/usr/lib/python3/dist-packages/bioblend/galaxy/visual/__init__.py is in python3-bioblend 0.7.0-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 | """
Contains possible interactions with the Galaxy visualization
"""
from bioblend.galaxy.client import Client
class VisualClient(Client):
def __init__(self, galaxy_instance):
self.module = 'visualizations'
super(VisualClient, self).__init__(galaxy_instance)
def get_visualizations(self):
"""
Get the list of all visualizations.
:rtype: list
:return: A list of dicts with details on individual visualizations.
For example::
[{u'dbkey': u'eschColi_K12',
u'id': u'df1c7c96fc427c2d',
u'title': u'AVTest1',
u'type': u'trackster',
u'url': u'/api/visualizations/df1c7c96fc427c2d'},
{u'dbkey': u'mm9',
u'id': u'a669f50f8bf55b02',
u'title': u'Bam to Bigwig',
u'type': u'trackster',
u'url': u'/api/visualizations/a669f50f8bf55b02'}]
"""
results = Client._get(self)
return results
def show_visualization(self, visual_id):
"""
Get details of a given visualization.
:type visual_id: str
:param visual_id: Encoded visualization ID
:rtype: dict
:return: A description of the given visualization.
For example::
{u'annotation': None,
u'dbkey': u'mm9',
u'id': u'18df9134ea75e49c',
u'latest_revision': { ... },
u'model_class': u'Visualization',
u'revisions': [u'aa90649bb3ec7dcb', u'20622bc6249c0c71'],
u'slug': u'visualization-for-grant-1',
u'title': u'Visualization For Grant',
u'type': u'trackster',
u'url': u'/u/azaron/v/visualization-for-grant-1',
u'user_id': u'21e4aed91386ca8b'}
"""
return Client._get(self, id=visual_id)
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