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<h1> SummarizedExperiment container
<img class="toplogo" src="../../../doc/html/Rlogo.svg" alt="[R logo]" />
</h1>
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</div><h2>Documentation for package ‘SummarizedExperiment’ version 1.8.0</h2>
<ul><li><a href="../DESCRIPTION">DESCRIPTION file</a>.</li>
<li><a href="../doc/index.html">User guides, package vignettes and other documentation.</a></li>
<li><a href="../NEWS">Package NEWS</a>.</li>
</ul>
<h2>Help Pages</h2>
<p style="text-align: center;">
<a href="#A">A</a>
<a href="#C">C</a>
<a href="#D">D</a>
<a href="#E">E</a>
<a href="#F">F</a>
<a href="#G">G</a>
<a href="#I">I</a>
<a href="#K">K</a>
<a href="#L">L</a>
<a href="#M">M</a>
<a href="#N">N</a>
<a href="#O">O</a>
<a href="#P">P</a>
<a href="#R">R</a>
<a href="#S">S</a>
<a href="#T">T</a>
<a href="#U">U</a>
<a href="#W">W</a>
<a href="#misc">misc</a>
</p>
<h2><a name="A">-- A --</a></h2>
<table width="100%">
<tr><td style="width: 25%;"><a href="Assays-class.html">acbind-method</a></td>
<td>Assays objects</td></tr>
<tr><td style="width: 25%;"><a href="Assays-class.html">arbind-method</a></td>
<td>Assays objects</td></tr>
<tr><td style="width: 25%;"><a href="SummarizedExperiment-class.html">assay</a></td>
<td>SummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="SummarizedExperiment-class.html">assay-method</a></td>
<td>SummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="SummarizedExperiment-class.html">assay<-</a></td>
<td>SummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="SummarizedExperiment-class.html">assay<--method</a></td>
<td>SummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="SummarizedExperiment-class.html">assayNames</a></td>
<td>SummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="SummarizedExperiment-class.html">assayNames-method</a></td>
<td>SummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="SummarizedExperiment-class.html">assayNames<-</a></td>
<td>SummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="SummarizedExperiment-class.html">assayNames<--method</a></td>
<td>SummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="Assays-class.html">Assays</a></td>
<td>Assays objects</td></tr>
<tr><td style="width: 25%;"><a href="SummarizedExperiment-class.html">assays</a></td>
<td>SummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="Assays-class.html">Assays-class</a></td>
<td>Assays objects</td></tr>
<tr><td style="width: 25%;"><a href="SummarizedExperiment-class.html">assays-method</a></td>
<td>SummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="SummarizedExperiment-class.html">assays<-</a></td>
<td>SummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="SummarizedExperiment-class.html">assays<--method</a></td>
<td>SummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="Assays-class.html">AssaysInEnv</a></td>
<td>Assays objects</td></tr>
<tr><td style="width: 25%;"><a href="Assays-class.html">AssaysInEnv-class</a></td>
<td>Assays objects</td></tr>
</table>
<h2><a name="C">-- C --</a></h2>
<table width="100%">
<tr><td style="width: 25%;"><a href="Assays-class.html">cbind-method</a></td>
<td>Assays objects</td></tr>
<tr><td style="width: 25%;"><a href="SummarizedExperiment-class.html">cbind-method</a></td>
<td>SummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="Assays-class.html">class:Assays</a></td>
<td>Assays objects</td></tr>
<tr><td style="width: 25%;"><a href="Assays-class.html">class:AssaysInEnv</a></td>
<td>Assays objects</td></tr>
<tr><td style="width: 25%;"><a href="RangedSummarizedExperiment-class.html">class:RangedSummarizedExperiment</a></td>
<td>RangedSummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="Assays-class.html">class:ShallowData</a></td>
<td>Assays objects</td></tr>
<tr><td style="width: 25%;"><a href="Assays-class.html">class:ShallowSimpleListAssays</a></td>
<td>Assays objects</td></tr>
<tr><td style="width: 25%;"><a href="Assays-class.html">class:SimpleListAssays</a></td>
<td>Assays objects</td></tr>
<tr><td style="width: 25%;"><a href="SummarizedExperiment-class.html">class:SummarizedExperiment</a></td>
<td>SummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="Assays-class.html">coerce-method</a></td>
<td>Assays objects</td></tr>
<tr><td style="width: 25%;"><a href="RangedSummarizedExperiment-class.html">coerce-method</a></td>
<td>RangedSummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="makeSummarizedExperimentFromExpressionSet.html">coerce-method</a></td>
<td>Make a RangedSummarizedExperiment object from an ExpressionSet and vice-versa</td></tr>
<tr><td style="width: 25%;"><a href="SummarizedExperiment-class.html">colData</a></td>
<td>SummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="SummarizedExperiment-class.html">colData-method</a></td>
<td>SummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="SummarizedExperiment-class.html">colData<-</a></td>
<td>SummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="SummarizedExperiment-class.html">colData<--method</a></td>
<td>SummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="RangedSummarizedExperiment-class.html">Compare-method</a></td>
<td>RangedSummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="coverage-methods.html">coverage</a></td>
<td>Coverage of a RangedSummarizedExperiment object</td></tr>
<tr><td style="width: 25%;"><a href="coverage-methods.html">coverage-method</a></td>
<td>Coverage of a RangedSummarizedExperiment object</td></tr>
<tr><td style="width: 25%;"><a href="coverage-methods.html">coverage-methods</a></td>
<td>Coverage of a RangedSummarizedExperiment object</td></tr>
</table>
<h2><a name="D">-- D --</a></h2>
<table width="100%">
<tr><td style="width: 25%;"><a href="Assays-class.html">dim-method</a></td>
<td>Assays objects</td></tr>
<tr><td style="width: 25%;"><a href="SummarizedExperiment-class.html">dim-method</a></td>
<td>SummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="RangedSummarizedExperiment-class.html">dimnames-method</a></td>
<td>RangedSummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="SummarizedExperiment-class.html">dimnames-method</a></td>
<td>SummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="RangedSummarizedExperiment-class.html">dimnames<--method</a></td>
<td>RangedSummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="SummarizedExperiment-class.html">dimnames<--method</a></td>
<td>SummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="inter-range-methods.html">disjointBins</a></td>
<td>Inter range transformations of a RangedSummarizedExperiment object</td></tr>
<tr><td style="width: 25%;"><a href="inter-range-methods.html">disjointBins-method</a></td>
<td>Inter range transformations of a RangedSummarizedExperiment object</td></tr>
<tr><td style="width: 25%;"><a href="nearest-methods.html">distance</a></td>
<td>Finding the nearest range neighbor in RangedSummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="nearest-methods.html">distance-method</a></td>
<td>Finding the nearest range neighbor in RangedSummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="nearest-methods.html">distanceToNearest</a></td>
<td>Finding the nearest range neighbor in RangedSummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="nearest-methods.html">distanceToNearest-method</a></td>
<td>Finding the nearest range neighbor in RangedSummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="RangedSummarizedExperiment-class.html">duplicated-method</a></td>
<td>RangedSummarizedExperiment objects</td></tr>
</table>
<h2><a name="E">-- E --</a></h2>
<table width="100%">
<tr><td style="width: 25%;"><a href="RangedSummarizedExperiment-class.html">elementMetadata-method</a></td>
<td>RangedSummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="RangedSummarizedExperiment-class.html">elementMetadata<--method</a></td>
<td>RangedSummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="RangedSummarizedExperiment-class.html">end-method</a></td>
<td>RangedSummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="RangedSummarizedExperiment-class.html">end<--method</a></td>
<td>RangedSummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="SummarizedExperiment-class.html">extractROWS-method</a></td>
<td>SummarizedExperiment objects</td></tr>
</table>
<h2><a name="F">-- F --</a></h2>
<table width="100%">
<tr><td style="width: 25%;"><a href="findOverlaps-methods.html">findOverlaps</a></td>
<td>Finding overlapping ranges in RangedSummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="findOverlaps-methods.html">findOverlaps-method</a></td>
<td>Finding overlapping ranges in RangedSummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="findOverlaps-methods.html">findOverlaps-methods</a></td>
<td>Finding overlapping ranges in RangedSummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="intra-range-methods.html">flank</a></td>
<td>Intra range transformations of a RangedSummarizedExperiment object</td></tr>
<tr><td style="width: 25%;"><a href="intra-range-methods.html">flank-method</a></td>
<td>Intra range transformations of a RangedSummarizedExperiment object</td></tr>
<tr><td style="width: 25%;"><a href="nearest-methods.html">follow</a></td>
<td>Finding the nearest range neighbor in RangedSummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="nearest-methods.html">follow-method</a></td>
<td>Finding the nearest range neighbor in RangedSummarizedExperiment objects</td></tr>
</table>
<h2><a name="G">-- G --</a></h2>
<table width="100%">
<tr><td style="width: 25%;"><a href="makeSummarizedExperimentFromExpressionSet.html">geneRangeMapper</a></td>
<td>Make a RangedSummarizedExperiment object from an ExpressionSet and vice-versa</td></tr>
<tr><td style="width: 25%;"><a href="RangedSummarizedExperiment-class.html">granges-method</a></td>
<td>RangedSummarizedExperiment objects</td></tr>
</table>
<h2><a name="I">-- I --</a></h2>
<table width="100%">
<tr><td style="width: 25%;"><a href="inter-range-methods.html">inter-range-methods</a></td>
<td>Inter range transformations of a RangedSummarizedExperiment object</td></tr>
<tr><td style="width: 25%;"><a href="intra-range-methods.html">intra-range-methods</a></td>
<td>Intra range transformations of a RangedSummarizedExperiment object</td></tr>
<tr><td style="width: 25%;"><a href="RangedSummarizedExperiment-class.html">is.unsorted-method</a></td>
<td>RangedSummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="inter-range-methods.html">isDisjoint</a></td>
<td>Inter range transformations of a RangedSummarizedExperiment object</td></tr>
<tr><td style="width: 25%;"><a href="inter-range-methods.html">isDisjoint-method</a></td>
<td>Inter range transformations of a RangedSummarizedExperiment object</td></tr>
</table>
<h2><a name="K">-- K --</a></h2>
<table width="100%">
<tr><td style="width: 25%;"><a href="readKallisto.html">KALLISTO_ASSAYS</a></td>
<td>Input kallisto or kallisto bootstrap results.</td></tr>
</table>
<h2><a name="L">-- L --</a></h2>
<table width="100%">
<tr><td style="width: 25%;"><a href="Assays-class.html">length-method</a></td>
<td>Assays objects</td></tr>
<tr><td style="width: 25%;"><a href="SummarizedExperiment-class.html">length-method</a></td>
<td>SummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="saveHDF5SummarizedExperiment.html">loadHDF5SummarizedExperiment</a></td>
<td>Save/load a HDF5-based SummarizedExperiment object</td></tr>
</table>
<h2><a name="M">-- M --</a></h2>
<table width="100%">
<tr><td style="width: 25%;"><a href="makeSummarizedExperimentFromDataFrame.html">makeSummarizedExperimentFromDataFrame</a></td>
<td>Make a RangedSummarizedExperiment from a data.frame or DataFrame</td></tr>
<tr><td style="width: 25%;"><a href="makeSummarizedExperimentFromExpressionSet.html">makeSummarizedExperimentFromExpressionSet</a></td>
<td>Make a RangedSummarizedExperiment object from an ExpressionSet and vice-versa</td></tr>
<tr><td style="width: 25%;"><a href="RangedSummarizedExperiment-class.html">mcols-method</a></td>
<td>RangedSummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="RangedSummarizedExperiment-class.html">mcols<--method</a></td>
<td>RangedSummarizedExperiment objects</td></tr>
</table>
<h2><a name="N">-- N --</a></h2>
<table width="100%">
<tr><td style="width: 25%;"><a href="makeSummarizedExperimentFromExpressionSet.html">naiveRangeMapper</a></td>
<td>Make a RangedSummarizedExperiment object from an ExpressionSet and vice-versa</td></tr>
<tr><td style="width: 25%;"><a href="Assays-class.html">names-method</a></td>
<td>Assays objects</td></tr>
<tr><td style="width: 25%;"><a href="RangedSummarizedExperiment-class.html">names-method</a></td>
<td>RangedSummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="SummarizedExperiment-class.html">names-method</a></td>
<td>SummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="Assays-class.html">names<--method</a></td>
<td>Assays objects</td></tr>
<tr><td style="width: 25%;"><a href="RangedSummarizedExperiment-class.html">names<--method</a></td>
<td>RangedSummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="SummarizedExperiment-class.html">names<--method</a></td>
<td>SummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="intra-range-methods.html">narrow</a></td>
<td>Intra range transformations of a RangedSummarizedExperiment object</td></tr>
<tr><td style="width: 25%;"><a href="intra-range-methods.html">narrow-method</a></td>
<td>Intra range transformations of a RangedSummarizedExperiment object</td></tr>
<tr><td style="width: 25%;"><a href="nearest-methods.html">nearest</a></td>
<td>Finding the nearest range neighbor in RangedSummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="nearest-methods.html">nearest-method</a></td>
<td>Finding the nearest range neighbor in RangedSummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="nearest-methods.html">nearest-methods</a></td>
<td>Finding the nearest range neighbor in RangedSummarizedExperiment objects</td></tr>
</table>
<h2><a name="O">-- O --</a></h2>
<table width="100%">
<tr><td style="width: 25%;"><a href="RangedSummarizedExperiment-class.html">order-method</a></td>
<td>RangedSummarizedExperiment objects</td></tr>
</table>
<h2><a name="P">-- P --</a></h2>
<table width="100%">
<tr><td style="width: 25%;"><a href="RangedSummarizedExperiment-class.html">pcompare-method</a></td>
<td>RangedSummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="nearest-methods.html">precede</a></td>
<td>Finding the nearest range neighbor in RangedSummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="nearest-methods.html">precede-method</a></td>
<td>Finding the nearest range neighbor in RangedSummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="makeSummarizedExperimentFromExpressionSet.html">probeRangeMapper</a></td>
<td>Make a RangedSummarizedExperiment object from an ExpressionSet and vice-versa</td></tr>
<tr><td style="width: 25%;"><a href="intra-range-methods.html">promoters</a></td>
<td>Intra range transformations of a RangedSummarizedExperiment object</td></tr>
<tr><td style="width: 25%;"><a href="intra-range-methods.html">promoters-method</a></td>
<td>Intra range transformations of a RangedSummarizedExperiment object</td></tr>
</table>
<h2><a name="R">-- R --</a></h2>
<table width="100%">
<tr><td style="width: 25%;"><a href="RangedSummarizedExperiment-class.html">RangedSummarizedExperiment</a></td>
<td>RangedSummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="RangedSummarizedExperiment-class.html">RangedSummarizedExperiment-class</a></td>
<td>RangedSummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="RangedSummarizedExperiment-class.html">ranges-method</a></td>
<td>RangedSummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="RangedSummarizedExperiment-class.html">ranges<--method</a></td>
<td>RangedSummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="RangedSummarizedExperiment-class.html">rank-method</a></td>
<td>RangedSummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="Assays-class.html">rbind-method</a></td>
<td>Assays objects</td></tr>
<tr><td style="width: 25%;"><a href="SummarizedExperiment-class.html">rbind-method</a></td>
<td>SummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="readKallisto.html">readKallisto</a></td>
<td>Input kallisto or kallisto bootstrap results.</td></tr>
<tr><td style="width: 25%;"><a href="readKallisto.html">readKallistoBootstrap</a></td>
<td>Input kallisto or kallisto bootstrap results.</td></tr>
<tr><td style="width: 25%;"><a href="SummarizedExperiment-class.html">realize-method</a></td>
<td>SummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="SummarizedExperiment-class.html">replaceROWS-method</a></td>
<td>SummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="intra-range-methods.html">resize</a></td>
<td>Intra range transformations of a RangedSummarizedExperiment object</td></tr>
<tr><td style="width: 25%;"><a href="intra-range-methods.html">resize-method</a></td>
<td>Intra range transformations of a RangedSummarizedExperiment object</td></tr>
<tr><td style="width: 25%;"><a href="intra-range-methods.html">restrict</a></td>
<td>Intra range transformations of a RangedSummarizedExperiment object</td></tr>
<tr><td style="width: 25%;"><a href="intra-range-methods.html">restrict-method</a></td>
<td>Intra range transformations of a RangedSummarizedExperiment object</td></tr>
<tr><td style="width: 25%;"><a href="SummarizedExperiment-class.html">rowData</a></td>
<td>SummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="SummarizedExperiment-class.html">rowData-method</a></td>
<td>SummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="SummarizedExperiment-class.html">rowData<-</a></td>
<td>SummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="SummarizedExperiment-class.html">rowData<--method</a></td>
<td>SummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="RangedSummarizedExperiment-class.html">rowRanges</a></td>
<td>RangedSummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="RangedSummarizedExperiment-class.html">rowRanges-method</a></td>
<td>RangedSummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="RangedSummarizedExperiment-class.html">rowRanges<-</a></td>
<td>RangedSummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="RangedSummarizedExperiment-class.html">rowRanges<--method</a></td>
<td>RangedSummarizedExperiment objects</td></tr>
</table>
<h2><a name="S">-- S --</a></h2>
<table width="100%">
<tr><td style="width: 25%;"><a href="saveHDF5SummarizedExperiment.html">saveHDF5SummarizedExperiment</a></td>
<td>Save/load a HDF5-based SummarizedExperiment object</td></tr>
<tr><td style="width: 25%;"><a href="RangedSummarizedExperiment-class.html">seqinfo-method</a></td>
<td>RangedSummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="RangedSummarizedExperiment-class.html">seqinfo<--method</a></td>
<td>RangedSummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="RangedSummarizedExperiment-class.html">seqnames-method</a></td>
<td>RangedSummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="Assays-class.html">ShallowData</a></td>
<td>Assays objects</td></tr>
<tr><td style="width: 25%;"><a href="Assays-class.html">ShallowData-class</a></td>
<td>Assays objects</td></tr>
<tr><td style="width: 25%;"><a href="Assays-class.html">ShallowSimpleListAssays</a></td>
<td>Assays objects</td></tr>
<tr><td style="width: 25%;"><a href="Assays-class.html">ShallowSimpleListAssays-class</a></td>
<td>Assays objects</td></tr>
<tr><td style="width: 25%;"><a href="intra-range-methods.html">shift</a></td>
<td>Intra range transformations of a RangedSummarizedExperiment object</td></tr>
<tr><td style="width: 25%;"><a href="intra-range-methods.html">shift-method</a></td>
<td>Intra range transformations of a RangedSummarizedExperiment object</td></tr>
<tr><td style="width: 25%;"><a href="SummarizedExperiment-class.html">show-method</a></td>
<td>SummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="Assays-class.html">SimpleListAssays</a></td>
<td>Assays objects</td></tr>
<tr><td style="width: 25%;"><a href="Assays-class.html">SimpleListAssays-class</a></td>
<td>Assays objects</td></tr>
<tr><td style="width: 25%;"><a href="RangedSummarizedExperiment-class.html">sort-method</a></td>
<td>RangedSummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="RangedSummarizedExperiment-class.html">split-method</a></td>
<td>RangedSummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="RangedSummarizedExperiment-class.html">start-method</a></td>
<td>RangedSummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="RangedSummarizedExperiment-class.html">start<--method</a></td>
<td>RangedSummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="RangedSummarizedExperiment-class.html">strand-method</a></td>
<td>RangedSummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="RangedSummarizedExperiment-class.html">strand<--method</a></td>
<td>RangedSummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="RangedSummarizedExperiment-class.html">subset-method</a></td>
<td>RangedSummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="RangedSummarizedExperiment-class.html">SummarizedExperiment</a></td>
<td>RangedSummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="SummarizedExperiment-class.html">SummarizedExperiment-class</a></td>
<td>SummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="RangedSummarizedExperiment-class.html">SummarizedExperiment-method</a></td>
<td>RangedSummarizedExperiment objects</td></tr>
</table>
<h2><a name="T">-- T --</a></h2>
<table width="100%">
<tr><td style="width: 25%;"><a href="intra-range-methods.html">trim-method</a></td>
<td>Intra range transformations of a RangedSummarizedExperiment object</td></tr>
</table>
<h2><a name="U">-- U --</a></h2>
<table width="100%">
<tr><td style="width: 25%;"><a href="RangedSummarizedExperiment-class.html">updateObject-method</a></td>
<td>RangedSummarizedExperiment objects</td></tr>
</table>
<h2><a name="W">-- W --</a></h2>
<table width="100%">
<tr><td style="width: 25%;"><a href="RangedSummarizedExperiment-class.html">width-method</a></td>
<td>RangedSummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="RangedSummarizedExperiment-class.html">width<--method</a></td>
<td>RangedSummarizedExperiment objects</td></tr>
</table>
<h2><a name="misc">-- misc --</a></h2>
<table width="100%">
<tr><td style="width: 25%;"><a href="SummarizedExperiment-class.html">$-method</a></td>
<td>SummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="SummarizedExperiment-class.html">$<--method</a></td>
<td>SummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="Assays-class.html">[-method</a></td>
<td>Assays objects</td></tr>
<tr><td style="width: 25%;"><a href="SummarizedExperiment-class.html">[-method</a></td>
<td>SummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="Assays-class.html">[<--method</a></td>
<td>Assays objects</td></tr>
<tr><td style="width: 25%;"><a href="SummarizedExperiment-class.html">[<--method</a></td>
<td>SummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="Assays-class.html">[[-method</a></td>
<td>Assays objects</td></tr>
<tr><td style="width: 25%;"><a href="SummarizedExperiment-class.html">[[-method</a></td>
<td>SummarizedExperiment objects</td></tr>
<tr><td style="width: 25%;"><a href="Assays-class.html">[[<--method</a></td>
<td>Assays objects</td></tr>
<tr><td style="width: 25%;"><a href="SummarizedExperiment-class.html">[[<--method</a></td>
<td>SummarizedExperiment objects</td></tr>
</table>
</body></html>
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