/etc/mobyle/programs/Entities/hmmer_package.xml is in mobyle-programs 5.1.2-2.
This file is owned by root:root, with mode 0o644.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 | <package>
<name>hmmer</name>
<version>3.0</version>
<doc>
<title>hmmer</title>
<description>
<text lang="en">HMMER is an implementation of profile HMM methods for sensitive
database searches using multiple sequence alignments as queries.</text>
</description>
<homepagelink>http://hmmer.janelia.org/</homepagelink>
<sourcelink>ftp://selab.janelia.org/pub/software/hmmer3/</sourcelink>
<authors>S. Eddy</authors>
<reference>Eddy, S. R. (1998). Profile hidden Markov models. Bioinformatics, 14:755-763.</reference>
<reference>Eddy, S. R. (2008). A probabilistic model of local sequence alignment that simplifies statistical significance
estimation. PLoS Comput. Biol., 4:e1000069</reference>
<doclink>http://bioweb2.pasteur.fr/docs/hmmer/Userguide.pdf</doclink>
</doc>
</package>
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