/usr/lib/R/site-library/coda/NAMESPACE is in r-cran-coda 0.19-1-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 | ## export functions
export(
acfplot,
HPDinterval,
as.array.mcmc.list,
as.mcmc,
as.mcmc.list,
autocorr,
##RGA
autocorr.diag,
autocorr.plot,
##RGA
batchSE,
bugs2jags,
chanames,
coda.options,
codamenu,
crosscorr,
crosscorr.plot,
cumuplot,
densplot,
display.coda.options,
effectiveSize,
gelman.diag,
gelman.plot,
geweke.diag,
geweke.plot,
heidel.diag,
is.mcmc,
is.mcmc.list,
mcmc,
mcmc.list,
mcmcUpgrade,
mcpar,
multi.menu,
nchain,
niter,
nvar,
pcramer,
raftery.diag,
read.and.check,
read.coda.interactive,
read.coda,
read.jags,
read.openbugs,
##RGA
rejectionRate,
spectrum0,
spectrum0.ar,
thin,
traceplot,
varnames,
"varnames<-")
## export data
# export(line)
# this doesn't need to be exported, not sure why, but it works fine
# as is.
# [1] [.mcmc as.matrix.mcmc end.mcmc frequency.mcmc plot.mcmc
# [6] print.mcmc start.mcmc summary.mcmc thin.mcmc time.mcmc
# [11] window.mcmc
# [1] [.mcmc.list as.matrix.mcmc.list as.mcmc.mcmc.list
# [4] end.mcmc.list plot.mcmc.list start.mcmc.list
# [7] summary.mcmc.list thin.mcmc.list time.mcmc.list
# [10] window.mcmc.list
## register S3 methods
S3method(as.mcmc, default)
S3method(as.mcmc.list, default)
S3method(as.ts, mcmc)
## as.matrix
S3method(as.matrix, mcmc)
S3method(as.matrix, mcmc.list)
## mcmc
S3method("[", mcmc)
S3method(end, mcmc)
S3method(frequency, mcmc)
S3method(plot, mcmc)
S3method(print, mcmc)
S3method(start, mcmc)
S3method(summary, mcmc)
S3method(thin, mcmc)
S3method(time, mcmc)
S3method(window, mcmc)
S3method(head, mcmc)
S3method(tail, mcmc)
##RGA
S3method(autocorr.diag, mcmc)
S3method(rejectionRate, mcmc)
S3method(batchSE,mcmc)
S3method(as.data.frame,mcmc)
##DMB
S3method(HPDinterval, mcmc)
## mcmc.list
S3method("[", mcmc.list)
S3method(as.matrix, mcmc.list)
S3method(as.mcmc, mcmc.list)
S3method(as.array, mcmc.list)
S3method(end, mcmc.list)
S3method(plot, mcmc.list)
S3method(start, mcmc.list)
S3method(summary, mcmc.list)
S3method(thin, mcmc.list)
S3method(time, mcmc.list)
S3method(window, mcmc.list)
S3method(head, mcmc.list)
S3method(tail, mcmc.list)
##RGA
S3method(autocorr.diag, mcmc.list)
S3method(rejectionRate, mcmc.list)
S3method(batchSE,mcmc.list)
##DMB
S3method(HPDinterval, mcmc.list)
## misc
S3method(print, gelman.diag)
S3method(print, geweke.diag)
S3method(print, heidel.diag)
S3method(print, raftery.diag)
S3method(print, summary.mcmc)
## Imports
importFrom(grDevices, dev.cur, dev.interactive, dev.off, postscript,
topo.colors, nclass.Sturges)
importFrom(graphics, abline, axis, hist, legend, lines, matplot, par,
plot, polygon, text, title, barplot)
importFrom(lattice, xyplot, qqmath, densityplot, levelplot,
panel.abline, panel.xyplot, trellis.par.get, do.breaks,
panel.superpose, prepanel.qqmathline, splom)
importFrom(stats, Gamma, IQR, acf, aggregate, ar, as.formula, as.ts,
cor, density, end, fft, frequency, glm, lm, lowess, predict, qf,
qnorm, quantile, residuals, sd, start, time, ts, var, window)
importFrom(utils, head, menu, read.table, tail)
## lattice methods
S3method(xyplot, mcmc)
S3method(qqmath, mcmc)
S3method(densityplot, mcmc)
S3method(acfplot, mcmc)
S3method(levelplot, mcmc)
S3method(xyplot, mcmc.list)
S3method(qqmath, mcmc.list)
S3method(densityplot, mcmc.list)
S3method(acfplot, mcmc.list)
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