/usr/share/doc/rapmap/run-unit-test is in rapmap-example-data 0.5.0+dfsg-3.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 | #!/bin/bash
set -e
pkg="rapmap"
if [ "$AUTOPKGTEST_TMP" = "" ] ; then
AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM
fi
cp -a /usr/share/doc/${pkg}/examples/* $AUTOPKGTEST_TMP
cd $AUTOPKGTEST_TMP
gunzip -r *
rapmap quasiindex -t transcripts.fasta -i sample_quasi_index
rapmap quasiindex --perfectHash -t transcripts.fasta -i sample_quasi_index_ph
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