/usr/lib/python3/dist-packages/bioblend/galaxy/datatypes/__init__.py is in python3-bioblend 0.7.0-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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Contains possible interactions with the Galaxy Datatype
"""
from bioblend.galaxy.client import Client
class DatatypesClient(Client):
def __init__(self, galaxy_instance):
self.module = 'datatypes'
super(DatatypesClient, self).__init__(galaxy_instance)
def get_datatypes(self, extension_only=False, upload_only=False):
"""
Get the list of all installed datatypes.
:rtype: list
:return: A list of datatype names.
For example::
[u'snpmatrix',
u'snptest',
u'tabular',
u'taxonomy',
u'twobit',
u'txt',
u'vcf',
u'wig',
u'xgmml',
u'xml']
"""
params = {}
if extension_only:
params['extension_only'] = True
if upload_only:
params['upload_only'] = True
return Client._get(self, params=params)
def get_sniffers(self):
"""
Get the list of all installed sniffers.
:rtype: list
:return: A list of sniffer names.
For example::
[u'galaxy.datatypes.tabular:Vcf',
u'galaxy.datatypes.binary:TwoBit',
u'galaxy.datatypes.binary:Bam',
u'galaxy.datatypes.binary:Sff',
u'galaxy.datatypes.xml:Phyloxml',
u'galaxy.datatypes.xml:GenericXml',
u'galaxy.datatypes.sequence:Maf',
u'galaxy.datatypes.sequence:Lav',
u'galaxy.datatypes.sequence:csFasta']
"""
url = self.gi._make_url(self)
url = '/'.join([url, "sniffers"])
return Client._get(self, url=url)
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