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<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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   &#160;<span id="projectnumber">2.4.1</span>
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<div class="contents">
&#160;

<h3><a id="index_b"></a>- b -</h3><ul>
<li>BAM_ALIGNMENT_DUPLICATE
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a37050e3b292a5b87c30bd374c429cfed">BamTools::Constants</a>
</li>
<li>BAM_ALIGNMENT_MATE_REVERSE_STRAND
: <a class="el" href="namespace_bam_tools_1_1_constants.html#ab80397a7feb8e03487a7bde45408eea0">BamTools::Constants</a>
</li>
<li>BAM_ALIGNMENT_MATE_UNMAPPED
: <a class="el" href="namespace_bam_tools_1_1_constants.html#aeb3c4065636d76514199ee8f8bb32ba0">BamTools::Constants</a>
</li>
<li>BAM_ALIGNMENT_PAIRED
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a3f48cc7d5bc98ba489b5f93655006c83">BamTools::Constants</a>
</li>
<li>BAM_ALIGNMENT_PROPER_PAIR
: <a class="el" href="namespace_bam_tools_1_1_constants.html#acf91d3f746dd27a9582730dde5065d1f">BamTools::Constants</a>
</li>
<li>BAM_ALIGNMENT_QC_FAILED
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a6fe3a16d10c529664c82a3c561dd0260">BamTools::Constants</a>
</li>
<li>BAM_ALIGNMENT_READ_1
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a8f879d2da352f2ada6f1cf232203fa00">BamTools::Constants</a>
</li>
<li>BAM_ALIGNMENT_READ_2
: <a class="el" href="namespace_bam_tools_1_1_constants.html#aa46eb732dfd824a85df2131cd0af0c51">BamTools::Constants</a>
</li>
<li>BAM_ALIGNMENT_REVERSE_STRAND
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a942c3eb75b622e7da410107c22ee01dd">BamTools::Constants</a>
</li>
<li>BAM_ALIGNMENT_SECONDARY
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a55cea93676b7c14b9f56c069feec81ae">BamTools::Constants</a>
</li>
<li>BAM_ALIGNMENT_UNMAPPED
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a0af300f2f62e62839a888338e9009ada">BamTools::Constants</a>
</li>
<li>BAM_BASECODE_A
: <a class="el" href="namespace_bam_tools_1_1_constants.html#ac91f463b6a3b6df41b537cd4683b6bd4">BamTools::Constants</a>
</li>
<li>BAM_BASECODE_B
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a4adb27270a66ea6874aaa4f27623c0ce">BamTools::Constants</a>
</li>
<li>BAM_BASECODE_C
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a4334def5a15ac8f47d44d5e1a736a2bd">BamTools::Constants</a>
</li>
<li>BAM_BASECODE_D
: <a class="el" href="namespace_bam_tools_1_1_constants.html#aac93d588e3bb076ffe14dc8719d0597b">BamTools::Constants</a>
</li>
<li>BAM_BASECODE_EQUAL
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a6b380ae8d3813f34d784ffe744009443">BamTools::Constants</a>
</li>
<li>BAM_BASECODE_G
: <a class="el" href="namespace_bam_tools_1_1_constants.html#ae3415505557271c7b3482c37b6fe7095">BamTools::Constants</a>
</li>
<li>BAM_BASECODE_H
: <a class="el" href="namespace_bam_tools_1_1_constants.html#aee9ce0c110739bf8bd3cdd28733ea0e1">BamTools::Constants</a>
</li>
<li>BAM_BASECODE_K
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a991fe0c7ab00edb8dcfcfb633010a55a">BamTools::Constants</a>
</li>
<li>BAM_BASECODE_M
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a29e1115d2b79fc100ecab38adb40db67">BamTools::Constants</a>
</li>
<li>BAM_BASECODE_N
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a395d8a5eff77f3abb53b0d2bf2952e0d">BamTools::Constants</a>
</li>
<li>BAM_BASECODE_R
: <a class="el" href="namespace_bam_tools_1_1_constants.html#af58d5abf790943c6730e1709456d342a">BamTools::Constants</a>
</li>
<li>BAM_BASECODE_S
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a10fad45bead6c1c0e05b7c7ccd67b8e3">BamTools::Constants</a>
</li>
<li>BAM_BASECODE_T
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a4c4976bb95ab86fda4ebdc1af64488df">BamTools::Constants</a>
</li>
<li>BAM_BASECODE_V
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a61c28e76e68e67316e96e5f11c23b2c1">BamTools::Constants</a>
</li>
<li>BAM_BASECODE_W
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a507d614e3a07eda97c51c9d5a4ed5d10">BamTools::Constants</a>
</li>
<li>BAM_BASECODE_Y
: <a class="el" href="namespace_bam_tools_1_1_constants.html#aa57cf890a2ac91ba279541f0e924ba0b">BamTools::Constants</a>
</li>
<li>BAM_CIGAR_DEL
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a7416fc35d41b4eea72a07f8b4bf202ba">BamTools::Constants</a>
</li>
<li>BAM_CIGAR_DEL_CHAR
: <a class="el" href="namespace_bam_tools_1_1_constants.html#ab67f12cc6a7c8d5ad0d276d7ab73ed32">BamTools::Constants</a>
</li>
<li>BAM_CIGAR_HARDCLIP
: <a class="el" href="namespace_bam_tools_1_1_constants.html#afca0644edb22a67ca38e2547df9d07de">BamTools::Constants</a>
</li>
<li>BAM_CIGAR_HARDCLIP_CHAR
: <a class="el" href="namespace_bam_tools_1_1_constants.html#aeb8cfe26e4d02dd3147ef1535f22ab4b">BamTools::Constants</a>
</li>
<li>BAM_CIGAR_INS
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a58358f7f33aff9bb47d3cebd6495cf46">BamTools::Constants</a>
</li>
<li>BAM_CIGAR_INS_CHAR
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a34b5b378b1c97f6c65e0b924e9e6eca3">BamTools::Constants</a>
</li>
<li>BAM_CIGAR_LOOKUP
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a5df64e7330adc1a424c63a9df346b714">BamTools::Constants</a>
</li>
<li>BAM_CIGAR_MASK
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a8e2e4a56c82f139cd47a520ed588a67c">BamTools::Constants</a>
</li>
<li>BAM_CIGAR_MATCH
: <a class="el" href="namespace_bam_tools_1_1_constants.html#aa82388acae7dc4aa8419e38ea34907d0">BamTools::Constants</a>
</li>
<li>BAM_CIGAR_MATCH_CHAR
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a49b43dd10eb1fb2797f6dc9563c72684">BamTools::Constants</a>
</li>
<li>BAM_CIGAR_MISMATCH
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a15ed7a86971ec7829de7f711429546b7">BamTools::Constants</a>
</li>
<li>BAM_CIGAR_MISMATCH_CHAR
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a7fa8715e1c64c9afaaa76c6ad7275287">BamTools::Constants</a>
</li>
<li>BAM_CIGAR_PAD
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a2e275e65b17bd297c12e3fee1345308d">BamTools::Constants</a>
</li>
<li>BAM_CIGAR_PAD_CHAR
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a87cb872b98fac4e5bfa832c3b8b6d652">BamTools::Constants</a>
</li>
<li>BAM_CIGAR_REFSKIP
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a2d143a0515309004325acf6de92d677d">BamTools::Constants</a>
</li>
<li>BAM_CIGAR_REFSKIP_CHAR
: <a class="el" href="namespace_bam_tools_1_1_constants.html#ae1abd2b2a5af02ff5e2947006a314baa">BamTools::Constants</a>
</li>
<li>BAM_CIGAR_SEQMATCH
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a2d48281859778c215ac640b775958771">BamTools::Constants</a>
</li>
<li>BAM_CIGAR_SEQMATCH_CHAR
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a3ba73be6eb4d6f4b0b15d4496c069bdb">BamTools::Constants</a>
</li>
<li>BAM_CIGAR_SHIFT
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a2a8e9fd624e8d5e320c755f06452bfdc">BamTools::Constants</a>
</li>
<li>BAM_CIGAR_SOFTCLIP
: <a class="el" href="namespace_bam_tools_1_1_constants.html#adf8b2798aa1bdbcf114f0322c8e3d3f8">BamTools::Constants</a>
</li>
<li>BAM_CIGAR_SOFTCLIP_CHAR
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a4c5fb54257c31e13169dbdfdec7ec9be">BamTools::Constants</a>
</li>
<li>BAM_CORE_BUFFER_SIZE
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a4f333c53a00ae1b2f2cf24710f380de9">BamTools::Constants</a>
</li>
<li>BAM_CORE_SIZE
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a683a67e3dcf74ab031fc2da70befe686">BamTools::Constants</a>
</li>
<li>BAM_DNA_A
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a6c0e3b4f5135b1fa1e04f09a9dc6cb8c">BamTools::Constants</a>
</li>
<li>BAM_DNA_B
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a3952ee2392a20ff0fecc0e23e6dbd824">BamTools::Constants</a>
</li>
<li>BAM_DNA_C
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a9453e08466bafe404192c37740d8b774">BamTools::Constants</a>
</li>
<li>BAM_DNA_D
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a226bb4b1b71d17c473fac07b0f415726">BamTools::Constants</a>
</li>
<li>BAM_DNA_DEL
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a4b2587bfc495ede245b2ca396efdd98b">BamTools::Constants</a>
</li>
<li>BAM_DNA_EQUAL
: <a class="el" href="namespace_bam_tools_1_1_constants.html#ae670ade3f5071f0744471c7adcb74ba9">BamTools::Constants</a>
</li>
<li>BAM_DNA_G
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a38de013d628dfdc78ce5c3ebb7cd01ba">BamTools::Constants</a>
</li>
<li>BAM_DNA_H
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a16e28e4f2f2a2c7de27d5184fefa1b75">BamTools::Constants</a>
</li>
<li>BAM_DNA_K
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a5a57c248035362eba166d501c5792dc3">BamTools::Constants</a>
</li>
<li>BAM_DNA_LOOKUP
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a85a206d07dc03d3c54987e38ea9ebddb">BamTools::Constants</a>
</li>
<li>BAM_DNA_M
: <a class="el" href="namespace_bam_tools_1_1_constants.html#abf94325163a7b82ea416e5f972480ec5">BamTools::Constants</a>
</li>
<li>BAM_DNA_N
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a151bb15603efbe324e95fc2a92629c15">BamTools::Constants</a>
</li>
<li>BAM_DNA_PAD
: <a class="el" href="namespace_bam_tools_1_1_constants.html#ac6b15e4b7dc580741f2e38207a1f828a">BamTools::Constants</a>
</li>
<li>BAM_DNA_R
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a58a542eed79ee707009dd28ed3ace18a">BamTools::Constants</a>
</li>
<li>BAM_DNA_S
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a8619efce7bc47c02d7ca8a9ffa27f5e4">BamTools::Constants</a>
</li>
<li>BAM_DNA_T
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a2cc240013a9c3f6b19c271a088c60e86">BamTools::Constants</a>
</li>
<li>BAM_DNA_V
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a29542377dc9e447eb458eb115b4cf2a2">BamTools::Constants</a>
</li>
<li>BAM_DNA_W
: <a class="el" href="namespace_bam_tools_1_1_constants.html#adee5ad65de905fc005c1e60cad193d97">BamTools::Constants</a>
</li>
<li>BAM_DNA_Y
: <a class="el" href="namespace_bam_tools_1_1_constants.html#afbc767b14d3318295a754112881ca64a">BamTools::Constants</a>
</li>
<li>BAM_HEADER_MAGIC
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a4d420915043283204725c9014e02ba73">BamTools::Constants</a>
</li>
<li>BAM_HEADER_MAGIC_LENGTH
: <a class="el" href="namespace_bam_tools_1_1_constants.html#aa07a8f5b5806d868253dda7bf08f3516">BamTools::Constants</a>
</li>
<li>BAM_SIZEOF_INT
: <a class="el" href="namespace_bam_tools_1_1_constants.html#aab7577dd1e0aa486b2c41b571246734a">BamTools::Constants</a>
</li>
<li>BAM_TAG_ARRAYBASE_SIZE
: <a class="el" href="namespace_bam_tools_1_1_constants.html#aff396fa749e1439449433191eae166c7">BamTools::Constants</a>
</li>
<li>BAM_TAG_TAGSIZE
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a4d1b3e2b26a9d163336a4a83c62b86b7">BamTools::Constants</a>
</li>
<li>BAM_TAG_TYPE_ARRAY
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a53c2f04fc2e633f61e8f39264b6ad0b0">BamTools::Constants</a>
</li>
<li>BAM_TAG_TYPE_ASCII
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a25602acbbce34e865d67d75b9966a4fc">BamTools::Constants</a>
</li>
<li>BAM_TAG_TYPE_FLOAT
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a5f4b4689a7898fde204f9f3275a6bcdf">BamTools::Constants</a>
</li>
<li>BAM_TAG_TYPE_HEX
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a1f432cf41f5c315f8da46f302ab9cdc4">BamTools::Constants</a>
</li>
<li>BAM_TAG_TYPE_INT16
: <a class="el" href="namespace_bam_tools_1_1_constants.html#aa51e6bf07e0ec1f00072477492d31a57">BamTools::Constants</a>
</li>
<li>BAM_TAG_TYPE_INT32
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a20a298552510340fdc2b76c496186884">BamTools::Constants</a>
</li>
<li>BAM_TAG_TYPE_INT8
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a8cb4f3703011f90521564830a7f7df01">BamTools::Constants</a>
</li>
<li>BAM_TAG_TYPE_STRING
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a7f2d8fb36a83c9f0b14ec88100f69d62">BamTools::Constants</a>
</li>
<li>BAM_TAG_TYPE_UINT16
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a9b7df792a6c644788360152e2cf56a3c">BamTools::Constants</a>
</li>
<li>BAM_TAG_TYPE_UINT32
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a657c724f6561af0520aa6c2f4c23f740">BamTools::Constants</a>
</li>
<li>BAM_TAG_TYPE_UINT8
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a0c4f77ed450936979e858e0703324dab">BamTools::Constants</a>
</li>
<li>BAM_TAG_TYPESIZE
: <a class="el" href="namespace_bam_tools_1_1_constants.html#ad0df071315bb6be4d088850ac4951a26">BamTools::Constants</a>
</li>
<li>BGZF_BLOCK_FOOTER_LENGTH
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a304dd2e0508b256210d337020fa3e799">BamTools::Constants</a>
</li>
<li>BGZF_BLOCK_HEADER_LENGTH
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a8bbc003086d82fb6ee96a23f21629359">BamTools::Constants</a>
</li>
<li>BGZF_DEFAULT_BLOCK_SIZE
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a203c88971271d392d7a1827bf9ac539c">BamTools::Constants</a>
</li>
<li>BGZF_ID1
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a93fe5fe12388a82e8fb9a13acda975b6">BamTools::Constants</a>
</li>
<li>BGZF_ID2
: <a class="el" href="namespace_bam_tools_1_1_constants.html#ab052aa80fdea15328df2079c45869069">BamTools::Constants</a>
</li>
<li>BGZF_LEN
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a447858f9f04354ecb4fc44f459b2e454">BamTools::Constants</a>
</li>
<li>BGZF_MAX_BLOCK_SIZE
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a862e9d172c9874c27977a8cd33550e75">BamTools::Constants</a>
</li>
<li>BGZF_XLEN
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a3aa314e8e6c6b9aba278f2347681e0dd">BamTools::Constants</a>
</li>
</ul>


<h3><a id="index_c"></a>- c -</h3><ul>
<li>CM_DEFLATE
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a1002dc50cdf3efd08d7948bbfcaf358c">BamTools::Constants</a>
</li>
</ul>


<h3><a id="index_f"></a>- f -</h3><ul>
<li>FLG_FEXTRA
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a70b443f3505285dfb1fea8eb6f30152e">BamTools::Constants</a>
</li>
</ul>


<h3><a id="index_g"></a>- g -</h3><ul>
<li>GZIP_ID1
: <a class="el" href="namespace_bam_tools_1_1_constants.html#aee658df0c9d9f30f0526649dd47d070a">BamTools::Constants</a>
</li>
<li>GZIP_ID2
: <a class="el" href="namespace_bam_tools_1_1_constants.html#af2f43258da96e8f108ef9840af01b28c">BamTools::Constants</a>
</li>
<li>GZIP_WINDOW_BITS
: <a class="el" href="namespace_bam_tools_1_1_constants.html#ac389ed90be1ed547275053e91574c05c">BamTools::Constants</a>
</li>
</ul>


<h3><a id="index_o"></a>- o -</h3><ul>
<li>OS_UNKNOWN
: <a class="el" href="namespace_bam_tools_1_1_constants.html#ae0b04e3c24a621fa9c8aca9593640087">BamTools::Constants</a>
</li>
</ul>


<h3><a id="index_s"></a>- s -</h3><ul>
<li>SAM_CO_BEGIN_TOKEN
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a9fa23d8339b7180dc4d950cab40c5a4a">BamTools::Constants</a>
</li>
<li>SAM_COLON
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a4dc947cf37ccd2db26a2e6f495d0b7b3">BamTools::Constants</a>
</li>
<li>SAM_CURRENT_VERSION
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a095be7b2fdb244feccdd82528d292859">BamTools::Constants</a>
</li>
<li>SAM_DIGITS
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a996b57e1830ec53e3df7a7e1f1e80ae2">BamTools::Constants</a>
</li>
<li>SAM_EQUAL
: <a class="el" href="namespace_bam_tools_1_1_constants.html#af1760b7edfc1298b8933e46d7a6e85ba">BamTools::Constants</a>
</li>
<li>SAM_HD_BEGIN_TOKEN
: <a class="el" href="namespace_bam_tools_1_1_constants.html#aee6159dc6e3f7209fa732f5bc9294544">BamTools::Constants</a>
</li>
<li>SAM_HD_GROUPORDER_NONE
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a397b6fe77af0e5b1bf1ecd74267b65d8">BamTools::Constants</a>
</li>
<li>SAM_HD_GROUPORDER_QUERY
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a9e0b09f1e709a961a5a8619e7e2f4264">BamTools::Constants</a>
</li>
<li>SAM_HD_GROUPORDER_REFERENCE
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a5bf78a6e49cc46255bded799ea0c1f3a">BamTools::Constants</a>
</li>
<li>SAM_HD_GROUPORDER_TAG
: <a class="el" href="namespace_bam_tools_1_1_constants.html#af3042c03a4b7fefcb14d1f819c81afe8">BamTools::Constants</a>
</li>
<li>SAM_HD_SORTORDER_COORDINATE
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a6474731ad6aafec1930e54dd3e6922a8">BamTools::Constants</a>
</li>
<li>SAM_HD_SORTORDER_QUERYNAME
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a09820f6d6eb58028bc29ef855604d634">BamTools::Constants</a>
</li>
<li>SAM_HD_SORTORDER_TAG
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a0f0b211aeda8c3464f48352bf4e3b82f">BamTools::Constants</a>
</li>
<li>SAM_HD_SORTORDER_UNKNOWN
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a51e7e505a0b484e512783270e889c43f">BamTools::Constants</a>
</li>
<li>SAM_HD_SORTORDER_UNSORTED
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a2a0a356ccd7f3b6f74770486a0445faf">BamTools::Constants</a>
</li>
<li>SAM_HD_VERSION_TAG
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a0883710c1fbb37c6963ebee0ccb101eb">BamTools::Constants</a>
</li>
<li>SAM_PERIOD
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a04941ea1a9a44bf6b99cbf9f182d1e67">BamTools::Constants</a>
</li>
<li>SAM_PG_BEGIN_TOKEN
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a0ed9a275357e92bbb4dcc03df3f84ccc">BamTools::Constants</a>
</li>
<li>SAM_PG_COMMANDLINE_TAG
: <a class="el" href="namespace_bam_tools_1_1_constants.html#ac818a5c5c7910329242c5f3c326a53d3">BamTools::Constants</a>
</li>
<li>SAM_PG_ID_TAG
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a50cd815bb5dbb11ee5c8d8abdd83ec39">BamTools::Constants</a>
</li>
<li>SAM_PG_NAME_TAG
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a6e605af26908592f00b06588bd47ea5d">BamTools::Constants</a>
</li>
<li>SAM_PG_PREVIOUSPROGRAM_TAG
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a13b1d3b04b9db66bab3976aac383f52d">BamTools::Constants</a>
</li>
<li>SAM_PG_VERSION_TAG
: <a class="el" href="namespace_bam_tools_1_1_constants.html#ac7fc329a6ec0fd91da34f85cfa64c954">BamTools::Constants</a>
</li>
<li>SAM_RG_BEGIN_TOKEN
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a44454cde3e36ea93dfde57976a028090">BamTools::Constants</a>
</li>
<li>SAM_RG_DESCRIPTION_TAG
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a77caaa01b98ab47c02643388e5831f4f">BamTools::Constants</a>
</li>
<li>SAM_RG_FLOWORDER_TAG
: <a class="el" href="namespace_bam_tools_1_1_constants.html#abd030018d924800a554e2d179b62d694">BamTools::Constants</a>
</li>
<li>SAM_RG_ID_TAG
: <a class="el" href="namespace_bam_tools_1_1_constants.html#aea7734f1ca755214acd4c757df25f6d4">BamTools::Constants</a>
</li>
<li>SAM_RG_KEYSEQUENCE_TAG
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a50d3a40383afffd6a37a878388b36c29">BamTools::Constants</a>
</li>
<li>SAM_RG_LIBRARY_TAG
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a5420ec349bd3fa2ba1c32ab750fd6718">BamTools::Constants</a>
</li>
<li>SAM_RG_PLATFORMUNIT_TAG
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a95e5e09f71b636ea4a65a5897b34afa0">BamTools::Constants</a>
</li>
<li>SAM_RG_PREDICTEDINSERTSIZE_TAG
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a80b33283c1c7c233227b4131e78ebd33">BamTools::Constants</a>
</li>
<li>SAM_RG_PRODUCTIONDATE_TAG
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a4201e2b0e8de121b95826e6e82cb93e7">BamTools::Constants</a>
</li>
<li>SAM_RG_PROGRAM_TAG
: <a class="el" href="namespace_bam_tools_1_1_constants.html#afe3a74734ff2ea5f8e5a47e4cd92acf7">BamTools::Constants</a>
</li>
<li>SAM_RG_SAMPLE_TAG
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a0d517424c42c32b0cac1ab06d42c3ee4">BamTools::Constants</a>
</li>
<li>SAM_RG_SEQCENTER_TAG
: <a class="el" href="namespace_bam_tools_1_1_constants.html#aa5e30b73707ee51e927d4f6a1d53f536">BamTools::Constants</a>
</li>
<li>SAM_RG_SEQTECHNOLOGY_CAPILLARY
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a9a3f6e2e146280a3491d67b60a4660f2">BamTools::Constants</a>
</li>
<li>SAM_RG_SEQTECHNOLOGY_HELICOS
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a6973f23643e98e63c830875b00248b25">BamTools::Constants</a>
</li>
<li>SAM_RG_SEQTECHNOLOGY_ILLUMINA
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a420e24c36fef988522dfe4f444845f8d">BamTools::Constants</a>
</li>
<li>SAM_RG_SEQTECHNOLOGY_IONTORRENT
: <a class="el" href="namespace_bam_tools_1_1_constants.html#aa27d63d2957b18174007b7600a541af4">BamTools::Constants</a>
</li>
<li>SAM_RG_SEQTECHNOLOGY_LS454
: <a class="el" href="namespace_bam_tools_1_1_constants.html#aae01cde6c677be076673143a1ca3343e">BamTools::Constants</a>
</li>
<li>SAM_RG_SEQTECHNOLOGY_PACBIO
: <a class="el" href="namespace_bam_tools_1_1_constants.html#aa4a7724701b8368f98fdb92dd799e102">BamTools::Constants</a>
</li>
<li>SAM_RG_SEQTECHNOLOGY_SOLID
: <a class="el" href="namespace_bam_tools_1_1_constants.html#adc82798d04d6b2f45d03fece39d350a0">BamTools::Constants</a>
</li>
<li>SAM_RG_SEQTECHNOLOGY_TAG
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a94c416f9cc9c0fde5f4ceb8ce454bee1">BamTools::Constants</a>
</li>
<li>SAM_SQ_ASSEMBLYID_TAG
: <a class="el" href="namespace_bam_tools_1_1_constants.html#afa271493666987fe6adcc1622ab53f21">BamTools::Constants</a>
</li>
<li>SAM_SQ_BEGIN_TOKEN
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a1137bdeb0d037ed4d6cde982a53d86ec">BamTools::Constants</a>
</li>
<li>SAM_SQ_CHECKSUM_TAG
: <a class="el" href="namespace_bam_tools_1_1_constants.html#ad06d1bfea017d27dc4c5bb881053c125">BamTools::Constants</a>
</li>
<li>SAM_SQ_LENGTH_MAX
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a6d3d5247b25a5464b1faec04624ed604">BamTools::Constants</a>
</li>
<li>SAM_SQ_LENGTH_MIN
: <a class="el" href="namespace_bam_tools_1_1_constants.html#add952cff9084af884308a80c372288d8">BamTools::Constants</a>
</li>
<li>SAM_SQ_LENGTH_TAG
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a33200e721ce47ea5b3c3f868398556fe">BamTools::Constants</a>
</li>
<li>SAM_SQ_NAME_TAG
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a4f7f64cbf1b9867dd1c17065d4bf9164">BamTools::Constants</a>
</li>
<li>SAM_SQ_SPECIES_TAG
: <a class="el" href="namespace_bam_tools_1_1_constants.html#aeb9b3527c516157653a1aa021e7a4cb1">BamTools::Constants</a>
</li>
<li>SAM_SQ_URI_TAG
: <a class="el" href="namespace_bam_tools_1_1_constants.html#aab2777c1038ee71bf8d88e016fabd033">BamTools::Constants</a>
</li>
<li>SAM_STAR
: <a class="el" href="namespace_bam_tools_1_1_constants.html#ae61b05f20c74192ed3e962d6a629fd2e">BamTools::Constants</a>
</li>
<li>SAM_TAB
: <a class="el" href="namespace_bam_tools_1_1_constants.html#ad03ece1e8f540a42ee36e0eb833d12b3">BamTools::Constants</a>
</li>
</ul>


<h3><a id="index_z"></a>- z -</h3><ul>
<li>Z_DEFAULT_MEM_LEVEL
: <a class="el" href="namespace_bam_tools_1_1_constants.html#a7e609a2244b193c11b17f045322c6638">BamTools::Constants</a>
</li>
</ul>
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