00028"></a><span class="lineno"> 28</span>  <span class="comment">// query/modify entire read group</span></div><div class="line"><a name="l00029"></a><span class="lineno"> 29</span>  <span class="keywordtype">void</span> Clear(<span class="keywordtype">void</span>); <span class="comment">// clears all data fields</span></div><div class="line"><a name="l00030"></a><span class="lineno"> 30</span> </div><div class="line"><a name="l00031"></a><span class="lineno"> 31</span>  <span class="comment">// convenience query methods</span></div><div class="line"><a name="l00032"></a><span class="lineno"> 32</span>  <span class="keywordtype">bool</span> HasDescription(<span class="keywordtype">void</span>) <span class="keyword">const</span>; <span class="comment">// returns true if read group has a description</span></div><div class="line"><a name="l00033"></a><span class="lineno"> 33</span>  <span class="keywordtype">bool</span> HasFlowOrder(<span class="keywordtype">void</span>) <span class="keyword">const</span>; <span class="comment">// returns true if read group has a flow order entry</span></div><div class="line"><a name="l00034"></a><span class="lineno"> 34</span>  <span class="keywordtype">bool</span> HasID(<span class="keywordtype">void</span>) <span class="keyword">const</span>; <span class="comment">// returns true if read group has a group ID</span></div><div class="line"><a name="l00035"></a><span class="lineno"> 35</span>  <span class="keywordtype">bool</span> HasKeySequence(<span class="keywordtype">void</span>) <span class="keyword">const</span>; <span class="comment">// returns true if read group has a key sequence</span></div><div class="line"><a name="l00036"></a><span class="lineno"> 36</span>  <span class="keywordtype">bool</span> HasLibrary(<span class="keywordtype">void</span>) <span class="keyword">const</span>; <span class="comment">// returns true if read group has a library name</span></div><div class="line"><a name="l00037"></a><span class="lineno"> 37</span>  <span class="keywordtype">bool</span> HasPlatformUnit(<span class="keywordtype">void</span>) <span class="keyword">const</span>; <span class="comment">// returns true if read group has a platform unit ID</span></div><div class="line"><a name="l00038"></a><span class="lineno"> 38</span>  <span class="keywordtype">bool</span> HasPredictedInsertSize(<span class="keywordtype">void</span>) <span class="keyword">const</span>; <span class="comment">// returns true if read group has a predicted insert size</span></div><div class="line"><a name="l00039"></a><span class="lineno"> 39</span>  <span class="keywordtype">bool</span> HasProductionDate(<span class="keywordtype">void</span>) <span class="keyword">const</span>; <span class="comment">// returns true if read group has a production date</span></div><div class="line"><a name="l00040"></a><span class="lineno"> 40</span>  <span class="keywordtype">bool</span> HasProgram(<span class="keywordtype">void</span>) <span class="keyword">const</span>; <span class="comment">// returns true if read group has a program entry</span></div><div class="line"><a name="l00041"></a><span class="lineno"> 41</span>  <span class="keywordtype">bool</span> HasSample(<span class="keywordtype">void</span>) <span class="keyword">const</span>; <span class="comment">// returns true if read group has a sample name</span></div><div class="line"><a name="l00042"></a><span class="lineno"> 42</span>  <span class="keywordtype">bool</span> HasSequencingCenter(<span class="keywordtype">void</span>) <span class="keyword">const</span>; <span class="comment">// returns true if read group has a sequencing center ID</span></div><div class="line"><a name="l00043"></a><span class="lineno"> 43</span>  <span class="keywordtype">bool</span> HasSequencingTechnology(<span class="keywordtype">void</span>) <span class="keyword">const</span>; <span class="comment">// returns true if read group has a sequencing technology ID</span></div><div class="line"><a name="l00044"></a><span class="lineno"> 44</span> </div><div class="line"><a name="l00045"></a><span class="lineno"> 45</span> </div><div class="line"><a name="l00046"></a><span class="lineno"> 46</span>  <span class="comment">// data fields</span></div><div class="line"><a name="l00047"></a><span class="lineno"><a class="line" href="struct_bam_tools_1_1_sam_read_group.html#a2dacc156b52b83496b9cdd9e55adb06e"> 47</a></span>  std::string <a class="code" href="struct_bam_tools_1_1_sam_read_group.html#a2dacc156b52b83496b9cdd9e55adb06e">Description</a>; <span class="comment">// DS:<Description></span></div><div class="line"><a name="l00048"></a><span class="lineno"><a class="line" href="struct_bam_tools_1_1_sam_read_group.html#a51e27ae1aa984c83393024d12e54a2ea"> 48</a></span>  std::string <a class="code" href="struct_bam_tools_1_1_sam_read_group.html#a51e27ae1aa984c83393024d12e54a2ea">FlowOrder</a>; <span class="comment">// FO:<FlowOrder></span></div><div class="line"><a name="l00049"></a><span class="lineno"><a class="line" href="struct_bam_tools_1_1_sam_read_group.html#a8e646f2dae01515c65b9f481bdf41576"> 49</a></span>  std::string <a class="code" href="struct_bam_tools_1_1_sam_read_group.html#a8e646f2dae01515c65b9f481bdf41576">ID</a>; <span class="comment">// ID:<ID> *Required for valid SAM header*</span></div><div class="line"><a name="l00050"></a><span class="lineno"><a class="line" href="struct_bam_tools_1_1_sam_read_group.html#ad5ae3343b14a03a779c88079a08bc11f"> 50</a></span>  std::string <a class="code" href="struct_bam_tools_1_1_sam_read_group.html#ad5ae3343b14a03a779c88079a08bc11f">KeySequence</a>; <span class="comment">// KS:<KeySequence></span></div><div class="line"><a name="l00051"></a><span class="lineno"><a class="line" href="struct_bam_tools_1_1_sam_read_group.html#aa3b71eaac1e3810c89534b6d281a27d3"> 51</a></span>  std::string <a class="code" href="struct_bam_tools_1_1_sam_read_group.html#aa3b71eaac1e3810c89534b6d281a27d3">Library</a>; <span class="comment">// LB:<Library></span></div><div class="line"><a name="l00052"></a><span class="lineno"><a class="line" href="struct_bam_tools_1_1_sam_read_group.html#a03c247af5e2dccb3c6ef121fe7e31fd4"> 52</a></span>  std::string <a class="code" href="struct_bam_tools_1_1_sam_read_group.html#a03c247af5e2dccb3c6ef121fe7e31fd4">PlatformUnit</a>; <span class="comment">// PU:<PlatformUnit></span></div><div class="line"><a name="l00053"></a><span class="lineno"><a class="line" href="struct_bam_tools_1_1_sam_read_group.html#a25c5521c2398d29d07bebefce64cfc13"> 53</a></span>  std::string <a class="code" href="struct_bam_tools_1_1_sam_read_group.html#a25c5521c2398d29d07bebefce64cfc13">PredictedInsertSize</a>; <span class="comment">// PI:<PredictedInsertSize></span></div><div class="line"><a name="l00054"></a><span class="lineno"><a class="line" href="struct_bam_tools_1_1_sam_read_group.html#a41ef6e3f744ba7a0bab0e8bab421a524"> 54</a></span>  std::string <a class="code" href="struct_bam_tools_1_1_sam_read_group.html#a41ef6e3f744ba7a0bab0e8bab421a524">ProductionDate</a>; <span class="comment">// DT:<ProductionDate></span></div><div class="line"><a name="l00055"></a><span class="lineno"><a class="line" href="struct_bam_tools_1_1_sam_read_group.html#a3f4f9215ff456dc8a82040bbdd5385e8"> 55</a></span>  std::string <a class="code" href="struct_bam_tools_1_1_sam_read_group.html#a3f4f9215ff456dc8a82040bbdd5385e8">Program</a>; <span class="comment">// PG:<Program></span></div><div class="line"><a name="l00056"></a><span class="lineno"><a class="line" href="struct_bam_tools_1_1_sam_read_group.html#a3ddee777e0bc9f2e60d949349c7af338"> 56</a></span>  std::string <a class="code" href="struct_bam_tools_1_1_sam_read_group.html#a3ddee777e0bc9f2e60d949349c7af338">Sample</a>; <span class="comment">// SM:<Sample></span></div><div class="line"><a name="l00057"></a><span class="lineno"><a class="line" href="struct_bam_tools_1_1_sam_read_group.html#a64d5eaf35139d5777e4beb3434d33c24"> 57</a></span>  std::string <a class="code" href="struct_bam_tools_1_1_sam_read_group.html#a64d5eaf35139d5777e4beb3434d33c24">SequencingCenter</a>; <span class="comment">// CN:<SequencingCenter></span></div><div class="line"><a name="l00058"></a><span class="lineno"><a class="line" href="struct_bam_tools_1_1_sam_read_group.html#a08400e203fa09a4bce290c85942f06de"> 58</a></span>  std::string <a class="code" href="struct_bam_tools_1_1_sam_read_group.html#a08400e203fa09a4bce290c85942f06de">SequencingTechnology</a>; <span class="comment">// PL:<SequencingTechnology></span></div><div class="line"><a name="l00059"></a><span class="lineno"><a class="line" href="struct_bam_tools_1_1_sam_read_group.html#a149c2f017ac232b4e24c1da33eb4e70b"> 59</a></span>  std::vector<CustomHeaderTag> <a class="code" href="struct_bam_tools_1_1_sam_read_group.html#a149c2f017ac232b4e24c1da33eb4e70b">CustomTags</a>; <span class="comment">// optional custom tags</span></div><div class="line"><a name="l00060"></a><span class="lineno"> 60</span> };</div><div class="line"><a name="l00061"></a><span class="lineno"> 61</span> </div><div class="line"><a name="l00065"></a><span class="lineno"><a class="line" href="namespace_bam_tools.html#a42811321651bf17b4b3bbcd6913b6c08"> 65</a></span> <a class="code" href="api__global_8h.html#a5e3652cae8b48c1ad174f0b06bbd06d0">API_EXPORT</a> <span class="keyword">inline</span> <span class="keywordtype">bool</span> <a class="code" href="namespace_bam_tools.html#ada5374e28a46d3d386a7d3e22af41574">operator==</a>(<span class="keyword">const</span> <a class="code" href="struct_bam_tools_1_1_sam_read_group.html">SamReadGroup</a>& lhs, <span class="keyword">const</span> <a class="code" href="struct_bam_tools_1_1_sam_read_group.html">SamReadGroup</a>& rhs) {</div><div class="line"><a name="l00066"></a><span class="lineno"> 66</span>  <span class="keywordflow">return</span> lhs.<a class="code" href="struct_bam_tools_1_1_sam_read_group.html#a8e646f2dae01515c65b9f481bdf41576">ID</a> == rhs.<a class="code" href="struct_bam_tools_1_1_sam_read_group.html#a8e646f2dae01515c65b9f481bdf41576">ID</a>;</div><div class="line"><a name="l00067"></a><span class="lineno"> 67</span> }</div><div class="line"><a name="l00068"></a><span class="lineno"> 68</span> </div><div class="line"><a name="l00069"></a><span class="lineno"> 69</span> } <span class="comment">// namespace BamTools</span></div><div class="line"><a name="l00070"></a><span class="lineno"> 70</span> </div><div class="line"><a name="l00071"></a><span class="lineno"> 71</span> <span class="preprocessor">#endif // SAM_READGROUP_H</span></div><div class="ttc" id="struct_bam_tools_1_1_sam_read_group_html_a3f4f9215ff456dc8a82040bbdd5385e8"><div class="ttname"><a href="struct_bam_tools_1_1_sam_read_group.html#a3f4f9215ff456dc8a82040bbdd5385e8">BamTools::SamReadGroup::Program</a></div><div class="ttdeci">std::string Program</div><div class="ttdoc">corresponds to @RG PG:<Program> </div><div class="ttdef"><b>Definition:</b> SamReadGroup.h:55</div></div>
<div class="ttc" id="_bam_aux_8h_html"><div class="ttname"><a href="_bam_aux_8h.html">BamAux.h</a></div></div>
<div class="ttc" id="struct_bam_tools_1_1_sam_read_group_html_a51e27ae1aa984c83393024d12e54a2ea"><div class="ttname"><a href="struct_bam_tools_1_1_sam_read_group.html#a51e27ae1aa984c83393024d12e54a2ea">BamTools::SamReadGroup::FlowOrder</a></div><div class="ttdeci">std::string FlowOrder</div><div class="ttdoc">corresponds to @RG FO:<FlowOrder> </div><div class="ttdef"><b>Definition:</b> SamReadGroup.h:48</div></div>
<div class="ttc" id="namespace_bam_tools_html_ada5374e28a46d3d386a7d3e22af41574"><div class="ttname"><a href="namespace_bam_tools.html#ada5374e28a46d3d386a7d3e22af41574">BamTools::operator==</a></div><div class="ttdeci">API_EXPORT bool operator==(const SamProgram &lhs, const SamProgram &rhs)</div><div class="ttdoc">tests equality by comparing program IDs </div><div class="ttdef"><b>Definition:</b> SamProgram.h:57</div></div>
<div class="ttc" id="struct_bam_tools_1_1_sam_read_group_html_a64d5eaf35139d5777e4beb3434d33c24"><div class="ttname"><a href="struct_bam_tools_1_1_sam_read_group.html#a64d5eaf35139d5777e4beb3434d33c24">BamTools::SamReadGroup::SequencingCenter</a></div><div class="ttdeci">std::string SequencingCenter</div><div class="ttdoc">corresponds to @RG CN:<SequencingCenter> </div><div class="ttdef"><b>Definition:</b> SamReadGroup.h:57</div></div>
<div class="ttc" id="struct_bam_tools_1_1_sam_read_group_html_a8e646f2dae01515c65b9f481bdf41576"><div class="ttname"><a href="struct_bam_tools_1_1_sam_read_group.html#a8e646f2dae01515c65b9f481bdf41576">BamTools::SamReadGroup::ID</a></div><div class="ttdeci">std::string ID</div><div class="ttdoc">corresponds to @RG ID:<ID> </div><div class="ttdef"><b>Definition:</b> SamReadGroup.h:49</div></div>
<div class="ttc" id="struct_bam_tools_1_1_sam_read_group_html"><div class="ttname"><a href="struct_bam_tools_1_1_sam_read_group.html">BamTools::SamReadGroup</a></div><div class="ttdoc">Represents a SAM read group entry. </div><div class="ttdef"><b>Definition:</b> SamReadGroup.h:20</div></div>
<div class="ttc" id="struct_bam_tools_1_1_sam_read_group_html_a25c5521c2398d29d07bebefce64cfc13"><div class="ttname"><a href="struct_bam_tools_1_1_sam_read_group.html#a25c5521c2398d29d07bebefce64cfc13">BamTools::SamReadGroup::PredictedInsertSize</a></div><div class="ttdeci">std::string PredictedInsertSize</div><div class="ttdoc">corresponds to @RG PI:<PredictedInsertSize> </div><div class="ttdef"><b>Definition:</b> SamReadGroup.h:53</div></div>
<div class="ttc" id="api__global_8h_html_a5e3652cae8b48c1ad174f0b06bbd06d0"><div class="ttname"><a href="api__global_8h.html#a5e3652cae8b48c1ad174f0b06bbd06d0">API_EXPORT</a></div><div class="ttdeci">#define API_EXPORT</div><div class="ttdef"><b>Definition:</b> api_global.h:18</div></div>
<div class="ttc" id="struct_bam_tools_1_1_sam_read_group_html_a149c2f017ac232b4e24c1da33eb4e70b"><div class="ttname"><a href="struct_bam_tools_1_1_sam_read_group.html#a149c2f017ac232b4e24c1da33eb4e70b">BamTools::SamReadGroup::CustomTags</a></div><div class="ttdeci">std::vector< CustomHeaderTag > CustomTags</div><div class="ttdef"><b>Definition:</b> SamReadGroup.h:59</div></div>
<div class="ttc" id="struct_bam_tools_1_1_sam_read_group_html_a3ddee777e0bc9f2e60d949349c7af338"><div class="ttname"><a href="struct_bam_tools_1_1_sam_read_group.html#a3ddee777e0bc9f2e60d949349c7af338">BamTools::SamReadGroup::Sample</a></div><div class="ttdeci">std::string Sample</div><div class="ttdoc">corresponds to @RG SM:<Sample> </div><div class="ttdef"><b>Definition:</b> SamReadGroup.h:56</div></div>
<div class="ttc" id="struct_bam_tools_1_1_sam_read_group_html_a08400e203fa09a4bce290c85942f06de"><div class="ttname"><a href="struct_bam_tools_1_1_sam_read_group.html#a08400e203fa09a4bce290c85942f06de">BamTools::SamReadGroup::SequencingTechnology</a></div><div class="ttdeci">std::string SequencingTechnology</div><div class="ttdoc">corresponds to @RG PL:<SequencingTechnology> </div><div class="ttdef"><b>Definition:</b> SamReadGroup.h:58</div></div>
<div class="ttc" id="struct_bam_tools_1_1_sam_read_group_html_a2dacc156b52b83496b9cdd9e55adb06e"><div class="ttname"><a href="struct_bam_tools_1_1_sam_read_group.html#a2dacc156b52b83496b9cdd9e55adb06e">BamTools::SamReadGroup::Description</a></div><div class="ttdeci">std::string Description</div><div class="ttdoc">corresponds to @RG DS:<Description> </div><div class="ttdef"><b>Definition:</b> SamReadGroup.h:47</div></div>
<div class="ttc" id="struct_bam_tools_1_1_sam_read_group_html_aa3b71eaac1e3810c89534b6d281a27d3"><div class="ttname"><a href="struct_bam_tools_1_1_sam_read_group.html#aa3b71eaac1e3810c89534b6d281a27d3">BamTools::SamReadGroup::Library</a></div><div class="ttdeci">std::string Library</div><div class="ttdoc">corresponds to @RG LB:<Library> </div><div class="ttdef"><b>Definition:</b> SamReadGroup.h:51</div></div>
<div class="ttc" id="struct_bam_tools_1_1_sam_read_group_html_ad5ae3343b14a03a779c88079a08bc11f"><div class="ttname"><a href="struct_bam_tools_1_1_sam_read_group.html#ad5ae3343b14a03a779c88079a08bc11f">BamTools::SamReadGroup::KeySequence</a></div><div class="ttdeci">std::string KeySequence</div><div class="ttdoc">corresponds to @RG KS:<KeySequence> </div><div class="ttdef"><b>Definition:</b> SamReadGroup.h:50</div></div>
<div class="ttc" id="struct_bam_tools_1_1_sam_read_group_html_a41ef6e3f744ba7a0bab0e8bab421a524"><div class="ttname"><a href="struct_bam_tools_1_1_sam_read_group.html#a41ef6e3f744ba7a0bab0e8bab421a524">BamTools::SamReadGroup::ProductionDate</a></div><div class="ttdeci">std::string ProductionDate</div><div class="ttdoc">corresponds to @RG DT:<ProductionDate> </div><div class="ttdef"><b>Definition:</b> SamReadGroup.h:54</div></div>
<div class="ttc" id="namespace_bam_tools_html"><div class="ttname"><a href="namespace_bam_tools.html">BamTools</a></div><div class="ttdoc">Contains all BamTools classes & methods. </div><div class="ttdef"><b>Definition:</b> Sort.h:24</div></div>
<div class="ttc" id="struct_bam_tools_1_1_sam_read_group_html_a03c247af5e2dccb3c6ef121fe7e31fd4"><div class="ttname"><a href="struct_bam_tools_1_1_sam_read_group.html#a03c247af5e2dccb3c6ef121fe7e31fd4">BamTools::SamReadGroup::PlatformUnit</a></div><div class="ttdeci">std::string PlatformUnit</div><div class="ttdoc">corresponds to @RG PU:<PlatformUnit> </div><div class="ttdef"><b>Definition:</b> SamReadGroup.h:52</div></div>
<div class="ttc" id="api__global_8h_html"><div class="ttname"><a href="api__global_8h.html">api_global.h</a></div></div>
</div><!-- fragment --></div><!-- contents -->
<!-- start footer part -->
<hr class="footer"/><address class="footer"><small>
Generated by  <a href="http://www.doxygen.org/index.html">
<img class="footer" src="doxygen.png" alt="doxygen"/>
</a> 1.8.13
</small></address>
</body>
</html>
|