/usr/lib/python2.7/dist-packages/gwcs/wcs.py is in python-gwcs 0.7-2.
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from __future__ import absolute_import, division, unicode_literals, print_function
import functools
import numpy as np
from astropy.extern import six
from astropy.modeling.core import Model
from . import coordinate_frames
from .utils import CoordinateFrameError
from .utils import _toindex
from . import utils
__all__ = ['WCS']
class WCS(object):
"""
Basic WCS class.
Parameters
----------
forward_transform : `~astropy.modeling.Model` or a list
The transform between ``input_frame`` and ``output_frame``.
A list of (frame, transform) tuples where ``frame`` is the starting frame and
``transform`` is the transform from this frame to the next one or ``output_frame``.
The last tuple is (transform, None), where None indicates the end of the pipeline.
input_frame : str, `~gwcs.coordinate_frames.CoordinateFrame`
A coordinates object or a string name.
output_frame : str, `~gwcs.coordinate_frames.CoordinateFrame`
A coordinates object or a string name.
name : str
a name for this WCS
"""
def __init__(self, forward_transform=None, input_frame='detector', output_frame=None,
name=""):
self._available_frames = []
self._pipeline = []
self._name = name
self._initialize_wcs(forward_transform, input_frame, output_frame)
def _initialize_wcs(self, forward_transform, input_frame, output_frame):
if forward_transform is not None:
if isinstance(forward_transform, Model):
if output_frame is None:
raise CoordinateFrameError("An output_frame must be specified"
"if forward_transform is a model.")
_input_frame, inp_frame_obj = self._get_frame_name(input_frame)
_output_frame, outp_frame_obj = self._get_frame_name(output_frame)
super(WCS, self).__setattr__(_input_frame, inp_frame_obj)
super(WCS, self).__setattr__(_output_frame, outp_frame_obj)
self._pipeline = [(_input_frame, forward_transform.copy()),
(_output_frame, None)]
elif isinstance(forward_transform, list):
for item in forward_transform:
name, frame_obj = self._get_frame_name(item[0])
super(WCS, self).__setattr__(name, frame_obj)
self._pipeline.append((name, item[1]))
else:
raise TypeError("Expected forward_transform to be a model or a "
"(frame, transform) list, got {0}".format(
type(forward_transform)))
else:
# Initialize a WCS without a forward_transform - allows building a WCS programmatically.
if output_frame is None:
raise CoordinateFrameError("An output_frame must be specified"
"if forward_transform is None.")
_input_frame, inp_frame_obj = self._get_frame_name(input_frame)
_output_frame, outp_frame_obj = self._get_frame_name(output_frame)
super(WCS, self).__setattr__(_input_frame, inp_frame_obj)
super(WCS, self).__setattr__(_output_frame, outp_frame_obj)
self._pipeline = [(_input_frame, None),
(_output_frame, None)]
def get_transform(self, from_frame, to_frame):
"""
Return a transform between two coordinate frames.
Parameters
----------
from_frame : str or `~gwcs.coordinate_frame.CoordinateFrame`
Initial coordinate frame name of object.
to_frame : str, or instance of `~gwcs.cordinate_frames.CoordinateFrame`
End coordinate frame name or object.
Returns
-------
transform : `~astropy.modeling.Model`
Transform between two frames.
"""
if not self._pipeline:
return None
try:
from_ind = self._get_frame_index(from_frame)
except ValueError:
raise CoordinateFrameError("Frame {0} is not in the available frames".format(from_frame))
try:
to_ind = self._get_frame_index(to_frame)
except ValueError:
raise CoordinateFrameError("Frame {0} is not in the available frames".format(to_frame))
if to_ind < from_ind:
transforms = np.array(self._pipeline[to_ind: from_ind])[:, 1].tolist()
transforms = [tr.inverse for tr in transforms[::-1]]
elif to_ind == from_ind:
return None
else:
transforms = np.array(self._pipeline[from_ind: to_ind])[:, 1].copy()
return functools.reduce(lambda x, y: x | y, transforms)
def set_transform(self, from_frame, to_frame, transform):
"""
Set/replace the transform between two coordinate frames.
Parameters
----------
from_frame : str or `~gwcs.coordinate_frame.CoordinateFrame`
Initial coordinate frame.
to_frame : str, or instance of `~gwcs.cordinate_frames.CoordinateFrame`
End coordinate frame.
transform : `~astropy.modeling.Model`
Transform between ``from_frame`` and ``to_frame``.
"""
from_name, from_obj = self._get_frame_name(from_frame)
to_name, to_obj = self._get_frame_name(to_frame)
if not self._pipeline:
if from_name != self._input_frame:
raise CoordinateFrameError(
"Expected 'from_frame' to be {0}".format(self._input_frame))
if to_frame != self._output_frame:
raise CoordinateFrameError(
"Expected 'to_frame' to be {0}".format(self._output_frame))
try:
from_ind = self._get_frame_index(from_name)
except ValueError:
raise CoordinateFrameError("Frame {0} is not in the available frames".format(from_name))
try:
to_ind = self._get_frame_index(to_name)
except ValueError:
raise CoordinateFrameError("Frame {0} is not in the available frames".format(to_name))
if from_ind + 1 != to_ind:
raise ValueError("Frames {0} and {1} are not in sequence".format(from_name, to_name))
self._pipeline[from_ind] = (self._pipeline[from_ind][0], transform)
@property
def forward_transform(self):
"""
Return the total forward transform - from input to output coordinate frame.
"""
if self._pipeline:
return functools.reduce(lambda x, y: x | y, [step[1] for step in self._pipeline[: -1]])
else:
return None
@property
def backward_transform(self):
"""
Return the total backward transform if available - from output to input coordinate system.
Raises
------
NotImplementedError :
An analytical inverse does not exist.
"""
try:
backward = self.forward_transform.inverse
except NotImplementedError as err:
raise NotImplementedError("Could not construct backward transform. \n{0}".format(err))
return backward
def _get_frame_index(self, frame):
"""
Return the index in the pipeline where this frame is locate.
"""
if isinstance(frame, coordinate_frames.CoordinateFrame):
frame = frame.name
return np.asarray(self._pipeline)[:, 0].tolist().index(frame)
def _get_frame_name(self, frame):
"""
Return the name of the frame and a ``CoordinateFrame`` object.
Parameters
----------
frame : str, `~gwcs.coordinate_frames.CoordinateFrame`
Coordinate frame.
Returns
-------
name : str
The name of the frame
frame_obj : `~gwcs.coordinate_frames.CoordinateFrame`
Frame instance or None (if `frame` is str)
"""
if isinstance(frame, six.string_types):
name = frame
frame_obj = None
else:
name = frame.name
frame_obj = frame
return name, frame_obj
def __call__(self, *args, **kwargs):
"""
Executes the forward transform.
args : float or array-like
Inputs in the input coordinate system, separate inputs for each dimension.
output : str
One of ["numericals", "numericals_plus"]
If "numericals_plus" - returns a `~astropy.coordinates.SkyCoord` or
`~astropy.units.Quantity` object.
"""
if self.forward_transform is None:
raise NotImplementedError("WCS.forward_transform is not implemented.")
result = self.forward_transform(*args)
output = kwargs.pop('output', None)
if output == 'numericals_plus':
if self.output_frame.naxes == 1:
result = self.output_frame.coordinates(result)
else:
result = self.output_frame.coordinates(*result)
elif output is not None and output != "numericals":
raise ValueError("Type of output unrecognized {0}".format(output))
return result
def invert(self, *args, **kwargs):
"""
Invert coordnates.
The analytical inverse of the forward transform is used, if available.
If not an iterative method is used.
Parameters
----------
args : float, array like, `~astropy.coordinates.SkyCoord` or `~astropy.units.Unit`
coordinates to be inverted
kwargs : dict
keyword arguments to be passed to the iterative invert method.
"""
if not utils.isnumerical(args[0]):
args = utils._get_values(self.unit, *args)
try:
result = self.backward_transform(*args)
except (NotImplementedError, KeyError):
result = self._invert(*args, **kwargs)
output = kwargs.pop('output', None)
if output == 'numericals_plus':
if self.input_frame.naxes == 1:
return self.input_frame.coordinates(result)
else:
return self.input_frame.coordinates(*result)
else:
return result
def _invert(self, *args, **kwargs):
"""
Implement iterative inverse here.
"""
raise NotImplementedError
def transform(self, from_frame, to_frame, *args, **kwargs):
"""
Transform positions between two frames.
Parameters
----------
from_frame : str or `~gwcs.coordinate_frames.CoordinateFrame`
Initial coordinate frame.
to_frame : str, or instance of `~gwcs.cordinate_frames.CoordinateFrame`
Coordinate frame into which to transform.
args : float
input coordinates to transform
args : float or array-like
Inputs in ``from_frame``, separate inputs for each dimension.
output : str
One of ["numericals", "numericals_plus"]
If "numericals_plus" - returns a `~astropy.coordinates.SkyCoord` or
`~astropy.units.Quantity` object.
"""
transform = self.get_transform(from_frame, to_frame)
if not utils.isnumerical(args[0]):
args = utils._get_values(self.unit, *args)
result = transform(*args)
output = kwargs.pop("output", None)
if output == "numericals_plus":
to_frame_name, to_frame_obj = self._get_frame_name(to_frame)
if to_frame_obj is not None:
if to_frame_obj.naxes == 1:
result = to_frame_obj.coordinates(result)
else:
result = to_frame_obj.coordinates(*result)
else:
raise TypeError("Coordinate objects could not be created because"
"frame {0} is not defined.".format(to_frame_name))
elif output is not None and output != "numericals":
raise ValueError("Type of output unrecognized {0}".format(output))
return result
@property
def available_frames(self):
"""
List all frames in this WCS object.
Returns
-------
available_frames : dict
{frame_name: frame_object or None}
"""
if self._pipeline:
return [frame[0] for frame in self._pipeline]
else:
return None
def insert_transform(self, frame, transform, after=False):
"""
Insert a transform before (default) or after a coordinate frame.
Append (or prepend) a transform to the transform connected to frame.
Parameters
----------
frame : str or `~gwcs.coordinate_frame.CoordinateFrame`
Coordinate frame which sets the point of insertion.
transform : `~astropy.modeling.Model`
New transform to be inserted in the pipeline
after : bool
If True, the new transform is inserted in the pipeline
immediately after `frame`.
"""
name, _ = self._get_frame_name(frame)
frame_ind = self._get_frame_index(name)
if not after:
fr, current_transform = self._pipeline[frame_ind - 1]
self._pipeline[frame_ind - 1] = (fr, current_transform | transform)
else:
fr, current_transform = self._pipeline[frame_ind]
self._pipeline[frame_ind] = (fr, transform | current_transform)
@property
def unit(self):
"""The unit of the coordinates in the output coordinate system."""
if self._pipeline:
try:
return getattr(self, self._pipeline[-1][0]).unit
except AttributeError:
return None
else:
return None
@property
def output_frame(self):
"""Return the output coordinate frame."""
if self._pipeline:
return getattr(self, self._pipeline[-1][0])
else:
return None
@property
def input_frame(self):
"""Return the input coordinate frame."""
if self._pipeline:
return getattr(self, self._pipeline[0][0])
else:
return None
@property
def name(self):
"""Return the name for this WCS."""
return self._name
@name.setter
def name(self, value):
"""Set the name for the WCS."""
self._name = value
@property
def pipeline(self):
"""Return the pipeline structure."""
return self._pipeline
@property
def domain(self):
"""
Return the range of acceptable values for each input axis.
"""
frames = self.available_frames
transform_meta = self.get_transform(frames[0], frames[1]).meta
if 'domain' in transform_meta:
return transform_meta['domain']
else:
return None
@domain.setter
def domain(self, value):
"""
Set the range of acceptable values for each input axis.
"""
self._validate_domain(value)
frames = self.available_frames
transform = self.get_transform(frames[0], frames[1])
transform.meta['domain'] = value
self.set_transform(frames[0], frames[1], transform)
def _validate_domain(self, domain):
n_inputs = self.forward_transform.n_inputs
if len(domain) != n_inputs:
raise ValueError("The number of domains should match the number "
"of inputs {0}".format(n_inputs))
if not isinstance(domain, (list, tuple)) or \
not all([isinstance(d, dict) for d in domain]):
raise TypeError('"domain" should be a list of dictionaries for each axis in the input_frame'
"[{'lower': low_x, "
"'upper': high_x, "
"'includes_lower': bool, "
"'includes_upper': bool}]")
def __str__(self):
from astropy.table import Table
col1 = [item[0] for item in self._pipeline]
col2 = []
for item in self._pipeline[: -1]:
model = item[1]
if model.name is not None:
col2.append(model.name)
else:
col2.append(model.__class__.__name__)
col2.append(None)
t = Table([col1, col2], names=['From', 'Transform'])
return str(t)
def __repr__(self):
fmt = "<WCS(output_frame={0}, input_frame={1}, forward_transform={2})>".format(
self.output_frame, self.input_frame, self.forward_transform)
return fmt
def footprint(self, domain=None, center=True):
"""
Return the footprint of the observation in world coordinates.
Parameters
----------
domain : slice or tuple of floats: (start, stop, step) or (start, stop) or (stop,)
size of image
center : bool
If `True` use the center of the pixel, otherwise use the corner.
Returns
-------
coord : (4, 2) array of (*x*, *y*) coordinates.
The order is counter-clockwise starting with the bottom left corner.
"""
if domain is None:
if self.domain is None:
raise TypeError("Need a valid domain to compute the footprint.")
domain = self.domain
self._validate_domain(domain)
bounds = utils._domain_to_bounds(domain)
vertices = np.asarray([[bounds[0][0], bounds[1][0]], [bounds[0][0], bounds[1][1]],
[bounds[0][1], bounds[1][1]], [bounds[0][1], bounds[1][0]]])
vertices = _toindex(vertices).T
if not center:
vertices += .5
result = self.__call__(*vertices)
return np.asarray(result)
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