/usr/lib/R/site-library/SummarizedExperiment/scripts/Find_and_update_objects/data_store_RDA_OBJECTS_TO_UPDATE is in r-bioc-summarizedexperiment 1.8.0-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 | # This file contains the list of rda objects to update located in
# https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/data_store
# It was obtained by running STEPS 1 & 2 & 3 of the "Find and update objects"
# procedure on May 26, 2015. See README file for more information.
# To update the objects listed in this file:
# 1. Get a working copy of the above URL.
# 2. Copy this file to the working copy and rename it RDA_OBJECTS_TO_UPDATE.
# 3. Run STEP 4 (see README file for more information).
./geuvPack/data/geuFPKM.rda geuFPKM SummarizedExperiment GenomicRanges
./bsseqData/data/BS.cancer.ex.fit.rda BS.cancer.ex.fit BSseq bsseq
./bsseqData/data/BS.cancer.ex.rda BS.cancer.ex BSseq bsseq
./fission/data/fission.RData fission SummarizedExperiment GenomicRanges
./DREAM4/data/dream4_010_04.RData dream4_010_04 SummarizedExperiment GenomicRanges
./DREAM4/data/dream4_100_01.RData dream4_100_01 SummarizedExperiment GenomicRanges
./DREAM4/data/dream4_010_01.RData dream4_010_01 SummarizedExperiment GenomicRanges
./DREAM4/data/dream4_010_05.RData dream4_010_05 SummarizedExperiment GenomicRanges
./DREAM4/data/dream4_010_02.RData dream4_010_02 SummarizedExperiment GenomicRanges
./DREAM4/data/dream4_100_04.RData dream4_100_04 SummarizedExperiment GenomicRanges
./DREAM4/data/dream4_010_03.RData dream4_010_03 SummarizedExperiment GenomicRanges
./DREAM4/data/dream4_100_05.RData dream4_100_05 SummarizedExperiment GenomicRanges
./DREAM4/data/dream4_100_02.RData dream4_100_02 SummarizedExperiment GenomicRanges
./DREAM4/data/dream4_100_03.RData dream4_100_03 SummarizedExperiment GenomicRanges
./COSMIC.67/data/cosmic_67.rda cosmic_67 CollapsedVCF VariantAnnotation
./parathyroidSE/data/parathyroidGenesSE.RData parathyroidGenesSE SummarizedExperiment GenomicRanges
./parathyroidSE/data/parathyroidExonsSE.RData parathyroidExonsSE SummarizedExperiment GenomicRanges
./RRBSdata/data/rrbs.RData rrbs BSraw BiSeq
./airway/data/airway.RData airway SummarizedExperiment GenomicRanges
./dsQTL/data/DSQ_2.rda DSQ_2 SummarizedExperiment GenomicRanges
./dsQTL/data/DSQ_17.rda DSQ_17 SummarizedExperiment GenomicRanges
./dsQTL/data/DHStop5_hg19.rda DHStop5_hg19 SummarizedExperiment GenomicRanges
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