ruby-bio 1.5.0-2ubuntu1 / usr / lib / ruby

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/usr/lib/ruby/ is in ruby-bio 1.5.0-2ubuntu1.

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File Mime Type Owner Mode Size
..
/usr/lib/ruby/vendor_ruby/ root:root 0o755
/usr/lib/ruby/vendor_ruby/bio/ root:root 0o755
/usr/lib/ruby/vendor_ruby/bio/alignment.rb text/x-ruby root:root 0o644 73.3 KB
/usr/lib/ruby/vendor_ruby/bio/appl/ root:root 0o755
/usr/lib/ruby/vendor_ruby/bio/appl/bl2seq/ root:root 0o755
/usr/lib/ruby/vendor_ruby/bio/appl/bl2seq/report.rb text/x-c++ root:root 0o644 4.4 KB
/usr/lib/ruby/vendor_ruby/bio/appl/blast/ root:root 0o755
/usr/lib/ruby/vendor_ruby/bio/appl/blast/format0.rb text/x-ruby root:root 0o644 43.9 KB
/usr/lib/ruby/vendor_ruby/bio/appl/blast/format8.rb text/x-ruby root:root 0o644 1.9 KB
/usr/lib/ruby/vendor_ruby/bio/appl/blast/genomenet.rb text/x-ruby root:root 0o644 9.1 KB
/usr/lib/ruby/vendor_ruby/bio/appl/blast/ncbioptions.rb text/x-c++ root:root 0o644 5.5 KB
/usr/lib/ruby/vendor_ruby/bio/appl/blast/remote.rb text/x-c++ root:root 0o644 2.7 KB
/usr/lib/ruby/vendor_ruby/bio/appl/blast/report.rb text/x-c++ root:root 0o644 17.2 KB
/usr/lib/ruby/vendor_ruby/bio/appl/blast/rexml.rb text/x-ruby root:root 0o644 4.1 KB
/usr/lib/ruby/vendor_ruby/bio/appl/blast/rpsblast.rb text/x-c++ root:root 0o644 8.9 KB
/usr/lib/ruby/vendor_ruby/bio/appl/blast/wublast.rb text/x-ruby root:root 0o644 14.2 KB
/usr/lib/ruby/vendor_ruby/bio/appl/blast/xmlparser.rb text/x-c++ root:root 0o644 6.8 KB
/usr/lib/ruby/vendor_ruby/bio/appl/blast.rb text/x-ruby root:root 0o644 15.1 KB
/usr/lib/ruby/vendor_ruby/bio/appl/blat/ root:root 0o755
/usr/lib/ruby/vendor_ruby/bio/appl/blat/report.rb text/x-ruby root:root 0o644 17.7 KB
/usr/lib/ruby/vendor_ruby/bio/appl/clustalw/ root:root 0o755
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/usr/lib/ruby/vendor_ruby/bio/appl/clustalw.rb text/x-ruby root:root 0o644 6.0 KB
/usr/lib/ruby/vendor_ruby/bio/appl/emboss.rb text/x-c++ root:root 0o644 6.1 KB
/usr/lib/ruby/vendor_ruby/bio/appl/fasta/ root:root 0o755
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/usr/lib/ruby/vendor_ruby/bio/appl/fasta.rb text/x-c++ root:root 0o644 5.8 KB
/usr/lib/ruby/vendor_ruby/bio/appl/gcg/ root:root 0o755
/usr/lib/ruby/vendor_ruby/bio/appl/gcg/msf.rb text/x-ruby root:root 0o644 5.1 KB
/usr/lib/ruby/vendor_ruby/bio/appl/gcg/seq.rb text/x-ruby root:root 0o644 5.4 KB
/usr/lib/ruby/vendor_ruby/bio/appl/genscan/ root:root 0o755
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/usr/lib/ruby/vendor_ruby/bio/appl/hmmer/ root:root 0o755
/usr/lib/ruby/vendor_ruby/bio/appl/hmmer/report.rb text/x-c++ root:root 0o644 14.2 KB
/usr/lib/ruby/vendor_ruby/bio/appl/hmmer.rb text/x-c++ root:root 0o644 2.1 KB
/usr/lib/ruby/vendor_ruby/bio/appl/iprscan/ root:root 0o755
/usr/lib/ruby/vendor_ruby/bio/appl/iprscan/report.rb text/x-ruby root:root 0o644 11.7 KB
/usr/lib/ruby/vendor_ruby/bio/appl/mafft/ root:root 0o755
/usr/lib/ruby/vendor_ruby/bio/appl/mafft/report.rb text/x-ruby root:root 0o644 6.5 KB
/usr/lib/ruby/vendor_ruby/bio/appl/mafft.rb text/x-ruby root:root 0o644 7.1 KB
/usr/lib/ruby/vendor_ruby/bio/appl/meme/ root:root 0o755
/usr/lib/ruby/vendor_ruby/bio/appl/meme/mast/ root:root 0o755
/usr/lib/ruby/vendor_ruby/bio/appl/meme/mast/report.rb text/x-ruby root:root 0o644 2.5 KB
/usr/lib/ruby/vendor_ruby/bio/appl/meme/mast.rb text/x-ruby root:root 0o644 4.2 KB
/usr/lib/ruby/vendor_ruby/bio/appl/meme/motif.rb text/x-ruby root:root 0o644 1.0 KB
/usr/lib/ruby/vendor_ruby/bio/appl/muscle.rb text/x-ruby root:root 0o644 1.4 KB
/usr/lib/ruby/vendor_ruby/bio/appl/paml/ root:root 0o755
/usr/lib/ruby/vendor_ruby/bio/appl/paml/baseml/ root:root 0o755
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/usr/lib/ruby/vendor_ruby/bio/appl/paml/baseml.rb text/x-ruby root:root 0o644 2.7 KB
/usr/lib/ruby/vendor_ruby/bio/appl/paml/codeml/ root:root 0o755
/usr/lib/ruby/vendor_ruby/bio/appl/paml/codeml/rates.rb text/x-ruby root:root 0o644 1.9 KB
/usr/lib/ruby/vendor_ruby/bio/appl/paml/codeml/report.rb text/x-ruby root:root 0o644 17.5 KB
/usr/lib/ruby/vendor_ruby/bio/appl/paml/codeml.rb text/x-ruby root:root 0o644 8.1 KB
/usr/lib/ruby/vendor_ruby/bio/appl/paml/common.rb text/x-ruby root:root 0o644 11.1 KB
/usr/lib/ruby/vendor_ruby/bio/appl/paml/common_report.rb text/x-ruby root:root 0o644 844 bytes
/usr/lib/ruby/vendor_ruby/bio/appl/paml/yn00/ root:root 0o755
/usr/lib/ruby/vendor_ruby/bio/appl/paml/yn00/report.rb text/x-ruby root:root 0o644 644 bytes
/usr/lib/ruby/vendor_ruby/bio/appl/paml/yn00.rb text/x-ruby root:root 0o644 2.8 KB
/usr/lib/ruby/vendor_ruby/bio/appl/phylip/ root:root 0o755
/usr/lib/ruby/vendor_ruby/bio/appl/phylip/alignment.rb text/x-ruby root:root 0o644 3.4 KB
/usr/lib/ruby/vendor_ruby/bio/appl/phylip/distance_matrix.rb text/x-ruby root:root 0o644 2.6 KB
/usr/lib/ruby/vendor_ruby/bio/compat/ root:root 0o755
/usr/lib/ruby/vendor_ruby/bio/appl/probcons.rb text/x-ruby root:root 0o644 1.2 KB
/usr/lib/ruby/vendor_ruby/bio/appl/psort/ root:root 0o755
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/usr/lib/ruby/vendor_ruby/bio/appl/psort.rb text/x-ruby root:root 0o644 12.1 KB
/usr/lib/ruby/vendor_ruby/bio/appl/pts1.rb text/x-c++ root:root 0o644 6.1 KB
/usr/lib/ruby/vendor_ruby/bio/appl/sim4/ root:root 0o755
/usr/lib/ruby/vendor_ruby/bio/appl/sim4/report.rb text/x-ruby root:root 0o644 17.3 KB
/usr/lib/ruby/vendor_ruby/bio/appl/sim4.rb text/x-ruby root:root 0o644 3.3 KB
/usr/lib/ruby/vendor_ruby/bio/appl/sosui/ root:root 0o755
/usr/lib/ruby/vendor_ruby/bio/appl/sosui/report.rb text/x-ruby root:root 0o644 2.2 KB
/usr/lib/ruby/vendor_ruby/bio/appl/spidey/ root:root 0o755
/usr/lib/ruby/vendor_ruby/bio/appl/spidey/report.rb text/x-ruby root:root 0o644 19.0 KB
/usr/lib/ruby/vendor_ruby/bio/appl/targetp/ root:root 0o755
/usr/lib/ruby/vendor_ruby/bio/appl/targetp/report.rb text/x-ruby root:root 0o644 3.9 KB
/usr/lib/ruby/vendor_ruby/bio/appl/tcoffee.rb text/x-ruby root:root 0o644 1.5 KB
/usr/lib/ruby/vendor_ruby/bio/appl/tmhmm/ root:root 0o755
/usr/lib/ruby/vendor_ruby/bio/appl/tmhmm/report.rb text/x-ruby root:root 0o644 4.3 KB
/usr/lib/ruby/vendor_ruby/bio/command.rb text/x-ruby root:root 0o644 28.1 KB
/usr/lib/ruby/vendor_ruby/bio/compat/features.rb text/x-c++ root:root 0o644 4.5 KB
/usr/lib/ruby/vendor_ruby/bio/compat/references.rb text/x-ruby root:root 0o644 3.6 KB
/usr/lib/ruby/vendor_ruby/bio/data/ root:root 0o755
/usr/lib/ruby/vendor_ruby/bio/data/aa.rb text/x-c++ root:root 0o644 4.6 KB
/usr/lib/ruby/vendor_ruby/bio/data/codontable.rb text/x-c++ root:root 0o644 23.1 KB
/usr/lib/ruby/vendor_ruby/bio/data/na.rb text/x-c++ root:root 0o644 3.6 KB
/usr/lib/ruby/vendor_ruby/bio/db/ root:root 0o755
/usr/lib/ruby/vendor_ruby/bio/db/aaindex.rb text/x-ruby root:root 0o644 7.0 KB
/usr/lib/ruby/vendor_ruby/bio/db/biosql/ root:root 0o755
/usr/lib/ruby/vendor_ruby/bio/db/biosql/biosql_to_biosequence.rb text/x-ruby root:root 0o644 1.7 KB
/usr/lib/ruby/vendor_ruby/bio/db/biosql/sequence.rb text/x-ruby root:root 0o644 17.4 KB
/usr/lib/ruby/vendor_ruby/bio/db/embl/ root:root 0o755
/usr/lib/ruby/vendor_ruby/bio/db/embl/common.rb text/x-c++ root:root 0o644 9.5 KB
/usr/lib/ruby/vendor_ruby/bio/db/embl/embl.rb text/x-c++ root:root 0o644 13.1 KB
/usr/lib/ruby/vendor_ruby/bio/db/kegg/drug.rb text/x-c++ root:root 0o644 2.7 KB
/usr/lib/ruby/vendor_ruby/bio/db/embl/embl_to_biosequence.rb text/x-ruby root:root 0o644 1.7 KB
/usr/lib/ruby/vendor_ruby/bio/db/embl/format_embl.rb text/x-ruby root:root 0o644 5.7 KB
/usr/lib/ruby/vendor_ruby/bio/db/embl/sptr.rb text/x-ruby root:root 0o644 552 bytes
/usr/lib/ruby/vendor_ruby/bio/db/embl/swissprot.rb text/x-c++ root:root 0o644 542 bytes
/usr/lib/ruby/vendor_ruby/bio/db/embl/trembl.rb text/x-c++ root:root 0o644 523 bytes
/usr/lib/ruby/vendor_ruby/bio/db/embl/uniprot.rb text/x-ruby root:root 0o644 640 bytes
/usr/lib/ruby/vendor_ruby/bio/db/embl/uniprotkb.rb text/x-c++ root:root 0o644 40.6 KB
/usr/lib/ruby/vendor_ruby/bio/db/fantom.rb text/x-ruby root:root 0o644 15.1 KB
/usr/lib/ruby/vendor_ruby/bio/db/fasta/ root:root 0o755
/usr/lib/ruby/vendor_ruby/bio/db/fasta/defline.rb text/x-ruby root:root 0o644 16.4 KB
/usr/lib/ruby/vendor_ruby/bio/db/fasta/fasta_to_biosequence.rb text/x-ruby root:root 0o644 1.5 KB
/usr/lib/ruby/vendor_ruby/bio/db/fasta/format_fasta.rb text/x-ruby root:root 0o644 2.8 KB
/usr/lib/ruby/vendor_ruby/bio/db/fasta/format_qual.rb text/x-ruby root:root 0o644 6.1 KB
/usr/lib/ruby/vendor_ruby/bio/db/fasta/qual.rb text/x-ruby root:root 0o644 3.4 KB
/usr/lib/ruby/vendor_ruby/bio/db/fasta/qual_to_biosequence.rb text/x-ruby root:root 0o644 758 bytes
/usr/lib/ruby/vendor_ruby/bio/db/fasta.rb text/x-ruby root:root 0o644 9.2 KB
/usr/lib/ruby/vendor_ruby/bio/db/fastq/ root:root 0o755
/usr/lib/ruby/vendor_ruby/bio/db/fastq/fastq_to_biosequence.rb text/x-ruby root:root 0o644 900 bytes
/usr/lib/ruby/vendor_ruby/bio/db/fastq/format_fastq.rb text/x-ruby root:root 0o644 5.3 KB
/usr/lib/ruby/vendor_ruby/bio/db/fastq.rb text/x-c++ root:root 0o644 18.1 KB
/usr/lib/ruby/vendor_ruby/bio/db/genbank/ root:root 0o755
/usr/lib/ruby/vendor_ruby/bio/db/genbank/common.rb text/x-c++ root:root 0o644 7.5 KB
/usr/lib/ruby/vendor_ruby/bio/db/genbank/ddbj.rb text/x-c++ root:root 0o644 524 bytes
/usr/lib/ruby/vendor_ruby/bio/db/genbank/format_genbank.rb text/x-ruby root:root 0o644 5.3 KB
/usr/lib/ruby/vendor_ruby/bio/db/genbank/genbank.rb text/x-c++ root:root 0o644 4.1 KB
/usr/lib/ruby/vendor_ruby/bio/db/genbank/genbank_to_biosequence.rb text/x-ruby root:root 0o644 1.8 KB
/usr/lib/ruby/vendor_ruby/bio/db/genbank/genpept.rb text/x-c++ root:root 0o644 1.2 KB
/usr/lib/ruby/vendor_ruby/bio/db/genbank/refseq.rb text/x-c++ root:root 0o644 533 bytes
/usr/lib/ruby/vendor_ruby/bio/db/gff.rb text/x-ruby root:root 0o644 60.2 KB
/usr/lib/ruby/vendor_ruby/bio/db/go.rb text/x-c++ root:root 0o644 9.8 KB
/usr/lib/ruby/vendor_ruby/bio/db/kegg/ root:root 0o755
/usr/lib/ruby/vendor_ruby/bio/db/kegg/brite.rb text/x-c++ root:root 0o644 639 bytes
/usr/lib/ruby/vendor_ruby/bio/db/kegg/common.rb text/x-c++ root:root 0o644 6.6 KB
/usr/lib/ruby/vendor_ruby/bio/db/kegg/compound.rb text/x-c++ root:root 0o644 2.5 KB
/usr/lib/ruby/vendor_ruby/bio/db/kegg/enzyme.rb text/x-c++ root:root 0o644 2.9 KB
/usr/lib/ruby/vendor_ruby/bio/db/kegg/expression.rb text/x-c++ root:root 0o644 3.0 KB
/usr/lib/ruby/vendor_ruby/bio/db/kegg/genes.rb text/x-c++ root:root 0o644 9.3 KB
/usr/lib/ruby/vendor_ruby/bio/db/kegg/genome.rb text/x-c++ root:root 0o644 4.8 KB
/usr/lib/ruby/vendor_ruby/bio/db/kegg/glycan.rb text/x-c++ root:root 0o644 3.0 KB
/usr/lib/ruby/vendor_ruby/bio/db/kegg/keggtab.rb text/x-c++ root:root 0o644 8.9 KB
/usr/lib/ruby/vendor_ruby/bio/db/kegg/kgml.rb text/x-c++ root:root 0o644 16.8 KB
/usr/lib/ruby/vendor_ruby/bio/db/kegg/module.rb text/x-c++ root:root 0o644 3.5 KB
/usr/lib/ruby/vendor_ruby/bio/db/kegg/orthology.rb text/x-c++ root:root 0o644 3.2 KB
/usr/lib/ruby/vendor_ruby/bio/db/kegg/pathway.rb text/x-c++ root:root 0o644 6.2 KB
/usr/lib/ruby/vendor_ruby/bio/db/kegg/reaction.rb text/x-c++ root:root 0o644 3.1 KB
/usr/lib/ruby/vendor_ruby/bio/db/lasergene.rb text/x-c++ root:root 0o644 8.8 KB
/usr/lib/ruby/vendor_ruby/bio/db/litdb.rb text/x-ruby root:root 0o644 1.4 KB
/usr/lib/ruby/vendor_ruby/bio/db/medline.rb text/x-c++ root:root 0o644 7.4 KB
/usr/lib/ruby/vendor_ruby/bio/db/nbrf.rb text/x-ruby root:root 0o644 5.2 KB
/usr/lib/ruby/vendor_ruby/bio/db/newick.rb text/x-ruby root:root 0o644 11.9 KB
/usr/lib/ruby/vendor_ruby/bio/db/nexus.rb text/x-ruby root:root 0o644 54.9 KB
/usr/lib/ruby/vendor_ruby/bio/db/pdb/ root:root 0o755
/usr/lib/ruby/vendor_ruby/bio/db/pdb/atom.rb text/x-ruby root:root 0o644 1.7 KB
/usr/lib/ruby/vendor_ruby/bio/db/pdb/chain.rb text/x-ruby root:root 0o644 5.6 KB
/usr/lib/ruby/vendor_ruby/bio/db/pdb/chemicalcomponent.rb text/x-ruby root:root 0o644 6.6 KB
/usr/lib/ruby/vendor_ruby/bio/db/pdb/model.rb text/x-ruby root:root 0o644 3.6 KB
/usr/lib/ruby/vendor_ruby/bio/db/pdb/pdb.rb text/x-ruby root:root 0o644 62.6 KB
/usr/lib/ruby/vendor_ruby/bio/db/pdb/residue.rb text/x-ruby root:root 0o644 4.1 KB
/usr/lib/ruby/vendor_ruby/bio/db/pdb/utils.rb text/x-c++ root:root 0o644 10.1 KB
/usr/lib/ruby/vendor_ruby/bio/db/pdb.rb text/x-ruby root:root 0o644 517 bytes
/usr/lib/ruby/vendor_ruby/bio/db/phyloxml/ root:root 0o755
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/usr/lib/ruby/vendor_ruby/bio/db/phyloxml/phyloxml_elements.rb text/x-ruby root:root 0o644 37.3 KB
/usr/lib/ruby/vendor_ruby/bio/db/phyloxml/phyloxml_parser.rb text/x-ruby root:root 0o644 29.7 KB
/usr/lib/ruby/vendor_ruby/bio/db/phyloxml/phyloxml_writer.rb text/x-ruby root:root 0o644 6.5 KB
/usr/lib/ruby/vendor_ruby/bio/db/prosite.rb text/x-c++ root:root 0o644 11.0 KB
/usr/lib/ruby/vendor_ruby/bio/db/rebase.rb text/x-c++ root:root 0o644 13.8 KB
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/usr/lib/ruby/vendor_ruby/bio/db/sanger_chromatogram/chromatogram.rb text/x-ruby root:root 0o644 5.5 KB
/usr/lib/ruby/vendor_ruby/bio/db/sanger_chromatogram/chromatogram_to_biosequence.rb text/x-ruby root:root 0o644 803 bytes
/usr/lib/ruby/vendor_ruby/bio/db/sanger_chromatogram/scf.rb text/x-ruby root:root 0o644 7.4 KB
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