This file is indexed.

/usr/lib/R/site-library/AnnotationHub/NAMESPACE is in r-bioc-annotationhub 2.10.1-1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

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import(methods)
import(BiocGenerics)
import(RSQLite)
import(S4Vectors)

importFrom(stats, setNames)
importFrom(grDevices, rgb)
importFrom(utils, packageVersion, read.csv, read.delim, unzip, 
    capture.output, read.table, .DollarNames
)
importFrom(httr, 
    GET, content, parse_url, progress, write_disk,
    stop_for_status, status_code, use_proxy
)
importFrom(yaml, yaml.load)
importFrom(interactiveDisplayBase, display)
importFrom(BiocInstaller, biocVersion, isDevel)

importMethodsFrom(AnnotationDbi, dbconn, dbfile)

### - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
### Export S4 classes
###

exportClasses(
    Hub, 
    AnnotationHub, AnnotationHubResource
)

export(readMetadataFromCsv)
### - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
### Export S4 methods for generics not defined in AnnotationHub 
###

exportMethods(
    names, length, "$", "[", subset, "[[", as.list, c,
    show, fileName, display, mcols, dbconn, dbfile
)

### - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
### Export S4 generics defined in AnnotationHub + export corresponding
### methods
###

export(
    cache, "cache<-", query,
    hubUrl, hubCache, hubDate,
    snapshotDate, "snapshotDate<-",
    getHub, listResources, loadResources,
    package
)

exportMethods(
    cache, "cache<-", query,
    hubUrl, hubCache, hubDate, 
    snapshotDate, "snapshotDate<-",
    getHub
)

### - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
### Export non-generic functions
###

export(
    .Hub, AnnotationHub, display, 
    removeCache,
    getAnnotationHubOption, setAnnotationHubOption, 
    possibleDates, mcols,
    .httr_proxy, .hub_option_key, .db_close,
    recordStatus
)

### - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
### Export S3 methods
###

S3method(.DollarNames, Hub)

S3method(as.list, Hub)

### Also export them thru the export() directive so that (a) they can be
### called directly, (b) tab-completion on the name of the generic shows them,
### and (c) methods() doesn't asterisk them.
export(
    .DollarNames.Hub, 
    as.list.Hub
)