/usr/share/msxpertsuite/massxpert/polSeqs/protein-1-letter.mxp is in msxpertsuite-data 4.1.0-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 | <?xml version="1.0"?>
<!-- DTD for polymer sequences, used by the
'massXpert' mass spectrometry application.
Copyright 2006,2007,2008 Filippo Rusconi - Licensed under the GNU GPL -->
<!DOCTYPE polseqdata [
<!ELEMENT polseqdata (polchemdef_name,name,code,author,datetime,polseq,le_modif,re_modif,crosslinks,prop*)>
<!ATTLIST polseqdata version NMTOKEN #REQUIRED>
<!ELEMENT polchemdef_name (#PCDATA)>
<!ELEMENT mdf (name,formula,targets)>
<!ELEMENT name (#PCDATA)>
<!ELEMENT formula (#PCDATA)>
<!ELEMENT targets (#PCDATA)>
<!ELEMENT code (#PCDATA)>
<!ELEMENT author (#PCDATA)>
<!ELEMENT datetime (#PCDATA)>
<!ELEMENT polseq (codes|monomer)*>
<!ELEMENT le_modif (mdf?)>
<!ELEMENT re_modif (mdf?)>
<!ELEMENT codes (#PCDATA)>
<!ELEMENT crosslink (name,targets)>
<!ELEMENT crosslinks (crosslink*)>
<!ELEMENT monomer (code, mdf*)>
<!ELEMENT prop (name, data+)>
<!ATTLIST data type (str | int | dbl) "str">
<!ELEMENT data (#PCDATA)>
]>
<polseqdata version="5">
<polchemdef_name>protein-1-letter</polchemdef_name>
<name>Protein Sample Polymer Sequence</name>
<code>SP2003</code>
<author>rusconi</author>
<datetime>2011-07-25:21:01</datetime>
<polseq>
<codes>MEFEEDFSGRKDKNFLKMGRKSKKEKKEKKPVVSVFTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLVFGDMTDSFASVGNIPTNATNNATQVNASDIFGKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELQAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFAVLIAPFSIGQASPNIEAFANARGAAYEIFNIIDNKPSIDSFSKNGYKPDNIKGNLEFKNIHFSYPSRKDVQILKGLNLKVQSGQTVALVGNSGCGKSTTVQLLQRLYDPTEGVVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGRENVTMDEIEKAVKEANAYDFIMKLPHKFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADIIAGFDGGVIVEQGNHEELMREKGIYFKLVMTQTAGNEIELGNEVGESKNEIDNLDMSSKDSASSLIRRRSTRRSIRGPHDQDRKLSTKEALDEDVPPISFWRILKLNSSEWPYFVVGIFCAIVNGALQPAFSIIFSKVVGVFTRNTDDETKRHDSNLFSLLFLILGVISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDNPKNTTGALTTRLANDAGQVKGATGARLAVITQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFENMYAQSLQIPYRNALKKAHVFGITFSFTQAMMYFSYAACFRFGAYLVARELMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKAKVSASHIIMIIEKVPSIDSYSTGGLKPNTLEGNVKFNEVVFNYPTRPDIPVLQGLNLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGTVFLDGKEVNQLNVQWLRAHLGIVSQEPILFDCSIAENIAYGDNSRVVSQDEIERAAKEANIHQFIESLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQAGAKR</codes>
</polseq>
<le_modif>
<mdf>
<name>Acetylation</name>
<formula>-H+C2H3O</formula>
<targets>;K;</targets>
<maxcount>1</maxcount>
</mdf>
</le_modif>
<re_modif>
<mdf>
<name>Phosphorylation</name>
<formula>-H+H2PO3</formula>
<targets>;S;T;Y;</targets>
<maxcount>1</maxcount>
</mdf>
</re_modif>
<crosslinks>
</crosslinks>
</polseqdata>
|