/usr/share/doc/libbamtools-dev/html/struct_bam_tools_1_1_cigar_op.html is in libbamtools-doc 2.4.1+dfsg-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 | <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
<meta http-equiv="X-UA-Compatible" content="IE=9"/>
<meta name="generator" content="Doxygen 1.8.13"/>
<meta name="viewport" content="width=device-width, initial-scale=1"/>
<title>BamTools: BamTools::CigarOp Struct Reference</title>
<link href="tabs.css" rel="stylesheet" type="text/css"/>
<script type="text/javascript" src="jquery.js"></script>
<script type="text/javascript" src="dynsections.js"></script>
<link href="search/search.css" rel="stylesheet" type="text/css"/>
<script type="text/javascript" src="search/searchdata.js"></script>
<script type="text/javascript" src="search/search.js"></script>
<link href="doxygen.css" rel="stylesheet" type="text/css" />
</head>
<body>
<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
<div id="titlearea">
<table cellspacing="0" cellpadding="0">
<tbody>
<tr style="height: 56px;">
<td id="projectalign" style="padding-left: 0.5em;">
<div id="projectname">BamTools
 <span id="projectnumber">2.4.1</span>
</div>
</td>
</tr>
</tbody>
</table>
</div>
<!-- end header part -->
<!-- Generated by Doxygen 1.8.13 -->
<script type="text/javascript">
var searchBox = new SearchBox("searchBox", "search",false,'Search');
</script>
<script type="text/javascript" src="menudata.js"></script>
<script type="text/javascript" src="menu.js"></script>
<script type="text/javascript">
$(function() {
initMenu('',true,false,'search.php','Search');
$(document).ready(function() { init_search(); });
});
</script>
<div id="main-nav"></div>
<!-- window showing the filter options -->
<div id="MSearchSelectWindow"
onmouseover="return searchBox.OnSearchSelectShow()"
onmouseout="return searchBox.OnSearchSelectHide()"
onkeydown="return searchBox.OnSearchSelectKey(event)">
</div>
<!-- iframe showing the search results (closed by default) -->
<div id="MSearchResultsWindow">
<iframe src="javascript:void(0)" frameborder="0"
name="MSearchResults" id="MSearchResults">
</iframe>
</div>
<div id="nav-path" class="navpath">
<ul>
<li class="navelem"><a class="el" href="namespace_bam_tools.html">BamTools</a></li><li class="navelem"><a class="el" href="struct_bam_tools_1_1_cigar_op.html">CigarOp</a></li> </ul>
</div>
</div><!-- top -->
<div class="header">
<div class="summary">
<a href="#pub-methods">Public Member Functions</a> |
<a href="#pub-attribs">Public Attributes</a> |
<a href="struct_bam_tools_1_1_cigar_op-members.html">List of all members</a> </div>
<div class="headertitle">
<div class="title">BamTools::CigarOp Struct Reference</div> </div>
</div><!--header-->
<div class="contents">
<p>Represents a CIGAR alignment operation.
<a href="struct_bam_tools_1_1_cigar_op.html#details">More...</a></p>
<p><code>#include <<a class="el" href="_bam_aux_8h_source.html">BamAux.h</a>></code></p>
<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
Public Member Functions</h2></td></tr>
<tr class="memitem:a7ad38f6f438ca690e80e919ffa8a28ef"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="struct_bam_tools_1_1_cigar_op.html#a7ad38f6f438ca690e80e919ffa8a28ef">CigarOp</a> (const char type='\0', const uint32_t &length=0)</td></tr>
<tr class="memdesc:a7ad38f6f438ca690e80e919ffa8a28ef"><td class="mdescLeft"> </td><td class="mdescRight">constructor <a href="#a7ad38f6f438ca690e80e919ffa8a28ef">More...</a><br /></td></tr>
<tr class="separator:a7ad38f6f438ca690e80e919ffa8a28ef"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-attribs"></a>
Public Attributes</h2></td></tr>
<tr class="memitem:afd1ea1fa2eb044569c301157137dcb82"><td class="memItemLeft" align="right" valign="top">char </td><td class="memItemRight" valign="bottom"><a class="el" href="struct_bam_tools_1_1_cigar_op.html#afd1ea1fa2eb044569c301157137dcb82">Type</a></td></tr>
<tr class="memdesc:afd1ea1fa2eb044569c301157137dcb82"><td class="mdescLeft"> </td><td class="mdescRight">CIGAR operation type (MIDNSHPX=) <a href="#afd1ea1fa2eb044569c301157137dcb82">More...</a><br /></td></tr>
<tr class="separator:afd1ea1fa2eb044569c301157137dcb82"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ae71433a878279710557a154b29b4bb17"><td class="memItemLeft" align="right" valign="top">uint32_t </td><td class="memItemRight" valign="bottom"><a class="el" href="struct_bam_tools_1_1_cigar_op.html#ae71433a878279710557a154b29b4bb17">Length</a></td></tr>
<tr class="memdesc:ae71433a878279710557a154b29b4bb17"><td class="mdescLeft"> </td><td class="mdescRight">CIGAR operation length (number of bases) <a href="#ae71433a878279710557a154b29b4bb17">More...</a><br /></td></tr>
<tr class="separator:ae71433a878279710557a154b29b4bb17"><td class="memSeparator" colspan="2"> </td></tr>
</table>
<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<div class="textblock"><p>Represents a CIGAR alignment operation. </p>
<dl class="section see"><dt>See also</dt><dd><a href="http://samtools.sourceforge.net/SAM1.pdf">http://samtools.sourceforge.net/SAM1.pdf</a> for more details on using CIGAR operations. </dd></dl>
</div><h2 class="groupheader">Constructor & Destructor Documentation</h2>
<a id="a7ad38f6f438ca690e80e919ffa8a28ef"></a>
<h2 class="memtitle"><span class="permalink"><a href="#a7ad38f6f438ca690e80e919ffa8a28ef">◆ </a></span>CigarOp()</h2>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
<tr>
<td class="mlabels-left">
<table class="memname">
<tr>
<td class="memname">BamTools::CigarOp::CigarOp </td>
<td>(</td>
<td class="paramtype">const char </td>
<td class="paramname"><em>type</em> = <code>'\0'</code>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">const uint32_t & </td>
<td class="paramname"><em>length</em> = <code>0</code> </td>
</tr>
<tr>
<td></td>
<td>)</td>
<td></td><td></td>
</tr>
</table>
</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">inline</span></span> </td>
</tr>
</table>
</div><div class="memdoc">
<p>constructor </p>
</div>
</div>
<h2 class="groupheader">Member Data Documentation</h2>
<a id="ae71433a878279710557a154b29b4bb17"></a>
<h2 class="memtitle"><span class="permalink"><a href="#ae71433a878279710557a154b29b4bb17">◆ </a></span>Length</h2>
<div class="memitem">
<div class="memproto">
<table class="memname">
<tr>
<td class="memname">uint32_t BamTools::CigarOp::Length</td>
</tr>
</table>
</div><div class="memdoc">
<p>CIGAR operation length (number of bases) </p>
</div>
</div>
<a id="afd1ea1fa2eb044569c301157137dcb82"></a>
<h2 class="memtitle"><span class="permalink"><a href="#afd1ea1fa2eb044569c301157137dcb82">◆ </a></span>Type</h2>
<div class="memitem">
<div class="memproto">
<table class="memname">
<tr>
<td class="memname">char BamTools::CigarOp::Type</td>
</tr>
</table>
</div><div class="memdoc">
<p>CIGAR operation type (MIDNSHPX=) </p>
</div>
</div>
<hr/>The documentation for this struct was generated from the following file:<ul>
<li><a class="el" href="_bam_aux_8h_source.html">BamAux.h</a></li>
</ul>
</div><!-- contents -->
<!-- start footer part -->
<hr class="footer"/><address class="footer"><small>
Generated by  <a href="http://www.doxygen.org/index.html">
<img class="footer" src="doxygen.png" alt="doxygen"/>
</a> 1.8.13
</small></address>
</body>
</html>
|