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  <ul>
<li class="navelem"><a class="el" href="namespace_bam_tools.html">BamTools</a></li><li class="navelem"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html">BamMultiReader</a></li>  </ul>
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<div class="title">BamTools::BamMultiReader Member List</div>  </div>
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<p>This is the complete list of members for <a class="el" href="class_bam_tools_1_1_bam_multi_reader.html">BamTools::BamMultiReader</a>, including all inherited members.</p>
<table class="directory">
  <tr class="even"><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html#a18a0708989782f9acb9c05a85b91c913">BamMultiReader</a>(void)</td><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html">BamTools::BamMultiReader</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html#ac05596504d1c230aa1a32493a1b10216">Close</a>(void)</td><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html">BamTools::BamMultiReader</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html#a782af28f88e8b91a580ea0f70f32a235">CloseFile</a>(const std::string &amp;filename)</td><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html">BamTools::BamMultiReader</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html#adfefc02fd813f5d26325a9eb9299de5a">CreateIndexes</a>(const BamIndex::IndexType &amp;type=BamIndex::STANDARD)</td><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html">BamTools::BamMultiReader</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html#a2624a904fb20f8c64b6a57176305df93">Filenames</a>(void) const</td><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html">BamTools::BamMultiReader</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html#a67d34b61a514b875661ac11f0cca7dc2">GetErrorString</a>(void) const</td><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html">BamTools::BamMultiReader</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html#ae17506fe2f4959fdbebf27f05d17c8cd">GetHeader</a>(void) const</td><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html">BamTools::BamMultiReader</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html#aa65c1ed621c41d3e07a99500cd5311ac">GetHeaderText</a>(void) const</td><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html">BamTools::BamMultiReader</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html#a63ecaca57a10920d110693cc0082da8a">GetMergeOrder</a>(void) const</td><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html">BamTools::BamMultiReader</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html#a8e78819e59b1a5c08c34d56972188a44">GetNextAlignment</a>(BamAlignment &amp;alignment)</td><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html">BamTools::BamMultiReader</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html#a7c1b307ac78087f8174b1dcac838f6a2">GetNextAlignmentCore</a>(BamAlignment &amp;alignment)</td><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html">BamTools::BamMultiReader</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html#aa02252ba82b3e39a4a9527f37688e0bb">GetReferenceCount</a>(void) const</td><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html">BamTools::BamMultiReader</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html#a5a3ea49b0ad5bc9ca4e599668bcca848">GetReferenceData</a>(void) const</td><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html">BamTools::BamMultiReader</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html#a0fd0cec7b87ed157e9d9314f62483ed5">GetReferenceID</a>(const std::string &amp;refName) const</td><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html">BamTools::BamMultiReader</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html#ad5683c81b8e122a867af4982df9bf93f">HasIndexes</a>(void) const</td><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html">BamTools::BamMultiReader</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html#abbeb7137ba90a1851d424fffd924d7e3">HasOpenReaders</a>(void) const</td><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html">BamTools::BamMultiReader</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html#adabb999cbc393ecf8d268a053d987fb1">Jump</a>(int refID, int position=0)</td><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html">BamTools::BamMultiReader</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html#a9c09a395dd8ecc33f2e6a147ee7fd001">LocateIndexes</a>(const BamIndex::IndexType &amp;preferredType=BamIndex::STANDARD)</td><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html">BamTools::BamMultiReader</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html#abf4e4909508f19cc4f733a48aa7d1ed2a2af00a6dfb052ee8a23319acfd33839b">MergeByCoordinate</a> enum value</td><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html">BamTools::BamMultiReader</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html#abf4e4909508f19cc4f733a48aa7d1ed2a98ab3051854a1357045117cd1a24e835">MergeByName</a> enum value</td><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html">BamTools::BamMultiReader</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html#abf4e4909508f19cc4f733a48aa7d1ed2">MergeOrder</a> enum name</td><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html">BamTools::BamMultiReader</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html#a35475e3480ef6886b440deb4e30e9964">Open</a>(const std::vector&lt; std::string &gt; &amp;filenames)</td><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html">BamTools::BamMultiReader</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html#a11ff4c569409990b0a6e3fcdaeaf629e">OpenFile</a>(const std::string &amp;filename)</td><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html">BamTools::BamMultiReader</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html#a527fabdd80d8dc7788abd60520048b13">OpenIndexes</a>(const std::vector&lt; std::string &gt; &amp;indexFilenames)</td><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html">BamTools::BamMultiReader</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html#a214b9b40f55923fd8bf2141a7f36d7f1">Rewind</a>(void)</td><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html">BamTools::BamMultiReader</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html#abf4e4909508f19cc4f733a48aa7d1ed2a84e28c1d03be927b219307f33248f89e">RoundRobinMerge</a> enum value</td><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html">BamTools::BamMultiReader</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html#ab5cd0aa4cea16a53954731387d0c4aaf">SetExplicitMergeOrder</a>(BamMultiReader::MergeOrder order)</td><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html">BamTools::BamMultiReader</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html#a7c9c3d1f9882053af4cbfebfb894b8c7">SetRegion</a>(const BamRegion &amp;region)</td><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html">BamTools::BamMultiReader</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html#abcca568dd142e9db91cca5dab8934da8">SetRegion</a>(const int &amp;leftRefID, const int &amp;leftPosition, const int &amp;rightRefID, const int &amp;rightPosition)</td><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html">BamTools::BamMultiReader</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html#aa655801419aeeca519109ebac5242722">~BamMultiReader</a>(void)</td><td class="entry"><a class="el" href="class_bam_tools_1_1_bam_multi_reader.html">BamTools::BamMultiReader</a></td><td class="entry"></td></tr>
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