/usr/lib/R/site-library/Gviz/extdata/biomartVersionsLatest.txt is in r-bioc-gviz 1.22.0-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 | species dateversion value dataset version date ucscId speciesShort speciesLong
Ailuropoda melanoleuca (Panda) Dec.2014v78 ailMel1 amelanoleuca_gene_ensembl 78 Dec.2014 ailMel1 Panda Ailuropoda melanoleuca
Anas platyrhynchos (Duck) Dec.2014v78 BGI_duck_1.0 aplatyrhynchos_gene_ensembl 78 Dec.2014 anaPlat1 Duck Anas platyrhynchos
Anolis carolinensis (Anole lizard) May.2009v54 AnoCar1.0 acarolinensis_gene_ensembl 54 May.2009 anoCar1 Anole lizard Anolis carolinensis
Anolis carolinensis (Anole lizard) Dec.2014v78 AnoCar2.0 acarolinensis_gene_ensembl 78 Dec.2014 anoCar2 Anole lizard Anolis carolinensis
Astyanax mexicanus (Cave fish) Dec.2014v78 AstMex102 amexicanus_gene_ensembl 78 Dec.2014 astMex1 Cave fish Astyanax mexicanus
Bos taurus (Cow) May.2009v54 Btau_4.0 btaurus_gene_ensembl 54 May.2009 bosTau4 Cow Bos taurus
Bos taurus (Cow) Dec.2014v78 UMD3.1 btaurus_gene_ensembl 78 Dec.2014 bosTau6 Cow Bos taurus
Caenorhabditis elegans May.2009v54 WS190 celegans_gene_ensembl 54 May.2009 ce6 Caenorhabditis elegans Caenorhabditis elegans
Caenorhabditis elegans Aug.2010v59 WS210 celegans_gene_ensembl 59 Aug.2010 ce9 Caenorhabditis elegans Caenorhabditis elegans
Caenorhabditis elegans Oct.2012v69 WBcel215 celegans_gene_ensembl 69 Oct.2012 ce8 Caenorhabditis elegans Caenorhabditis elegans
Caenorhabditis elegans Dec.2014v78 WBcel235 celegans_gene_ensembl 78 Dec.2014 ce10 Caenorhabditis elegans Caenorhabditis elegans
Callithrix jacchus (Marmoset) Dec.2014v78 C_jacchus3.2.1 cjacchus_gene_ensembl 78 Dec.2014 calJac3 Marmoset Callithrix jacchus
Canis familiaris (Dog) May.2012v67 CanFam_2.0 cfamiliaris_gene_ensembl 66 May.2012 canFam2 Dog Canis familiaris
Canis familiaris (Dog) Dec.2014v78 CanFam3.1 cfamiliaris_gene_ensembl 78 Dec.2014 canFam3 Dog Canis familiaris
Cavia porcellus (Guinea Pig) Dec.2014v78 cavPor3 cporcellus_gene_ensembl 78 Dec.2014 cavPor3 Guinea Pig Cavia porcellus
Chlorocebus sabaeus (Vervet-AGM) Dec.2014v78 ChlSab1.1 csabaeus_gene_ensembl 78 Dec.2014 chlSab1 Vervet-AGM Chlorocebus sabaeus
Choloepus hoffmanni (Sloth) Dec.2014v78 choHof1 choffmanni_gene_ensembl 78 Dec.2014 choHof1 Sloth Choloepus hoffmanni
Ciona intestinalis Dec.2014v78 KH cintestinalis_gene_ensembl 78 Dec.2014 ci2 Ciona intestinalis Ciona intestinalis
Ciona savignyi Dec.2014v78 CSAV2.0 csavignyi_gene_ensembl 78 Dec.2014 cioSav2 Ciona savignyi Ciona savignyi
Danio rerio (Zebrafish) May.2009v54 Zv8 drerio_gene_ensembl 54 May.2009 danRer7 Zebrafish Danio rerio
Danio rerio (Zebrafish) Dec.2014v78 Zv9 drerio_gene_ensembl 78 Dec.2014 danRer6 Zebrafish Danio rerio
Dasypus novemcinctus (Armadillo) Dec.2011v65 ARMA dnovemcinctus_gene_ensembl 65 Dec.2011 dasNov3 Armadillo Dasypus novemcinctus
Dasypus novemcinctus (Armadillo) May.2012v67 dasNov2 dnovemcinctus_gene_ensembl 66 May.2012 dasNov2 Armadillo Dasypus novemcinctus
Dasypus novemcinctus (Armadillo) Dec.2014v78 Dasnov3.0 dnovemcinctus_gene_ensembl 78 Dec.2014 dasNov3 Armadillo Dasypus novemcinctus
Dipodomys ordii (Kangaroo rat) Dec.2014v78 dipOrd1 dordii_gene_ensembl 78 Dec.2014 dipOrd1 Kangaroo rat Dipodomys ordii
Drosophila melanogaster (Fly) Dec.2014v78 BDGP5 dmelanogaster_gene_ensembl 78 Dec.2014 dm3 Fly Drosophila melanogaster
Echinops telfairi (Tenrec) Dec.2014v78 TENREC etelfairi_gene_ensembl 78 Dec.2014 echTel2 Tenrec Echinops telfairi
Equus caballus (Horse) Dec.2014v78 EquCab2 ecaballus_gene_ensembl 78 Dec.2014 equCab2 Horse Equus caballus
Erinaceus europaeus (Hedgehog) Dec.2014v78 eriEur1 eeuropaeus_gene_ensembl 78 Dec.2014 eriEur1 Hedgehog Erinaceus europaeus
Felis catus (Cat) Dec.2014v78 Felis_catus_6.2 fcatus_gene_ensembl 78 Dec.2014 felCat5 Cat Felis catus
Ficedula albicollis (Collared flycatcher) Dec.2014v78 FicAlb_1.4 falbicollis_gene_ensembl 78 Dec.2014 ficAlb1 Collared flycatcher Ficedula albicollis
Gadus morhua (Cod) Dec.2014v78 gadMor1 gmorhua_gene_ensembl 78 Dec.2014 gadMor1 Cod Gadus morhua
Gallus gallus (Chicken) May.2012v67 WASHUC2 ggallus_gene_ensembl 66 May.2012 galGal3 Chicken Gallus gallus
Gallus gallus (Chicken) Dec.2014v78 Galgal4 ggallus_gene_ensembl 78 Dec.2014 galGal4 Chicken Gallus gallus
Gasterosteus aculeatus (Stickleback) Dec.2014v78 BROAD S1 gaculeatus_gene_ensembl 78 Dec.2014 gasAcu1 Stickleback Gasterosteus aculeatus
Gorilla gorilla (Gorilla) May.2009v54 gorGor1 ggorilla_gene_ensembl 54 May.2009 gorGor1 Gorilla Gorilla gorilla
Gorilla gorilla (Gorilla) Dec.2014v78 gorGor3.1 ggorilla_gene_ensembl 78 Dec.2014 gorGor3 Gorilla Gorilla gorilla
Homo sapiens (Human) May.2009v54 NCBI36 hsapiens_gene_ensembl 54 May.2009 hg18 Human Homo sapiens
Homo sapiens (Human) Feb.2014v75 GRCh37.p13 hsapiens_gene_ensembl 75 Feb.2014 hg19 Human Homo sapiens
Homo sapiens (Human) Dec.2014v78 GRCh38 hsapiens_gene_ensembl 78 Dec.2014 hg38 Human Homo sapiens
Ictidomys tridecemlineatus (Squirrel) May.2009v54 speTri1 stridecemlineatus_gene_ensembl 54 May.2009 speTri1 Squirrel Ictidomys tridecemlineatus
Ictidomys tridecemlineatus (Squirrel) Dec.2014v78 spetri2 itridecemlineatus_gene_ensembl 78 Dec.2014 speTri2 Squirrel Ictidomys tridecemlineatus
Latimeria chalumnae (Coelacanth) Dec.2014v78 LatCha1 lchalumnae_gene_ensembl 78 Dec.2014 latCha1 Coelacanth Latimeria chalumnae
Lepisosteus oculatus (Spotted gar) Dec.2014v78 LepOcu1 loculatus_gene_ensembl 78 Dec.2014 lepOcu1 Spotted gar Lepisosteus oculatus
Loxodonta africana (Elephant) May.2009v54 loxAfr2 lafricana_gene_ensembl 54 May.2009 loxAfr2 Elephant Loxodonta africana
Loxodonta africana (Elephant) Dec.2014v78 Loxafr3.0 lafricana_gene_ensembl 78 Dec.2014 loxAfr3 Elephant Loxodonta africana
Macaca mulatta (Macaque) Dec.2014v78 MMUL1.0 mmulatta_gene_ensembl 78 Dec.2014 mMul1 Macaque Macaca mulatta
Macropus eugenii (Wallaby) Dec.2014v78 Meug_1.0 meugenii_gene_ensembl 78 Dec.2014 macEug2 Wallaby Macropus eugenii
Meleagris gallopavo (Turkey) Dec.2014v78 Turkey_2.01 mgallopavo_gene_ensembl 78 Dec.2014 melGa1 Turkey Meleagris gallopavo
Microcebus murinus (Mouse lemur) Dec.2014v78 micMur1 mmurinus_gene_ensembl 78 Dec.2014 micMur1 Mouse lemur Microcebus murinus
Monodelphis domestica (Opossum) Dec.2014v78 monDom5 mdomestica_gene_ensembl 78 Dec.2014 monDom5 Opossum Monodelphis domestica
Mus musculus (Mouse) May.2012v67 NCBIM37 mmusculus_gene_ensembl 66 May.2012 mm9 Mouse Mus musculus
Mus musculus (Mouse) Dec.2014v78 GRCm38.p3 mmusculus_gene_ensembl 78 Dec.2014 mm10 Mouse Mus musculus
Mustela putorius furo (Domestic ferret) Dec.2014v78 MusPutFur1.0 mfuro_gene_ensembl 78 Dec.2014 musFur1 Domestic ferret Mustela putorius furo
Myotis lucifugus (Microbat) May.2009v54 myoLuc1 mlucifugus_gene_ensembl 54 May.2009 myoLuc1 Microbat Myotis lucifugus
Myotis lucifugus (Microbat) Dec.2014v78 Myoluc2.0 mlucifugus_gene_ensembl 78 Dec.2014 myoLuc2 Microbat Myotis lucifugus
Nomascus leucogenys (Gibbon) Dec.2014v78 Nleu1.0 nleucogenys_gene_ensembl 78 Dec.2014 nomLeu1 Gibbon Nomascus leucogenys
Ochotona princeps (Pika) Dec.2014v78 OchPri2.0 oprinceps_gene_ensembl 78 Dec.2014 ochPri2 Pika Ochotona princeps
Ornithorhynchus anatinus (Platypus) Dec.2014v78 OANA5 oanatinus_gene_ensembl 78 Dec.2014 ornAna1 Platypus Ornithorhynchus anatinus
Oryctolagus cuniculus (Rabbit) May.2009v54 RABBIT ocuniculus_gene_ensembl 54 May.2009 oryCun1 Rabbit Oryctolagus cuniculus
Oryctolagus cuniculus (Rabbit) Dec.2014v78 OryCun2.0 ocuniculus_gene_ensembl 78 Dec.2014 oryCun2 Rabbit Oryctolagus cuniculus
Oryzias latipes (Medaka) Dec.2014v78 HdrR olatipes_gene_ensembl 78 Dec.2014 oryLat2 Medaka Oryzias latipes
Otolemur garnettii (Bushbaby) May.2009v54 otoGar1 ogarnettii_gene_ensembl 54 May.2009 otoGar1 Bushbaby Otolemur garnettii
Otolemur garnettii (Bushbaby) Dec.2014v78 OtoGar3 ogarnettii_gene_ensembl 78 Dec.2014 otoGar3 Bushbaby Otolemur garnettii
Ovis aries (Sheep) Dec.2014v78 Oar_v3.1 oaries_gene_ensembl 78 Dec.2014 oviAri3 Sheep Ovis aries
Pan troglodytes (Chimp) May.2009v54 CHIMP2.1 ptroglodytes_gene_ensembl 54 May.2009 panTro2 Chimp Pan troglodytes
Pan troglodytes (Chimp) Dec.2014v78 CHIMP2.1.4 ptroglodytes_gene_ensembl 78 Dec.2014 panTro4 Chimp Pan troglodytes
Papio anubis (Olive Baboon) Dec.2014v78 PapAnu2.0 panubis_gene_ensembl 78 Dec.2014 papAnu2 Olive Baboon Papio anubis
Pelodiscus sinensis (Chinese softshell turtle) Dec.2014v78 PelSin_1.0 psinensis_gene_ensembl 78 Dec.2014 pelSin1 Chinese softshell turtle Pelodiscus sinensis
Petromyzon marinus (Lamprey) Dec.2014v78 Pmarinus_7.0 pmarinus_gene_ensembl 78 Dec.2014 petMar2 Lamprey Petromyzon marinus
Poecilia formosa (Amazon molly) Dec.2014v78 Poecilia_formosa-5.1.2 pformosa_gene_ensembl 78 Dec.2014 poeFor1 Amazon molly Poecilia formosa
Pongo abelii (Orangutan) Dec.2014v78 PPYG2 pabelii_gene_ensembl 78 Dec.2014 ponAbe2 Orangutan Pongo abelii
Procavia capensis (Rock hyrax) Dec.2014v78 proCap1 pcapensis_gene_ensembl 78 Dec.2014 proCap1 Rock hyrax Procavia capensis
Pteropus vampyrus (Megabat) Dec.2014v78 pteVam1 pvampyrus_gene_ensembl 78 Dec.2014 pteVam1 Megabat Pteropus vampyrus
Rattus norvegicus (Rat) May.2012v67 RGSC3.4 rnorvegicus_gene_ensembl 66 May.2012 rn4 Rat Rattus norvegicus
Rattus norvegicus (Rat) Dec.2014v78 Rnor_5.0 rnorvegicus_gene_ensembl 78 Dec.2014 rn5 Rat Rattus norvegicus
Rattus norvegicus (Rat) May.2015v80 Rnor_6.0 rnorvegicus_gene_ensembl 84 May.2015 rn6 Rat Rattus norvegicus
Saccharomyces cerevisiae Dec.2014v78 R64-1-1 scerevisiae_gene_ensembl 78 Dec.2014 sacCer3 Saccharomyces cerevisiae Saccharomyces cerevisiae
Sarcophilus harrisii (Tasmanian Devil) Dec.2014v78 Devil_refv7.0 sharrisii_gene_ensembl 78 Dec.2014 sarHar1 Tasmanian Devil Sarcophilus harrisii
Sorex araneus (Shrew) Dec.2014v78 sorAra1 saraneus_gene_ensembl 78 Dec.2014 sorAra1 Shrew Sorex araneus
Sus scrofa (Pig) May.2012v67 Sscrofa9 sscrofa_gene_ensembl 66 May.2009 susScr2 Pig Sus scrofa
Sus scrofa (Pig) Dec.2014v78 Sscrofa10.2 sscrofa_gene_ensembl 78 Dec.2014 susScr3 Pig Sus scrofa
Taeniopygia guttata (Zebra finch) Dec.2014v78 taeGut3.2.4 tguttata_gene_ensembl 78 Dec.2014 taeGut2 Zebra finch Taeniopygia guttata
Takifugu rubripes (Fugu) Dec.2014v78 FUGU4.0 trubripes_gene_ensembl 78 Dec.2014 fr2 Fugu Takifugu rubripes
Tarsius syrichta (Tarsier) Dec.2014v78 tarSyr1 syrichta_gene_ensembl 78 Dec.2014 tarSyr1 Tarsier Tarsius syrichta
Tetraodon nigroviridis (Tetraodon) Dec.2014v78 TETRAODON8.0 tnigroviridis_gene_ensembl 78 Dec.2014 tetNig2 Tetraodon Tetraodon nigroviridis
Tupaia belangeri (Tree Shrew) Dec.2014v78 tupBel1 tbelangeri_gene_ensembl 78 Dec.2014 tupBel1 Tree Shrew Tupaia belangeri
Tursiops truncatus (Dolphin) Dec.2014v78 turTru1 ttruncatus_gene_ensembl 78 Dec.2014 turTru1 Dolphin Tursiops truncatus
Vicugna pacos (Alpaca) Dec.2014v78 vicPac1 vpacos_gene_ensembl 78 Dec.2014 vicPac1 Alpaca Vicugna pacos
Xenopus tropicalis (Xenopus) May.2009v54 JGI4.1 xtropicalis_gene_ensembl 54 May.2009 xenTro2 Xenopus Xenopus tropicalis
Xenopus tropicalis (Xenopus) Dec.2014v78 JGI4.2 xtropicalis_gene_ensembl 78 Dec.2014 xenTro3 Xenopus Xenopus tropicalis
Xiphophorus maculatus (Platyfish) Dec.2014v78 Xipmac4.4.2 xmaculatus_gene_ensembl 78 Dec.2014 xipMac1 Platyfish Xiphophorus maculatus
|