/usr/lib/R/site-library/ensembldb/INDEX is in r-bioc-ensembldb 2.2.2-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 | Deprecated Deprecated functionality
EnsDb Connect to an EnsDb object
EnsDb-class Basic usage of an Ensembl based annotation
database
Filter-classes Filters supported by ensembldb
addFilter,EnsDb-method
Globally add filters to an EnsDb database
convertFilter,AnnotationFilter,EnsDb-method
Convert an AnnotationFilter to a SQL WHERE
condition for EnsDb
exonsBy Retrieve annotation data from an Ensembl based
package
getGeneRegionTrackForGviz
Utility functions
getGenomeFaFile Functionality related to DNA/RNA sequences
hasProteinData,EnsDb-method
Determine whether protein data is available in
the database
lengthOf Calculating lengths of features
listEnsDbs List EnsDb databases in a MySQL server
listProteinColumns Protein related functionality
makeEnsembldbPackage Generating a Ensembl annotation package from
Ensembl
runEnsDbApp Search annotations interactively
select Integration into the AnnotationDbi framework
seqlevelsStyle Support for other than Ensembl seqlevel style
useMySQL,EnsDb-method Use a MySQL backend
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