/usr/share/predictprotein/predictproteinrc.default is in predictprotein 1.1.07-3.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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# predictprotein_utildir=path - path to package utilities, default: /usr/share/predictprotein
predictprotein_utildir=/usr/share/predictprotein
# librg_utils_perl=path - path to librg-utils-perl utilities, default: /usr/share/librg-utils-perl
librg_utils_perl=/usr/share/librg-utils-perl
# use/do not use result cache
use_cache=0
# bigblastdb: Path to comprehensive blast database
bigblastdb=/mnt/project/rost_db/data/blast/big
# big80blastdb: Path to comprehensive blast database at 80% sequence identity redundancy level
big80blastdb=/mnt/project/rost_db/data/blast/big_80
# path to profphd
prof=/usr/share/profphd/prof/
# prof numresMin, default: 17
profnumresmin=17
# maximum length of input AA sequence, default: 6000
numresmax=6000
# prositedat: Path to `prosite.dat' file, see L<https://rostlab.org/owiki/index.php/Packages#Resource_definitions>
prositedat=/mnt/project/rost_db/data/prosite/prosite.dat
# prositeconvdat: Path to `prosite_convert.dat' file, see L<https://rostlab.org/owiki/index.php/Packages#Resource_definitions>
prositeconvdat=/mnt/project/rost_db/data/prosite/prosite_convert.dat
# swissblastdb: Path to SwissProt blast database
swissblastdb=/mnt/project/rost_db/data/blast/swiss
# psicexe: psic wrapper executable
psicexe=/usr/share/rost-runpsic/runNewPSIC.pl
# pfam2 db
pfam2db=/mnt/project/rost_db/data/pfam/Pfam_ls
# pfam3 db
pfam3db=/mnt/project/rost_db/data/pfam/Pfam-A.hmm
# Swiss-Prot key 'index' (e.g.) for loctree
spkeyidx=/mnt/project/rost_db/data/swissprot/keyindex_loctree.txt
# default_targets: targets to make if none is given on the command line (separate targets with space)
default_targets=all
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