r-bioc-genomicfeatures 1.30.0+dfsg-1 in ubuntu - bionic / universe

About

This package is 959.0 KB. It is available at http://archive.ubuntu.com/ubuntu/pool/universe/r/r-bioc-genomicfeatures/r-bioc-genomicfeatures_1.30.0+dfsg-1_all.deb .

View its full control file here: debian/control.

Description

GNU R tools for making and manipulating transcript centric annotations

Relations

This package depends on: r-base-core (>= 3.4.2-1ubuntu4), r-api-3.4, r-bioc-biocgenerics (>= 0.1.0), r-bioc-s4vectors (>= 0.9.47), r-bioc-iranges (>= 2.11.16), r-bioc-genomeinfodb (>= 1.13.1), r-bioc-genomicranges (>= 1.29.14), r-bioc-annotationdbi (>= 1.33.15), r-cran-dbi, r-cran-rsqlite (>= 2.0), r-cran-rmysql, r-cran-rcurl, r-bioc-xvector, r-bioc-biostrings (>= 2.23.3), r-bioc-rtracklayer (>= 1.29.24), r-bioc-biomart (>= 2.17.1), r-bioc-biobase (>= 2.15.1).

This package does not recommend any other package.

This package does not conflict with any other package.

Package Contents

This package is indexed.

r-bioc-genomicfeatures 1.30.0+dfsg-1 is in ubuntu - bionic / universe. This package's architecture is: architectureless.

File Mime Type Owner Mode Size
/usr/ root:root 0o755
/usr/lib/ root:root 0o755
/usr/lib/R/ root:root 0o755
/usr/lib/R/site-library/ root:root 0o755
/usr/lib/R/site-library/GenomicFeatures/ root:root 0o755
/usr/lib/R/site-library/GenomicFeatures/CITATION text/plain root:root 0o644 940 bytes
/usr/lib/R/site-library/GenomicFeatures/DESCRIPTION text/plain root:root 0o644 2.7 KB
/usr/lib/R/site-library/GenomicFeatures/doc/ root:root 0o755
/usr/lib/R/site-library/GenomicFeatures/doc/GenomicFeatures.pdf application/pdf root:root 0o644 209.0 KB
/usr/lib/R/site-library/GenomicFeatures/doc/GenomicFeatures.R text/plain root:root 0o644 4.3 KB
/usr/lib/R/site-library/GenomicFeatures/doc/GenomicFeatures.Rnw text/x-tex root:root 0o644 18.9 KB
/usr/lib/R/site-library/GenomicFeatures/doc/index.html text/html root:root 0o644 1.4 KB
/usr/lib/R/site-library/GenomicFeatures/extdata/ root:root 0o755
/usr/lib/R/site-library/GenomicFeatures/extdata/Biomart_Ensembl_sample.sqlite application/x-sqlite3 root:root 0o644 18.0 KB
/usr/lib/R/site-library/GenomicFeatures/extdata/FeatureDb.sqlite application/x-sqlite3 root:root 0o644 34.0 KB
/usr/lib/R/site-library/GenomicFeatures/extdata/GFF3_files/ root:root 0o755
/usr/lib/R/site-library/GenomicFeatures/extdata/GFF3_files/a.gff3 text/x-c root:root 0o644 646.1 KB
/usr/lib/R/site-library/GenomicFeatures/extdata/GFF3_files/a.sqlite application/x-sqlite3 root:root 0o644 280.0 KB
/usr/lib/R/site-library/GenomicFeatures/extdata/GFF3_files/dmel-1000-r5.11.filtered.gff text/plain root:root 0o644 55.1 KB
/usr/lib/R/site-library/GenomicFeatures/extdata/GFF3_files/dmel-1000-r5.11.filtered.sqlite application/x-sqlite3 root:root 0o644 68.0 KB
/usr/lib/R/site-library/GenomicFeatures/extdata/GFF3_files/NC_011025.gff text/plain root:root 0o644 256.9 KB
/usr/lib/R/site-library/GenomicFeatures/extdata/GFF3_files/TheCanonicalGene_v1.gff3 text/plain root:root 0o644 1.7 KB
/usr/lib/R/site-library/GenomicFeatures/extdata/GFF3_files/TheCanonicalGene_v2.gff3 text/plain root:root 0o644 1.4 KB
/usr/lib/R/site-library/GenomicFeatures/extdata/GTF_files/ root:root 0o755
/usr/lib/R/site-library/GenomicFeatures/extdata/GTF_files/Aedes_aegypti.partial.gtf text/plain root:root 0o644 150.9 KB
/usr/lib/R/site-library/GenomicFeatures/extdata/GTF_files/Aedes_aegypti.partial.sqlite application/x-sqlite3 root:root 0o644 96.0 KB
/usr/lib/R/site-library/GenomicFeatures/extdata/GTF_files/test1.gtf text/plain root:root 0o644 800 bytes
/usr/lib/R/site-library/GenomicFeatures/extdata/hg19_knownGene_sample.sqlite application/x-sqlite3 root:root 0o644 109.0 KB
/usr/lib/R/site-library/GenomicFeatures/extdata/sample_ranges.rds application/gzip root:root 0o644 6.3 KB
/usr/lib/R/site-library/GenomicFeatures/help/ root:root 0o755
/usr/lib/R/site-library/GenomicFeatures/help/aliases.rds application/gzip root:root 0o644 1.1 KB
/usr/lib/R/site-library/GenomicFeatures/help/AnIndex text/plain root:root 0o644 4.8 KB
/usr/lib/R/site-library/GenomicFeatures/help/GenomicFeatures.rdb application/octet-stream root:root 0o644 178.8 KB
/usr/lib/R/site-library/GenomicFeatures/help/GenomicFeatures.rdx application/gzip root:root 0o644 933 bytes
/usr/lib/R/site-library/GenomicFeatures/help/paths.rds application/gzip root:root 0o644 483 bytes
/usr/lib/R/site-library/GenomicFeatures/html/ root:root 0o755
/usr/lib/R/site-library/GenomicFeatures/html/00Index.html text/html root:root 0o644 19.0 KB
/usr/lib/R/site-library/GenomicFeatures/html/R.css text/plain root:root 0o644 1.3 KB
/usr/lib/R/site-library/GenomicFeatures/INDEX text/plain root:root 0o644 2.9 KB
/usr/lib/R/site-library/GenomicFeatures/Meta/ root:root 0o755
/usr/lib/R/site-library/GenomicFeatures/Meta/features.rds application/gzip root:root 0o644 112 bytes
/usr/lib/R/site-library/GenomicFeatures/Meta/hsearch.rds application/gzip root:root 0o644 2.1 KB
/usr/lib/R/site-library/GenomicFeatures/Meta/links.rds application/gzip root:root 0o644 1.2 KB
/usr/lib/R/site-library/GenomicFeatures/Meta/nsInfo.rds application/gzip root:root 0o644 1.2 KB
/usr/lib/R/site-library/GenomicFeatures/Meta/package.rds application/gzip root:root 0o644 2.1 KB
/usr/lib/R/site-library/GenomicFeatures/Meta/Rd.rds application/gzip root:root 0o644 2.1 KB
/usr/lib/R/site-library/GenomicFeatures/Meta/vignette.rds application/gzip root:root 0o644 293 bytes
/usr/lib/R/site-library/GenomicFeatures/NAMESPACE text/plain root:root 0o644 3.4 KB
/usr/lib/R/site-library/GenomicFeatures/NEWS text/plain root:root 0o644 21.0 KB
/usr/lib/R/site-library/GenomicFeatures/R/ root:root 0o755
/usr/lib/R/site-library/GenomicFeatures/R/GenomicFeatures text/plain root:root 0o644 1.0 KB
/usr/lib/R/site-library/GenomicFeatures/R/GenomicFeatures.rdb application/octet-stream root:root 0o644 422.2 KB
/usr/lib/R/site-library/GenomicFeatures/R/GenomicFeatures.rdx application/gzip root:root 0o644 8.6 KB
/usr/lib/R/site-library/GenomicFeatures/script/ root:root 0o755
/usr/lib/R/site-library/GenomicFeatures/script/maketRNAFDb.R text/plain root:root 0o644 3.8 KB
/usr/lib/R/site-library/GenomicFeatures/script/makeTxDbs.R text/plain root:root 0o644 4.4 KB
/usr/lib/R/site-library/GenomicFeatures/txdb-template/ root:root 0o755
/usr/lib/R/site-library/GenomicFeatures/txdb-template/DESCRIPTION text/plain root:root 0o644 424 bytes
/usr/lib/R/site-library/GenomicFeatures/txdb-template/man/ root:root 0o755
/usr/lib/R/site-library/GenomicFeatures/txdb-template/man/package.Rd text/plain root:root 0o644 1007 bytes
/usr/lib/R/site-library/GenomicFeatures/txdb-template/NAMESPACE text/plain root:root 0o644 214 bytes
/usr/lib/R/site-library/GenomicFeatures/txdb-template/R/ root:root 0o755
/usr/lib/R/site-library/GenomicFeatures/txdb-template/R/zzz.R text/plain root:root 0o644 502 bytes
/usr/lib/R/site-library/GenomicFeatures/unitTests/ root:root 0o755
/usr/lib/R/site-library/GenomicFeatures/unitTests/test_disjointExons.R text/plain root:root 0o644 701 bytes
/usr/lib/R/site-library/GenomicFeatures/unitTests/test_makeIdsForUniqueDataFrameRows.R text/plain root:root 0o644 518 bytes
/usr/lib/R/site-library/GenomicFeatures/unitTests/test_makeTxDbFromBiomart.R text/plain root:root 0o644 2.8 KB
/usr/lib/R/site-library/GenomicFeatures/unitTests/test_makeTxDbFromGFF.R text/plain root:root 0o644 2.9 KB
/usr/lib/R/site-library/GenomicFeatures/unitTests/test_makeTxDbFromGRanges.R text/plain root:root 0o644 14.1 KB
/usr/lib/R/site-library/GenomicFeatures/unitTests/test_makeTxDbFromUCSC.R text/plain root:root 0o644 3.3 KB
/usr/lib/R/site-library/GenomicFeatures/unitTests/test_makeTxDb.R text/plain root:root 0o644 3.2 KB
/usr/lib/R/site-library/GenomicFeatures/unitTests/test_mapIdsToRanges.R text/plain root:root 0o644 2.9 KB
/usr/lib/R/site-library/GenomicFeatures/unitTests/test_transcriptsByOverlaps.R text/plain root:root 0o644 3.9 KB
/usr/lib/R/site-library/GenomicFeatures/unitTests/test_transcriptsBy.R text/plain root:root 0o644 9.0 KB
/usr/lib/R/site-library/GenomicFeatures/unitTests/test_transcripts.R text/plain root:root 0o644 9.9 KB
/usr/share/ root:root 0o755
/usr/share/doc/ root:root 0o755
/usr/share/doc/r-bioc-genomicfeatures/ root:root 0o755
/usr/share/doc/r-bioc-genomicfeatures/changelog.Debian.gz application/gzip root:root 0o644 666 bytes
/usr/share/doc/r-bioc-genomicfeatures/copyright text/plain root:root 0o644 5.3 KB

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