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<h1> An interface package for the BIOM file format
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</div><h2>Documentation for package ‘biomformat’ version 1.6.0</h2>
<ul><li><a href="../DESCRIPTION">DESCRIPTION file</a>.</li>
<li><a href="../doc/index.html">User guides, package vignettes and other documentation.</a></li>
<li><a href="../NEWS">Package NEWS</a>.</li>
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<h2>Help Pages</h2>
<table width="100%">
<tr><td style="width: 25%;"><a href="biom-package.html">biom-package</a></td>
<td>This is an R package for interfacing with the biom format.</td></tr>
<tr><td style="width: 25%;"><a href="biom-methods.html">biom</a></td>
<td>Build and return an instance of the biom-class.</td></tr>
<tr><td style="width: 25%;"><a href="biom-class.html">biom-class</a></td>
<td>The biom format data class.</td></tr>
<tr><td style="width: 25%;"><a href="biom-methods.html">biom-method</a></td>
<td>Build and return an instance of the biom-class.</td></tr>
<tr><td style="width: 25%;"><a href="biom_data-methods.html">biom_data</a></td>
<td>Access main data observation matrix data from 'biom-class'.</td></tr>
<tr><td style="width: 25%;"><a href="biom_data-methods.html">biom_data-method</a></td>
<td>Access main data observation matrix data from 'biom-class'.</td></tr>
<tr><td style="width: 25%;"><a href="biom_shape-methods.html">biom_shape</a></td>
<td>The matrix dimensions of a 'biom-class' object.</td></tr>
<tr><td style="width: 25%;"><a href="biom_shape-methods.html">biom_shape-method</a></td>
<td>The matrix dimensions of a 'biom-class' object.</td></tr>
<tr><td style="width: 25%;"><a href="colnames-methods.html">colnames-method</a></td>
<td>Method extensions to 'colnames' for 'biom-class' objects.</td></tr>
<tr><td style="width: 25%;"><a href="header-methods.html">header</a></td>
<td>Extract the header from a 'biom-class' object as a list.</td></tr>
<tr><td style="width: 25%;"><a href="header-methods.html">header-method</a></td>
<td>Extract the header from a 'biom-class' object as a list.</td></tr>
<tr><td style="width: 25%;"><a href="make_biom.html">make_biom</a></td>
<td>Create a 'biom-class' from 'matrix-class' or 'data.frame'.</td></tr>
<tr><td style="width: 25%;"><a href="matrix_element_type-methods.html">matrix_element_type</a></td>
<td>Access class of data in the matrix elements of a 'biom-class' object</td></tr>
<tr><td style="width: 25%;"><a href="matrix_element_type-methods.html">matrix_element_type-method</a></td>
<td>Access class of data in the matrix elements of a 'biom-class' object</td></tr>
<tr><td style="width: 25%;"><a href="ncol-methods.html">ncol-method</a></td>
<td>Method extensions to 'ncol' for 'biom-class' objects.</td></tr>
<tr><td style="width: 25%;"><a href="nrow-methods.html">nrow-method</a></td>
<td>Method extensions to 'nrow' for 'biom-class' objects.</td></tr>
<tr><td style="width: 25%;"><a href="observation_metadata-methods.html">observation_metadata</a></td>
<td>Access observation (row) meta data from 'biom-class'.</td></tr>
<tr><td style="width: 25%;"><a href="observation_metadata-methods.html">observation_metadata-method</a></td>
<td>Access observation (row) meta data from 'biom-class'.</td></tr>
<tr><td style="width: 25%;"><a href="read_biom.html">read_biom</a></td>
<td>Read a biom-format file, returning a 'biom-class'.</td></tr>
<tr><td style="width: 25%;"><a href="read_hdf5_biom.html">read_hdf5_biom</a></td>
<td>Read in a biom-format vs 2 file, returning a 'list'.</td></tr>
<tr><td style="width: 25%;"><a href="rownames-methods.html">rownames-method</a></td>
<td>Method extensions to 'rownames' for 'biom-class' objects.</td></tr>
<tr><td style="width: 25%;"><a href="sample_metadata-methods.html">sample_metadata</a></td>
<td>Access meta data from 'biom-class'.</td></tr>
<tr><td style="width: 25%;"><a href="sample_metadata-methods.html">sample_metadata-method</a></td>
<td>Access meta data from 'biom-class'.</td></tr>
<tr><td style="width: 25%;"><a href="show-methods.html">show-method</a></td>
<td>Method extensions to show for biom objects.</td></tr>
<tr><td style="width: 25%;"><a href="write_biom.html">write_biom</a></td>
<td>Write a biom-format v1 file, returning a 'biom-class'.</td></tr>
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