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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 | Metadata-Version: 1.0
Name: mapdamage
Version: 2.0.8
Summary: mapDamage tracks and quantify DNA damage pattern among ancient DNA sequencing reads generated by Next-Generation Sequencing platforms
Home-page: https://github.com/ginolhac/mapDamage
Author: Aurélien Ginolhac, Mikkel Schubert, Hákon Jónsson
Author-email: MSchubert@snm.ku.dk, jonsson.hakon@gmail.com
License: LICENSE.txt
Description: ### Important
Users with versions dating prior to June 12 2013 please update. A nasty bug that caused the statistical part of mapDamage to use half of the data for estimation of the damage parameters, sorry for the inconvenience.
### Introduction
Complete documentation, instructions, examples, screenshots and FAQ are available at [this address](http://ginolhac.github.io/mapDamage/).
[mapDamage2](http://geogenetics.ku.dk/publications/mapdamage2.0/) is a computational framework written in Python and R, which tracks and quantifies DNA damage patterns
among ancient DNA sequencing reads generated by Next-Generation Sequencing platforms.
Mapdamage is developed at the [Centre for GeoGenetics](http://geogenetics.ku.dk/) by the [Orlando Group ](http://geogenetics.ku.dk/research/research_groups/palaeomix_group/).
### Web interface
Anna Kostikova from [insideDNA](https://insidedna.me) implemented a web interface for mapDamage.
Users can adjust the cloud ressources in terms of RAM/CPU to perform their analysis. She wrote a [tutorial](https://insidedna.me/tutorials/view/Analysis-ancient-DNA-samples-using-mapDamage) explaining how to use this [web interface (sign up required)](https://insidedna.me/app#/tools/100648/)
### Citation
If you use this program, please cite the following publication:
Jónsson H, Ginolhac A, Schubert M, Johnson P, Orlando L.
[mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters.
_Bioinformatics_ 23rd April 2013. doi: 10.1093/bioinformatics/btt193](http://bioinformatics.oxfordjournals.org/content/early/2013/05/17/bioinformatics.btt193)
The original mapDamage1 is described in the following article:
Ginolhac A, Rasmussen M, Gilbert MT, Willerslev E, Orlando L.
[mapDamage: testing for damage patterns in ancient DNA sequences. _Bioinformatics_ 2011 **27**(15):2153-5
http://bioinformatics.oxfordjournals.org/content/27/15/2153](http://bioinformatics.oxfordjournals.org/content/27/15/2153)
### Contact
Please report bugs and suggest possible improvements to Aurélien Ginolhac, Mikkel Schubert or Hákon Jónsson by email:
aginolhac at snm.ku.dk, MSchubert at snm.ku.dk or jonsson.hakon at gmail.com.
Platform: UNKNOWN
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