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   &#160;<span id="projectnumber">2.4.1</span>
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&#160;

<h3><a id="index_c"></a>- c -</h3><ul>
<li>CigarOp()
: <a class="el" href="struct_bam_tools_1_1_cigar_op.html#a7ad38f6f438ca690e80e919ffa8a28ef">BamTools::CigarOp</a>
</li>
<li>clear()
: <a class="el" href="struct_bam_tools_1_1_bam_region.html#a7f94a21e6b0602dedd9aa30b76e44f72">BamTools::BamRegion</a>
</li>
<li>Clear()
: <a class="el" href="struct_bam_tools_1_1_sam_header.html#a3de60b6fd6db24bacaeadf42813b4758">BamTools::SamHeader</a>
, <a class="el" href="struct_bam_tools_1_1_sam_program.html#aa9434f358c44195164c19f6763d1f274">BamTools::SamProgram</a>
, <a class="el" href="class_bam_tools_1_1_sam_program_chain.html#acb13f9737ab843f1ced2e179ae6de568">BamTools::SamProgramChain</a>
, <a class="el" href="struct_bam_tools_1_1_sam_read_group.html#af92df896aabb8e372ad88ac85339a5ee">BamTools::SamReadGroup</a>
, <a class="el" href="class_bam_tools_1_1_sam_read_group_dictionary.html#afafb0bdd7bcd20050c103a5b80e009d4">BamTools::SamReadGroupDictionary</a>
, <a class="el" href="struct_bam_tools_1_1_sam_sequence.html#aca697aca0035a41323667d11fec0ca4a">BamTools::SamSequence</a>
, <a class="el" href="class_bam_tools_1_1_sam_sequence_dictionary.html#ab5f1c55fa25c85a6b112fef669644f15">BamTools::SamSequenceDictionary</a>
</li>
<li>Close()
: <a class="el" href="class_bam_tools_1_1_bam_multi_reader.html#ac05596504d1c230aa1a32493a1b10216">BamTools::BamMultiReader</a>
, <a class="el" href="class_bam_tools_1_1_bam_reader.html#a9bedadbb878c84d3674eea1c11f981ec">BamTools::BamReader</a>
, <a class="el" href="class_bam_tools_1_1_bam_writer.html#acf06b57f75e03de0096640adcdfe0ad5">BamTools::BamWriter</a>
, <a class="el" href="class_bam_tools_1_1_i_bam_i_o_device.html#a03df5619c43a34c7971cf5afd1c751d6">BamTools::IBamIODevice</a>
</li>
<li>CloseFile()
: <a class="el" href="class_bam_tools_1_1_bam_multi_reader.html#a782af28f88e8b91a580ea0f70f32a235">BamTools::BamMultiReader</a>
</li>
<li>ConstBegin()
: <a class="el" href="class_bam_tools_1_1_sam_program_chain.html#a838d77fe41e784c086dede6cc008b435">BamTools::SamProgramChain</a>
, <a class="el" href="class_bam_tools_1_1_sam_read_group_dictionary.html#aaf28504a271f1b63d0295463c2d5e658">BamTools::SamReadGroupDictionary</a>
, <a class="el" href="class_bam_tools_1_1_sam_sequence_dictionary.html#a46bf50d51b95aec15776a69356486baa">BamTools::SamSequenceDictionary</a>
</li>
<li>ConstEnd()
: <a class="el" href="class_bam_tools_1_1_sam_program_chain.html#a98885dc535d92f3f3b74b3cb3bccc773">BamTools::SamProgramChain</a>
, <a class="el" href="class_bam_tools_1_1_sam_read_group_dictionary.html#ac39dee9522fb6ecd6a8dbc6c1f5134cd">BamTools::SamReadGroupDictionary</a>
, <a class="el" href="class_bam_tools_1_1_sam_sequence_dictionary.html#ae806b3dad8fee543be4c15b97aaf6cf3">BamTools::SamSequenceDictionary</a>
</li>
<li>Contains()
: <a class="el" href="class_bam_tools_1_1_sam_program_chain.html#a5497595a2963d444c63b7367727c83ba">BamTools::SamProgramChain</a>
, <a class="el" href="class_bam_tools_1_1_sam_read_group_dictionary.html#a7466d351122e16fc9eaa263cf24c5cc4">BamTools::SamReadGroupDictionary</a>
, <a class="el" href="class_bam_tools_1_1_sam_sequence_dictionary.html#aff18163f91950c1357540bd465b587d3">BamTools::SamSequenceDictionary</a>
</li>
<li>Create()
: <a class="el" href="class_bam_tools_1_1_bam_index.html#acc647ada98efea37e6bc1dff49f03d43">BamTools::BamIndex</a>
</li>
<li>CreateIndex()
: <a class="el" href="class_bam_tools_1_1_bam_reader.html#a050af09369dd60bf0db3168727a201b4">BamTools::BamReader</a>
</li>
<li>CreateIndexes()
: <a class="el" href="class_bam_tools_1_1_bam_multi_reader.html#adfefc02fd813f5d26325a9eb9299de5a">BamTools::BamMultiReader</a>
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