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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 | # MHAP
MinHash alignment process (MHAP pronounced MAP): locality sensitive hashing to detect overlaps and utilities. This is the development branch, please use the [latest tagged](https://github.com/marbl/MHAP/releases/tag/v2.1.1).
## Build
You must have a recent [JDK](http://www.oracle.com/technetwork/java/javase/downloads/index.html "JDK") and [Apache Maven](http://maven.apache.org/ "MAVEN") available. To checkout and build run:
git clone https://github.com/marbl/MHAP.git
cd MHAP
maven install
For a quick user-quide, run:
cd target
java -jar mhap-2.1.1.jar
## Docs
For the full documentation information please see http://mhap.readthedocs.io/en/latest/
## Cite
- Berlin K, Koren S, Chin CS, Drake PJ, Landolin JM, Phillippy AM [Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing](http://www.nature.com/nbt/journal/v33/n6/abs/nbt.3238.html "nb"). Nature Biotechnology. (2015).
## License
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.
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