This file is indexed.

/usr/share/doc/libbamtools-dev/html/struct_bam_tools_1_1_algorithms_1_1_sort_1_1_unsorted.html is in libbamtools-doc 2.4.1+dfsg-2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
<meta http-equiv="X-UA-Compatible" content="IE=9"/>
<meta name="generator" content="Doxygen 1.8.13"/>
<meta name="viewport" content="width=device-width, initial-scale=1"/>
<title>BamTools: BamTools::Algorithms::Sort::Unsorted Struct Reference</title>
<link href="tabs.css" rel="stylesheet" type="text/css"/>
<script type="text/javascript" src="jquery.js"></script>
<script type="text/javascript" src="dynsections.js"></script>
<link href="search/search.css" rel="stylesheet" type="text/css"/>
<script type="text/javascript" src="search/searchdata.js"></script>
<script type="text/javascript" src="search/search.js"></script>
<link href="doxygen.css" rel="stylesheet" type="text/css" />
</head>
<body>
<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
<div id="titlearea">
<table cellspacing="0" cellpadding="0">
 <tbody>
 <tr style="height: 56px;">
  <td id="projectalign" style="padding-left: 0.5em;">
   <div id="projectname">BamTools
   &#160;<span id="projectnumber">2.4.1</span>
   </div>
  </td>
 </tr>
 </tbody>
</table>
</div>
<!-- end header part -->
<!-- Generated by Doxygen 1.8.13 -->
<script type="text/javascript">
var searchBox = new SearchBox("searchBox", "search",false,'Search');
</script>
<script type="text/javascript" src="menudata.js"></script>
<script type="text/javascript" src="menu.js"></script>
<script type="text/javascript">
$(function() {
  initMenu('',true,false,'search.php','Search');
  $(document).ready(function() { init_search(); });
});
</script>
<div id="main-nav"></div>
<!-- window showing the filter options -->
<div id="MSearchSelectWindow"
     onmouseover="return searchBox.OnSearchSelectShow()"
     onmouseout="return searchBox.OnSearchSelectHide()"
     onkeydown="return searchBox.OnSearchSelectKey(event)">
</div>

<!-- iframe showing the search results (closed by default) -->
<div id="MSearchResultsWindow">
<iframe src="javascript:void(0)" frameborder="0" 
        name="MSearchResults" id="MSearchResults">
</iframe>
</div>

<div id="nav-path" class="navpath">
  <ul>
<li class="navelem"><a class="el" href="namespace_bam_tools.html">BamTools</a></li><li class="navelem"><a class="el" href="namespace_bam_tools_1_1_algorithms.html">Algorithms</a></li><li class="navelem"><a class="el" href="struct_bam_tools_1_1_algorithms_1_1_sort.html">Sort</a></li><li class="navelem"><a class="el" href="struct_bam_tools_1_1_algorithms_1_1_sort_1_1_unsorted.html">Unsorted</a></li>  </ul>
</div>
</div><!-- top -->
<div class="header">
  <div class="summary">
<a href="#pub-methods">Public Member Functions</a> &#124;
<a href="struct_bam_tools_1_1_algorithms_1_1_sort_1_1_unsorted-members.html">List of all members</a>  </div>
  <div class="headertitle">
<div class="title">BamTools::Algorithms::Sort::Unsorted Struct Reference</div>  </div>
</div><!--header-->
<div class="contents">

<p>Placeholder function object.  
 <a href="struct_bam_tools_1_1_algorithms_1_1_sort_1_1_unsorted.html#details">More...</a></p>

<p><code>#include &lt;<a class="el" href="_sort_8h_source.html">Sort.h</a>&gt;</code></p>

<p>Inherits AlignmentSortBase.</p>
<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
Public Member Functions</h2></td></tr>
<tr class="memitem:ae7d272c34af22496ef4aa8233cd34b0e"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="struct_bam_tools_1_1_algorithms_1_1_sort_1_1_unsorted.html#ae7d272c34af22496ef4aa8233cd34b0e">operator()</a> (const <a class="el" href="class_bam_tools_1_1_bam_alignment.html">BamTools::BamAlignment</a> &amp;, const <a class="el" href="class_bam_tools_1_1_bam_alignment.html">BamTools::BamAlignment</a> &amp;)</td></tr>
<tr class="separator:ae7d272c34af22496ef4aa8233cd34b0e"><td class="memSeparator" colspan="2">&#160;</td></tr>
</table>
<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<div class="textblock"><p>Placeholder function object. </p>
<p>This function object exists purely to allow for dropping a "do not care" ordering into methods, containers, etc that are designed to work with the other sorting objects.</p>
<div class="fragment"><div class="line">std::set&lt;BamAlignment, Sort::ByName&gt;;   <span class="comment">// STL set, ordered on alignment name</span></div><div class="line">std::set&lt;BamAlignment, Sort::Unsorted&gt;; <span class="comment">// STL set, unsorted (but probably insertion order)</span></div></div><!-- fragment --> </div><h2 class="groupheader">Member Function Documentation</h2>
<a id="ae7d272c34af22496ef4aa8233cd34b0e"></a>
<h2 class="memtitle"><span class="permalink"><a href="#ae7d272c34af22496ef4aa8233cd34b0e">&#9670;&nbsp;</a></span>operator()()</h2>

<div class="memitem">
<div class="memproto">
<table class="mlabels">
  <tr>
  <td class="mlabels-left">
      <table class="memname">
        <tr>
          <td class="memname">bool BamTools::Algorithms::Sort::Unsorted::operator() </td>
          <td>(</td>
          <td class="paramtype">const <a class="el" href="class_bam_tools_1_1_bam_alignment.html">BamTools::BamAlignment</a> &amp;&#160;</td>
          <td class="paramname">, </td>
        </tr>
        <tr>
          <td class="paramkey"></td>
          <td></td>
          <td class="paramtype">const <a class="el" href="class_bam_tools_1_1_bam_alignment.html">BamTools::BamAlignment</a> &amp;&#160;</td>
          <td class="paramname">&#160;</td>
        </tr>
        <tr>
          <td></td>
          <td>)</td>
          <td></td><td></td>
        </tr>
      </table>
  </td>
  <td class="mlabels-right">
<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
  </tr>
</table>
</div><div class="memdoc">

</div>
</div>
<hr/>The documentation for this struct was generated from the following file:<ul>
<li><a class="el" href="_sort_8h_source.html">Sort.h</a></li>
</ul>
</div><!-- contents -->
<!-- start footer part -->
<hr class="footer"/><address class="footer"><small>
Generated by &#160;<a href="http://www.doxygen.org/index.html">
<img class="footer" src="doxygen.png" alt="doxygen"/>
</a> 1.8.13
</small></address>
</body>
</html>