/usr/share/perl5/KronaTools/data/README is in radiant 2.7+dfsg-1.
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This file is a list of short names of all Enzyme Commission categories. It was
generated from data downloaded from the Integrated Microbial Genomes Human
Microbiome Project. To recreate this file:
- Download the tab-delimited list of EC names:
- Navigate to:
http://www.hmpdacc-resources.org/cgi-bin/imgm_hmp/main.cgi?section=FindFunctions&page=enzymeList
- Choose "Select All"
- Choose "Export"
- Run:
<KronaTools>/scripts/formatEC.pl <download_file> > <output>
The formatEC.pl script converts the format so it is easier to parse and removes
redundant descriptions from group names. For example:
EC:1.- Oxidoreductases.
EC:1.1.- Oxidoreductases. Acting on the CH-OH group of donors.
...becomes:
1 Oxidoreductases
1.1 Acting on the CH-OH group of donors
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