This file is indexed.

/usr/lib/R/site-library/AnnotationFilter/help/AnIndex is in r-bioc-annotationfilter 1.2.0-1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

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.GRangesFilter	AnnotationFilter
AnnotationFilter	AnnotationFilter
AnnotationFilter-class	AnnotationFilter
AnnotationFilterList	AnnotationFilterList
AnnotationFilterList-class	AnnotationFilterList
CdsEndFilter	AnnotationFilter
CdsEndFilter-class	AnnotationFilter
CdsStartFilter	AnnotationFilter
CdsStartFilter-class	AnnotationFilter
CharacterFilter-class	AnnotationFilter
condition	AnnotationFilter
condition,AnnotationFilter-method	AnnotationFilter
convertFilter	AnnotationFilterList
convertFilter,AnnotationFilter,missing-method	AnnotationFilter
convertFilter,AnnotationFilterList,missing-method	AnnotationFilterList
distributeNegation	AnnotationFilterList
distributeNegation,AnnotationFilterList-method	AnnotationFilterList
EntrezFilter	AnnotationFilter
EntrezFilter-class	AnnotationFilter
ExonEndFilter	AnnotationFilter
ExonEndFilter-class	AnnotationFilter
ExonIdFilter	AnnotationFilter
ExonIdFilter-class	AnnotationFilter
ExonNameFilter	AnnotationFilter
ExonNameFilter-class	AnnotationFilter
ExonRankFilter	AnnotationFilter
ExonRankFilter-class	AnnotationFilter
ExonStartFilter	AnnotationFilter
ExonStartFilter-class	AnnotationFilter
feature	AnnotationFilter
field	AnnotationFilter
field,AnnotationFilter-method	AnnotationFilter
GeneBiotypeFilter	AnnotationFilter
GeneBiotypeFilter-class	AnnotationFilter
GeneEndFilter	AnnotationFilter
GeneEndFilter-class	AnnotationFilter
GeneIdFilter	AnnotationFilter
GeneIdFilter-class	AnnotationFilter
GenenameFilter	AnnotationFilter
GenenameFilter-class	AnnotationFilter
GeneStartFilter	AnnotationFilter
GeneStartFilter-class	AnnotationFilter
GRangesFilter	AnnotationFilter
GRangesFilter-class	AnnotationFilter
IntegerFilter-class	AnnotationFilter
logicOp	AnnotationFilterList
logicOp,AnnotationFilterList-method	AnnotationFilterList
not	AnnotationFilterList
not,AnnotationFilter-method	AnnotationFilter
not,AnnotationFilterList-method	AnnotationFilterList
ProteinIdFilter	AnnotationFilter
ProteinIdFilter-class	AnnotationFilter
SeqNameFilter	AnnotationFilter
SeqNameFilter-class	AnnotationFilter
SeqStrandFilter	AnnotationFilter
SeqStrandFilter-class	AnnotationFilter
show,AnnotationFilter-method	AnnotationFilter
show,AnnotationFilterList-method	AnnotationFilterList
show,CharacterFilter-method	AnnotationFilter
show,GRangesFilter-method	AnnotationFilter
show,IntegerFilter-method	AnnotationFilter
supportedFilters	AnnotationFilter
supportedFilters,missing-method	AnnotationFilter
SymbolFilter	AnnotationFilter
SymbolFilter-class	AnnotationFilter
TxBiotypeFilter	AnnotationFilter
TxBiotypeFilter-class	AnnotationFilter
TxEndFilter	AnnotationFilter
TxEndFilter-class	AnnotationFilter
TxIdFilter	AnnotationFilter
TxIdFilter-class	AnnotationFilter
TxNameFilter	AnnotationFilter
TxNameFilter-class	AnnotationFilter
TxStartFilter	AnnotationFilter
TxStartFilter-class	AnnotationFilter
UniprotFilter	AnnotationFilter
UniprotFilter-class	AnnotationFilter
value	AnnotationFilter
value,AnnotationFilter-method	AnnotationFilter
value,AnnotationFilterList-method	AnnotationFilterList