/usr/include/opengm/graphicalmodel/graphviews/factorgraph.hxx is in libopengm-dev 2.3.6+20160905-1build2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531 532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549 550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567 568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585 586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603 604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619 620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637 638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655 656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673 674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691 692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709 710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727 728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743 744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761 762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779 780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797 798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815 816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833 834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851 852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867 868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885 886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903 904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921 922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939 940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957 958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975 976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005 1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019 1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033 1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047 1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061 1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075 1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089 1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 | #pragma once
#ifndef OPENGM_FACTORGRAPH_HXX
#define OPENGM_FACTORGRAPH_HXX
#include <algorithm>
#include <limits>
#include "opengm/utilities/accessor_iterator.hxx"
#include "opengm/datastructures/randomaccessset.hxx"
#include "opengm/datastructures/partition.hxx"
#include <typeinfo>
namespace opengm {
/// Interface that makes an object of type S (the template parameter)
/// look like a (non-editable) factor graph.
template<class S,class I>
class FactorGraph {
private:
class VariableAccessor;
class FactorAccessor;
typedef I IndexType;
public:
typedef S SpecialType;
typedef AccessorIterator<VariableAccessor, true> ConstVariableIterator;
typedef AccessorIterator<FactorAccessor, true> ConstFactorIterator;
// required interface of S (the template parameter)
size_t numberOfVariables() const;
size_t numberOfVariables(const size_t) const;
size_t numberOfFactors() const;
size_t numberOfFactors(const size_t) const;
size_t variableOfFactor(const size_t, const size_t) const;
size_t factorOfVariable(const size_t, const size_t) const;
// functions that need not be member functions of S (the template parameter)
ConstVariableIterator variablesOfFactorBegin(const size_t) const;
ConstVariableIterator variablesOfFactorEnd(const size_t) const;
ConstFactorIterator factorsOfVariableBegin(const size_t) const;
ConstFactorIterator factorsOfVariableEnd(const size_t) const;
bool variableFactorConnection(const size_t, const size_t) const;
bool factorVariableConnection(const size_t, const size_t) const;
bool variableVariableConnection(const size_t, const size_t) const;
bool factorFactorConnection(const size_t, const size_t) const;
bool isAcyclic() const;
bool isConnected(marray::Vector<size_t>& representatives) const;
bool isChain(marray::Vector<size_t>&) const;
bool isGrid(marray::Matrix<size_t>&) const;
size_t maxFactorOrder() const;
bool maxFactorOrder(const size_t maxOrder) const;
size_t numberOfNthOrderFactorsOfVariable(const size_t, const size_t) const;
size_t numberOfNthOrderFactorsOfVariable(const size_t, const size_t, marray::Vector<size_t>&) const;
size_t secondVariableOfSecondOrderFactor(const size_t, const size_t) const;
// export functions
void variableAdjacencyMatrix(marray::Matrix<bool>&) const;
void variableAdjacencyList(std::vector<std::set<IndexType> >&) const;
void variableAdjacencyList(std::vector<RandomAccessSet<IndexType> >&) const;
void factorAdjacencyList(std::vector<std::set<IndexType> >&) const;
void factorAdjacencyList(std::vector<RandomAccessSet<IndexType> >&) const;
protected:
// cast operators
operator S&()
{ return static_cast<S&>(*this); }
operator S const&() const
{ return static_cast<const S&>(*this); }
template <class LIST>
bool shortestPath(const size_t, const size_t, LIST&, const LIST& = LIST()) const;
template <class LIST>
bool twoHopConnected(const size_t, const size_t, LIST&) const;
private:
class VariableAccessor {
public:
typedef size_t value_type;
VariableAccessor(const FactorGraph<S,I>* factorGraph = NULL, const size_t factor = 0)
: factorGraph_(factorGraph), factor_(factor)
{}
VariableAccessor(const FactorGraph<S,I>& factorGraph, const size_t factor = 0)
: factorGraph_(&factorGraph), factor_(factor)
{}
size_t size() const
{ OPENGM_ASSERT(factorGraph_ != NULL);
return factorGraph_->numberOfVariables(factor_); }
const size_t operator[](const size_t number) const
{ OPENGM_ASSERT(factorGraph_ != NULL);
return factorGraph_->variableOfFactor(factor_, number); }
bool operator==(const VariableAccessor& a) const
{ OPENGM_ASSERT(factorGraph_ != NULL);
return factor_ == a.factor_ && factorGraph_ == a.factorGraph_; }
private:
const FactorGraph<S,I>* factorGraph_;
size_t factor_;
};
class FactorAccessor {
public:
typedef I value_type;
FactorAccessor(const FactorGraph<S,I>* factorGraph = NULL, const size_t variable = 0)
: factorGraph_(factorGraph), variable_(variable)
{}
FactorAccessor(const FactorGraph<S,I>& factorGraph, const size_t variable = 0)
: factorGraph_(&factorGraph), variable_(variable)
{}
size_t size() const
{ OPENGM_ASSERT(factorGraph_ != NULL);
return factorGraph_->numberOfFactors(variable_); }
const size_t operator[](const size_t number) const
{ OPENGM_ASSERT(factorGraph_ != NULL);
return factorGraph_->factorOfVariable(variable_, number); }
bool operator==(const FactorAccessor& a) const
{ OPENGM_ASSERT(factorGraph_ != NULL);
return variable_ == a.variable_ && factorGraph_ == a.factorGraph_; }
private:
const FactorGraph<S,I>* factorGraph_;
size_t variable_;
};
template<class LIST>
void templatedVariableAdjacencyList(LIST&) const;
template<class LIST>
void templatedFactorAdjacencyList(LIST&) const;
};
/// \brief total number of variable nodes in the factor graph
/// \return number of variable nodes
template<class S,class I>
inline size_t
FactorGraph<S,I>::numberOfVariables() const
{
return static_cast<const SpecialType&>(*this).numberOfVariables();
}
/// \brief number of variable nodes connected to a factor node
/// \param factor factor index
/// \return number of variable nodes
template<class S,class I>
inline size_t
FactorGraph<S,I>::numberOfVariables
(
const size_t factor
) const
{
return static_cast<const SpecialType&>(*this).numberOfVariables(factor);
}
/// \brief total number of factor nodes in the factor graph
/// \return number of factor nodes
template<class S,class I>
inline size_t
FactorGraph<S,I>::numberOfFactors() const
{
return static_cast<const SpecialType&>(*this).numberOfFactors();
}
/// \brief number of factor nodes connected to a variable node
/// \param variable variable index
/// \return number of factor nodes
template<class S,class I>
inline size_t
FactorGraph<S,I>::numberOfFactors
(
const size_t variable
) const
{
return static_cast<const SpecialType&>(*this).numberOfFactors(variable);
}
/// \brief j-th variable node connected to a factor node
/// \param factor factor index
/// \param j number of the variable w.r.t. the factor
/// \return variable index
template<class S,class I>
inline size_t
FactorGraph<S,I>::variableOfFactor
(
const size_t factor,
const size_t j
) const
{
return static_cast<const SpecialType&>(*this).variableOfFactor(factor, j);
}
/// \brief j-th factor node connected to a variable node
/// \param variable variable index
/// \param j number of the factor w.r.t. the variable
/// \return factor index
template<class S,class I>
inline size_t
FactorGraph<S,I>::factorOfVariable
(
const size_t variable,
const size_t j
) const
{
return static_cast<const SpecialType&>(*this).factorOfVariable(variable, j);
}
/// \brief constant iterator to the beginning of the squence of variables connected to a factor
/// \param factor factor index
/// \return iterator
template<class S,class I>
inline typename FactorGraph<S,I>::ConstVariableIterator
FactorGraph<S,I>::variablesOfFactorBegin
(
const size_t factor
) const
{
VariableAccessor accessor(this, factor);
return ConstVariableIterator(accessor);
}
/// \brief constant iterator to the end of the squence of variables connected to a factor
/// \param factor factor index
/// \return iterator
template<class S,class I>
inline typename FactorGraph<S,I>::ConstVariableIterator
FactorGraph<S,I>::variablesOfFactorEnd
(
const size_t factor
) const
{
VariableAccessor accessor(this, factor);
return ConstVariableIterator(accessor, numberOfVariables(factor));
}
/// \brief constant iterator to the beginning of the squence of factors connected to a variable
/// \param variable variable index
/// \return iterator
template<class S,class I>
inline typename FactorGraph<S,I>::ConstFactorIterator
FactorGraph<S,I>::factorsOfVariableBegin
(
const size_t variable
) const
{
FactorAccessor accessor(this, variable);
return ConstFactorIterator(accessor);
}
/// \brief constant iterator to the end of the squence of factors connected to a variable
/// \param variable variable index
/// \return iterator
template<class S,class I>
inline typename FactorGraph<S,I>::ConstFactorIterator
FactorGraph<S,I>::factorsOfVariableEnd
(
const size_t variable
) const
{
FactorAccessor accessor(this, variable);
return ConstFactorIterator(accessor, numberOfFactors(variable));
}
/// \brief return true if a factor is connected to a variable
/// \param variable variable index
/// \param factor factor index
/// \return result
template<class S,class I>
inline bool
FactorGraph<S,I>::variableFactorConnection
(
const size_t variable,
const size_t factor
) const
{
OPENGM_ASSERT(factor < numberOfFactors());
OPENGM_ASSERT(variable < numberOfVariables());
if(!NO_DEBUG) {
for(size_t j=1; j<numberOfVariables(factor); ++j) {
OPENGM_ASSERT(variableOfFactor(factor, j-1) < variableOfFactor(factor, j));
}
}
return std::binary_search(variablesOfFactorBegin(factor),
variablesOfFactorEnd(factor), variable);
return false;
}
/// \brief return true if a variable is connected to a factor
/// \param factor factor index
/// \param variable variable index
/// \return result
template<class S,class I>
inline bool
FactorGraph<S,I>::factorVariableConnection
(
const size_t factor,
const size_t variable
) const
{
OPENGM_ASSERT(factor < numberOfFactors());
OPENGM_ASSERT(variable < numberOfVariables());
return variableFactorConnection(variable, factor);
}
/// \brief return true if a variable is connected to a variable
/// \param variable1 variable index
/// \param variable2 variable index
/// \return result
template<class S,class I>
inline bool
FactorGraph<S,I>::variableVariableConnection
(
const size_t variable1,
const size_t variable2
) const
{
OPENGM_ASSERT(variable1 < numberOfVariables());
OPENGM_ASSERT(variable2 < numberOfVariables());
if(variable1 != variable2) {
ConstFactorIterator it1 = factorsOfVariableBegin(variable1);
ConstFactorIterator it2 = factorsOfVariableBegin(variable2);
while(it1 != factorsOfVariableEnd(variable1) && it2 != factorsOfVariableEnd(variable2)) {
if(*it1 < *it2) {
++it1;
}
else if(*it1 == *it2) {
return true;
}
else {
++it2;
}
}
}
return false;
}
/// \brief return true if the factor graph (!) is acyclic
/// \return result
template<class S,class I>
bool
FactorGraph<S,I>::isAcyclic() const
{
const size_t NO_FACTOR = numberOfFactors();
const size_t NO_VARIABLE = numberOfVariables();
const size_t ROOT_FACTOR = numberOfVariables() + 1;
std::vector<size_t> factorFathers(numberOfFactors(), NO_VARIABLE);
std::vector<size_t> variableFathers(numberOfVariables(), NO_FACTOR);
std::queue<size_t> factorQueue;
std::queue<size_t> variableQueue;
for(size_t F = 0; F < numberOfFactors(); ++F) {
if(factorFathers[F] == NO_VARIABLE) {
factorFathers[F] = ROOT_FACTOR;
factorQueue.push(F);
while(!factorQueue.empty()) {
while(!factorQueue.empty()) {
const size_t f = factorQueue.front();
factorQueue.pop();
for(size_t j = 0; j < numberOfVariables(f); ++j) {
const size_t v = variableOfFactor(f, j);
if(variableFathers[v] == NO_FACTOR) {
variableFathers[v] = f;
variableQueue.push(v);
}
else if(factorFathers[f] != v) {
return false;
}
}
}
while(!variableQueue.empty()) {
const size_t v = variableQueue.front();
variableQueue.pop();
for(size_t j = 0; j < numberOfFactors(v); ++j) {
const size_t f = factorOfVariable(v, j);
if(factorFathers[f] == NO_VARIABLE) {
factorFathers[f] = v;
factorQueue.push(f);
}
else if(variableFathers[v] != f) {
return false;
}
}
}
}
}
}
return true;
}
/// \brief return true if the factor graph (!) is connected
/// \param[out] representatives A vector of variable id's where each id is a representative of a connected component.
/// \return result
template<class S,class I>
bool
FactorGraph<S,I>::isConnected(marray::Vector<size_t>& representatives) const
{
// check if factor graph has zero variables
if(numberOfVariables() == 0) {
return false;
}
// create a partition of all connected components
Partition<size_t> connectedComponents(numberOfVariables());
// iterate over all factors
for(size_t i = 0; i < numberOfFactors(); i++) {
// iterate over all connected variables of factor and merge them to one partition
const ConstVariableIterator variablesBegin = variablesOfFactorBegin(i);
const ConstVariableIterator variablesEnd = variablesOfFactorEnd(i);
OPENGM_ASSERT(variablesBegin != variablesEnd);
for(ConstVariableIterator iter = variablesBegin + 1; iter != variablesEnd; iter++) {
connectedComponents.merge(*(iter - 1), *iter);
}
}
// check number of connected components
OPENGM_ASSERT(connectedComponents.numberOfSets() > 0);
representatives = marray::Vector<size_t>(connectedComponents.numberOfSets());
connectedComponents.representatives(representatives.begin());
if(connectedComponents.numberOfSets() == 1) {
return true;
} else {
return false;
}
}
/// \brief return true if the factor graph (!) is a chain
/// \param[out] chainIDs A vector representing the chain, where chain(i) contains the corresponding variable ID.
/// \return result
template<class S,class I>
inline bool
FactorGraph<S,I>::isChain(marray::Vector<size_t>& chainIDs) const {
const size_t numVariables = numberOfVariables();
// check if factor graph has zero variables
if(numVariables == 0) {
return false;
}
// check Factor Order
if(!maxFactorOrder(2)) {
return false;
}
// special case: graph contains only one variable
if(numVariables == 1) {
chainIDs = marray::Vector<size_t>(numVariables);
chainIDs[0] = 0;
return true;
}
// find ends
marray::Vector<size_t> ends(2);
size_t detectedEnds = 0;
for(size_t i = 0; i < numVariables; i++) {
size_t countSecondOrderFactors = numberOfNthOrderFactorsOfVariable(i, 2);
if(countSecondOrderFactors == 1) {
if(detectedEnds > 1) {
return false;
}
ends[detectedEnds] = i;
detectedEnds++;
}
}
// two ends found?
if(detectedEnds != 2) {
return false;
}
chainIDs = marray::Vector<size_t>(numVariables);
// set ends
chainIDs[0] = ends[0];
chainIDs[numVariables - 1] = ends[1];
// try to traverse from first end to second end
// set predecessor and successor of ends[0]
size_t predecessor = ends[0];
OPENGM_ASSERT(numberOfVariables() < std::numeric_limits<size_t>::max());
size_t successor = std::numeric_limits<size_t>::max();
for(ConstFactorIterator iter = factorsOfVariableBegin(ends[0]); iter != factorsOfVariableEnd(ends[0]); iter++) {
if(numberOfVariables(*iter) == 2) {
successor = secondVariableOfSecondOrderFactor(ends[0], *iter);
}
}
OPENGM_ASSERT(successor != std::numeric_limits<size_t>::max());
// traverse chain while successor != ends[1]
size_t countTraversedVariables = 1;
while(successor != ends[1]) {
marray::Vector<size_t> secondOrderFactorIds;
size_t countSecondOrderFactors = numberOfNthOrderFactorsOfVariable(successor, 2, secondOrderFactorIds);
if(countSecondOrderFactors > 2) {
return false;
}
// add successor to chainIDs
chainIDs[countTraversedVariables] = successor;
countTraversedVariables++;
// update predecessor and successor
OPENGM_ASSERT(secondOrderFactorIds.size() == 2);
for(size_t j = 0; j < 2; j++) {
size_t possibleSuccesor = secondVariableOfSecondOrderFactor(successor, secondOrderFactorIds[j]);
if(possibleSuccesor != predecessor) {
predecessor = successor;
successor = possibleSuccesor;
break;
}
}
}
if(countTraversedVariables != numVariables - 1) {
// end of chain reached too soon
return false;
}
OPENGM_ASSERT(countTraversedVariables == numVariables - 1);
// check if last variable is really the expected second end
OPENGM_ASSERT(chainIDs[numVariables - 1] == ends[1]);
return true;
}
/// \brief return true if the factor graph (!) is a grid
/// \param[out] gridIDs A matrix representing the grid, where grid(i,j) contains the corresponding variable ID.
/// \return result
template<class S,class I>
inline bool
FactorGraph<S,I>::isGrid(marray::Matrix<size_t>& gridIDs) const {
// check if factor graph has zero variables
if(numberOfVariables() == 0) {
return false;
}
// check Factor Order
if(!maxFactorOrder(2)) {
return false;
}
// special case: graph contains only one variable
if(numberOfVariables() == 1) {
gridIDs = marray::Matrix<size_t>(1,1);
gridIDs(0, 0) = 0;
return true;
}
// check one dimensional case (e.g. graph is a chain)
marray::Vector<size_t> chainIDs;
bool graphIsChain = isChain(chainIDs);
if(graphIsChain) {
gridIDs = marray::Matrix<size_t>(1, chainIDs.size());
for(size_t i = 0; i < chainIDs.size(); i++) {
gridIDs(0, i) = chainIDs[i];
}
return true;
}
// find corner variables (variables connected to two second order factors)
// and outer hull variables
marray::Vector<size_t> cornerIDs(4);
size_t numCornersFound = 0;
std::list<size_t> outerHullVariableIDs;
for(size_t i = 0; i < numberOfVariables(); i++) {
size_t countSecondOrderFactors = numberOfNthOrderFactorsOfVariable(i, 2);
if(countSecondOrderFactors == 2) {
// corner found
if(numCornersFound > 3) {
return false;
}
cornerIDs(numCornersFound) = i;
numCornersFound++;
// corner is also an outer hull variable
outerHullVariableIDs.push_back(i);
} else if(countSecondOrderFactors == 3) {
outerHullVariableIDs.push_back(i);
} else if(countSecondOrderFactors > 4) {
// variable is connected to too many other variables
return false;
}
}
if(numCornersFound < 4) {
return false;
}
OPENGM_ASSERT(numCornersFound == 4);
// find shortest path from one corner to all other corners
std::vector<std::list<size_t> > shortestPaths(3);
if(!shortestPath(cornerIDs(0), cornerIDs(1), shortestPaths[0], outerHullVariableIDs)) {
return false;
}
if(!shortestPath(cornerIDs(0), cornerIDs(2), shortestPaths[1], outerHullVariableIDs)) {
return false;
}
if(!shortestPath(cornerIDs(0), cornerIDs(3), shortestPaths[2], outerHullVariableIDs)) {
return false;
}
// find diagonal corner
size_t diagonalCorner = 1;
for(size_t i = 1; i < 4; i++) {
if(shortestPaths[i - 1].size() > shortestPaths[diagonalCorner].size()) {
diagonalCorner = i;
}
}
// compute shortest paths from adjacent corners to diagonal corner
std::vector<std::list<size_t> > shortestAdjacentCornerPaths(2);
size_t shortestAdjacentCornerPathsComputed = 0;
for(size_t i = 1; i < 4; i++) {
if(i != diagonalCorner) {
if(!shortestPath(cornerIDs(i), cornerIDs(diagonalCorner), shortestAdjacentCornerPaths[shortestAdjacentCornerPathsComputed], outerHullVariableIDs)) {
return false;
}
shortestAdjacentCornerPathsComputed++;
}
}
OPENGM_ASSERT(shortestAdjacentCornerPathsComputed == 2);
// compute grid dimension
std::vector<size_t> dimension(2);
size_t dimensionIndex = 0;
for(size_t i = 1; i < 4; i++) {
if(i != diagonalCorner) {
dimension[dimensionIndex] = shortestPaths[i - 1].size();
dimensionIndex++;
}
}
OPENGM_ASSERT(dimensionIndex == 2);
//check dimensions
if(dimension[0] != shortestAdjacentCornerPaths[1].size()) {
return false;
}
if(dimension[1] != shortestAdjacentCornerPaths[0].size()) {
return false;
}
// create storage
gridIDs = marray::Matrix<size_t>(dimension[0], dimension[1]);
// fill outer values
// from first corner to adjacent corners
bool transpose = false;
for(size_t i = 1; i < 4; i++) {
if(i != diagonalCorner) {
size_t indexHelper = 0;
if(transpose == false) {
for(typename std::list<size_t>::iterator iter = shortestPaths[i - 1].begin(); iter != shortestPaths[i - 1].end(); iter++) {
gridIDs(indexHelper, 0) = *iter;
indexHelper++;
}
transpose = true;
} else {
for(typename std::list<size_t>::iterator iter = shortestPaths[i - 1].begin(); iter != shortestPaths[i - 1].end(); iter++) {
gridIDs(0, indexHelper) = *iter;
indexHelper++;
}
}
}
}
// from diagonal corner to adjacent corners
transpose = false;
for(size_t i = 0; i <= 1; i++) {
size_t indexHelper = 0;
if(transpose == false) {
for(typename std::list<size_t>::iterator iter = shortestAdjacentCornerPaths[i].begin(); iter != shortestAdjacentCornerPaths[i].end(); iter++) {
gridIDs(dimension[0] - 1, indexHelper) = *iter;
indexHelper++;
}
transpose = true;
} else {
for(typename std::list<size_t>::iterator iter = shortestAdjacentCornerPaths[i].begin(); iter != shortestAdjacentCornerPaths[i].end(); iter++) {
gridIDs(indexHelper, dimension[1] - 1) = *iter;
indexHelper++;
}
}
}
// fill inner values
for(size_t i = 1; i < dimension[0] - 1; i++) {
for(size_t j = 1; j < dimension[1] - 1; j++) {
std::vector<size_t> oneHopVariables;
if(twoHopConnected(gridIDs(i - 1, j), gridIDs(i, j - 1), oneHopVariables)) {
if(oneHopVariables.size() < 2) {
return false;
}
OPENGM_ASSERT(oneHopVariables.size() == 2);
if(oneHopVariables[0] != gridIDs(i - 1, j - 1)) {
gridIDs(i, j) = oneHopVariables[0];
} else {
gridIDs(i, j) = oneHopVariables[1];
}
} else {
return false;
}
}
}
return true;
}
/// \brief return maximum factor order
/// \return maximum factor order
template<class S,class I>
inline size_t
FactorGraph<S,I>::maxFactorOrder() const {
size_t maxFactorOrder = 0;
for(size_t i = 0; i < numberOfFactors(); i++) {
if(numberOfVariables(i) > maxFactorOrder) {
maxFactorOrder = numberOfVariables(i);
}
}
return maxFactorOrder;
}
/// \brief return true if the maximum factor order is less or equal to maxOrder
/// \param maxOrder maximum allowed factor order
/// \return result
template<class S,class I>
inline bool
FactorGraph<S,I>::maxFactorOrder(const size_t maxOrder) const {
for(size_t i = 0; i < numberOfFactors(); i++) {
if(numberOfVariables(i) > maxOrder) {
return false;
}
}
return true;
}
/// \brief return number of factors with order n which are connected to variable
/// \param variable variable index
/// \param n desired order of factors
/// \return result
template<class S,class I>
inline size_t
FactorGraph<S,I>::numberOfNthOrderFactorsOfVariable(const size_t variable, const size_t n) const {
OPENGM_ASSERT(variable < numberOfVariables());
size_t countNthOrderFactors = 0;
for(ConstFactorIterator iter = factorsOfVariableBegin(variable); iter != factorsOfVariableEnd(variable); iter++) {
if(numberOfVariables(*iter) == n) {
countNthOrderFactors++;
}
}
return countNthOrderFactors;
}
/// \brief return number of factors with order n which are connected to variable and stores the corresponding factorIDs
/// \param variable variable index
/// \param n desired order of factors
/// \param[out] factorIDs factorIDs of all n'th order factors connected to a given variable
/// \return result
template<class S,class I>
inline size_t
FactorGraph<S,I>::numberOfNthOrderFactorsOfVariable(const size_t variable, const size_t n, marray::Vector<size_t>& factorIDs) const {
OPENGM_ASSERT(variable < numberOfVariables());
// FIXME this might be done more efficiently without numberOfNthOrderFactorsOfVariable(variable, n) if marray::Vector<size_t> would support something like push_back()
size_t countNthOrderFactors = numberOfNthOrderFactorsOfVariable(variable, n);
factorIDs = marray::Vector<size_t>(countNthOrderFactors);
for(ConstFactorIterator iter = factorsOfVariableBegin(variable); iter != factorsOfVariableEnd(variable); iter++) {
if(numberOfVariables(*iter) == n) {
countNthOrderFactors--;
factorIDs[countNthOrderFactors] = *iter;
}
}
OPENGM_ASSERT(countNthOrderFactors == 0);
return factorIDs.size();
}
/// \brief return returns the id of the second variable which is connected to a given variable via a second order factor
/// \param variable variable index
/// \param factor factor index
/// \return result
template<class S,class I>
inline size_t
FactorGraph<S,I>::secondVariableOfSecondOrderFactor(const size_t variable, const size_t factor) const {
OPENGM_ASSERT(variable < numberOfVariables());
OPENGM_ASSERT(factor < numberOfFactors());
OPENGM_ASSERT(numberOfVariables(factor) == 2);
OPENGM_ASSERT(variableFactorConnection(variable, factor));
for(ConstVariableIterator iter = variablesOfFactorBegin(factor); iter != variablesOfFactorEnd(factor); iter++) {
if(*iter != variable) {
return *iter;
}
}
return variable;
}
/// \brief return true if a factor is connected to a factor
/// \param factor1 variable index
/// \param factor2 variable index
/// \return result
template<class S,class I>
inline bool
FactorGraph<S,I>::factorFactorConnection
(
const size_t factor1,
const size_t factor2
) const
{
OPENGM_ASSERT(factor1 < numberOfFactors());
OPENGM_ASSERT(factor2 < numberOfFactors());
if(factor1 != factor2) {
ConstVariableIterator it1 = variablesOfFactorBegin(factor1);
ConstVariableIterator it2 = variablesOfFactorBegin(factor2);
while(it1 != variablesOfFactorEnd(factor1) && it2 != variablesOfFactorEnd(factor2)) {
if(*it1 < *it2) {
++it1;
}
else if(*it1 == *it2) {
return true;
}
else {
++it2;
}
}
}
return false;
}
/// \brief outputs the factor graph as a variable adjacency matrix
/// \param out matrix
template<class S,class I>
inline void
FactorGraph<S,I>::variableAdjacencyMatrix
(
marray::Matrix<bool>& out
) const
{
out = marray::Matrix<bool>(numberOfVariables(), numberOfVariables(), false);
for(size_t factor=0; factor<numberOfFactors(); ++factor) {
for(size_t j=0; j<numberOfVariables(factor); ++j) {
for(size_t k=j+1; k<numberOfVariables(factor); ++k) {
const size_t variable1 = variableOfFactor(factor, j);
const size_t variable2 = variableOfFactor(factor, k);
out(variable1, variable2) = true;
out(variable2, variable1) = true;
}
}
}
}
/// \brief outputs the factor graph as variable adjacency lists
/// \param out variable adjacency lists (as a vector of RandomAccessSets)
template<class S,class I>
inline void
FactorGraph<S,I>::variableAdjacencyList
(
std::vector<RandomAccessSet<IndexType> >& out
) const
{
templatedVariableAdjacencyList(out);
}
/// \brief outputs the factor graph as variable adjacency lists
/// \param out variable adjacency lists (as a vector of sets)
template<class S,class I>
inline void
FactorGraph<S,I>::variableAdjacencyList
(
std::vector<std::set<IndexType> >& out
) const
{
templatedVariableAdjacencyList(out);
}
/// \brief outputs the factor graph as variable adjacency lists
/// \param out variable adjacency lists (e.g. std::vector<std::set<size_t> >)
template<class S,class I>
template<class LIST>
inline void
FactorGraph<S,I>::templatedVariableAdjacencyList
(
LIST& out
) const
{
out.clear();
out.resize(numberOfVariables());
for(size_t factor=0; factor<numberOfFactors(); ++factor) {
for(size_t j=0; j<numberOfVariables(factor); ++j) {
for(size_t k=j+1; k<numberOfVariables(factor); ++k) {
const size_t variable1 = variableOfFactor(factor, j);
const size_t variable2 = variableOfFactor(factor, k);
out[variable1].insert(variable2);
out[variable2].insert(variable1);
}
}
}
}
template<class S,class I>
inline void
FactorGraph<S,I>::factorAdjacencyList
(
std::vector<std::set<IndexType> >& out
) const
{
templatedFactorAdjacencyList(out);
}
template<class S,class I>
inline void
FactorGraph<S,I>::factorAdjacencyList
(
std::vector< RandomAccessSet<IndexType> >& out
) const
{
templatedFactorAdjacencyList(out);
}
template<class S,class I>
template<class LIST>
inline void
FactorGraph<S,I>::templatedFactorAdjacencyList
(
LIST& out
) const
{
out.clear();
out.resize(numberOfFactors());
for(size_t f=0; f<numberOfFactors(); ++f) {
for(size_t v=0 ;v<numberOfVariables(f); ++v) {
for(size_t ff=0;ff<numberOfFactors(v);++ff) {
const size_t fOfVar=factorOfVariable(v,ff);
if(f!=fOfVar) {
out[f].insert(fOfVar);
}
}
}
}
}
/// \brief computes the shortest path from s to t using Dijkstra's algorithm with uniform distances
/// \param s ID of the start variable
/// \param t ID of the target variable
/// \param[out] path returns computed path from s to t
/// \param allowedVariables path is only allowed to contain variables which are given here (if empty, all variables are allowed)
template<class S,class I>
template <class LIST>
inline bool
FactorGraph<S,I>::shortestPath(const size_t s, const size_t t, LIST& path, const LIST& allowedVariables) const {
OPENGM_ASSERT(s < numberOfVariables());
OPENGM_ASSERT(t < numberOfVariables());
OPENGM_ASSERT(allowedVariables.size() <= numberOfVariables());
OPENGM_ASSERT(numberOfVariables() != std::numeric_limits<size_t>::max());
const size_t infinity = std::numeric_limits<size_t>::max();
bool useAllVariables = (allowedVariables.size() == 0) || (allowedVariables.size() == numberOfVariables());
if(useAllVariables) {
std::vector<size_t> distances(numberOfVariables(), infinity);
std::vector<size_t> previous(numberOfVariables(), infinity);
distances[s] = 0;
LIST Q;
for(size_t i = 0; i < numberOfVariables(); i++) {
Q.push_back(i);
}
while(Q.size() !=0) {
typename LIST::iterator currentIter = Q.begin();
for(typename LIST::iterator iter = Q.begin(); iter != Q.end(); iter++) {
if(distances[*iter] < distances[*currentIter]) {
currentIter = iter;
}
}
if(distances[*currentIter] == infinity) {
// all remaining variables are inaccessible from s
return false;
}
if(*currentIter == t) {
// target found
break;
}
size_t currentID = *currentIter;
Q.erase(currentIter);
// iterate over all neighbor variables of *current which are still in Q
for(ConstFactorIterator factorIter = factorsOfVariableBegin(currentID); factorIter != factorsOfVariableEnd(currentID); factorIter++) {
for(ConstVariableIterator variableIter = variablesOfFactorBegin(*factorIter); variableIter != variablesOfFactorEnd(*factorIter); variableIter++) {
if(std::find(Q.begin(), Q.end(), *variableIter) != Q.end()) {
size_t newDistance = distances[currentID] + 1;
if(newDistance < distances[*variableIter]) {
distances[*variableIter] = newDistance;
previous[*variableIter] = currentID;
}
}
}
}
}
OPENGM_ASSERT(previous[t] != infinity);
// create path
size_t u = t;
while(previous[u] != infinity) {
path.push_front(u);
u = previous[u];
}
path.push_front(s);
return true;
} else {
OPENGM_ASSERT(std::find(allowedVariables.begin(), allowedVariables.end(), s) != allowedVariables.end());
OPENGM_ASSERT(std::find(allowedVariables.begin(), allowedVariables.end(), t) != allowedVariables.end());
std::vector<size_t> distances(allowedVariables.size(), infinity);
std::vector<size_t> previous(allowedVariables.size(), infinity);
std::map<size_t, size_t> local2actualIDs;
std::map<size_t, size_t> actual2localIDs;
LIST Q;
size_t counter = 0;
for(typename LIST::const_iterator iter = allowedVariables.begin(); iter != allowedVariables.end(); iter++) {
Q.push_back(counter);
local2actualIDs.insert(std::pair<size_t, size_t>(counter, *iter));
actual2localIDs.insert(std::pair<size_t, size_t>(*iter, counter));
counter++;
}
distances[actual2localIDs.find(s)->second] = 0;
while(Q.size() !=0) {
typename LIST::iterator currentIter = Q.begin();
for(typename LIST::iterator iter = Q.begin(); iter != Q.end(); iter++) {
if(distances[*iter] < distances[*currentIter]) {
currentIter = iter;
}
}
if(distances[*currentIter] == infinity) {
// all remaining variables are inaccessible from s
return false;
}
// get actual ID
size_t actualID = local2actualIDs.find(*currentIter)->second;
if(actualID == t) {
// target found
break;
}
size_t currentLocalID = *currentIter;
Q.erase(currentIter);
// iterate over all neighbor variables of *current which are in allowedVariables and are still in Q
for(ConstFactorIterator factorIter = factorsOfVariableBegin(actualID); factorIter != factorsOfVariableEnd(actualID); factorIter++) {
for(ConstVariableIterator variableIter = variablesOfFactorBegin(*factorIter); variableIter != variablesOfFactorEnd(*factorIter); variableIter++) {
const std::map<size_t, size_t>::const_iterator actual2localIDsCurrentPosition = actual2localIDs.find(*variableIter);
if(actual2localIDsCurrentPosition != actual2localIDs.end()) {
size_t localID = actual2localIDsCurrentPosition->second;
if(std::find(Q.begin(), Q.end(), localID) != Q.end()) {
size_t newDistance = distances[currentLocalID] + 1;
if(newDistance < distances[localID]) {
distances[localID] = newDistance;
previous[localID] = currentLocalID;
}
}
}
}
}
}
OPENGM_ASSERT(actual2localIDs.find(t)->second != infinity);
// create path
size_t u = actual2localIDs.find(t)->second;
while(previous[u] != infinity) {
path.push_front(local2actualIDs.find(u)->second);
u = previous[u];
}
path.push_front(s);
return true;
}
return false;
}
/// \brief checks if variabel1 is connected to variable2 via two hops
/// \param variable1 ID of the first variable
/// \param variable2 ID of the second variable
/// \param[out] oneHopVariables a List of all possible one hop variables in the two hop path from variable1 to variable2
template<class S,class I>
template <class LIST>
inline bool
FactorGraph<S,I>::twoHopConnected(const size_t variable1, const size_t variable2, LIST& oneHopVariables) const {
OPENGM_ASSERT(variable1 < numberOfVariables());
OPENGM_ASSERT(variable2 < numberOfVariables());
oneHopVariables.clear();
if(variable1 != variable2) {
for(ConstFactorIterator factorIter = factorsOfVariableBegin(variable1); factorIter != factorsOfVariableEnd(variable1); factorIter++) {
for(ConstVariableIterator variableIter = variablesOfFactorBegin(*factorIter); variableIter != variablesOfFactorEnd(*factorIter); variableIter++) {
if((*variableIter != variable1) || (*variableIter != variable2)) {
if(variableVariableConnection(*variableIter, variable2)) {
oneHopVariables.push_back(*variableIter);
}
}
}
}
}
if(oneHopVariables.size() == 0) {
return false;
} else {
return true;
}
}
} // namespace opengm
#endif // #ifndef OPENGM_FACTORGRAPH_HXX
|