This file is indexed.

/usr/share/sagemath/bin/sage-cleaner is in sagemath-common 8.1-7ubuntu1.

This file is owned by root:root, with mode 0o755.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
#!/usr/bin/env python

#*****************************************************************************
# This is the sage monitor *daemon*, which cleans up after Sage.
# Some things that it cleans up:
#   * $DOT_SAGE/temp/HOSTNAME/pid directories
#   * Processes that Sage spawns.  If a copy of Sage isn't
#     running, then any process it spawned should have its
#     process group killed
#*****************************************************************************
#       Copyright (C) 2005, 2006, 2007 William Stein <wstein@gmail.com>
#
#  Distributed under the terms of the GNU General Public License (GPL)
#  as published by the Free Software Foundation; either version 2 of
#  the License, or (at your option) any later version.
#                  http://www.gnu.org/licenses/
#*****************************************************************************


import os, shutil, sys, time, socket, errno, signal, atexit


HOSTNAME = os.environ.get('HOSTNAME', socket.gethostname())
DOT_SAGE = os.environ['DOT_SAGE']

SAGE_TMP_ROOT = os.path.join(DOT_SAGE, 'temp', HOSTNAME)
logfile = os.path.join(SAGE_TMP_ROOT, 'cleaner.log')
pidfile = os.path.join(SAGE_TMP_ROOT, 'cleaner.pid')
# pidfile used by earlier versions of sage-cleaner (before #15457)
old_pidfile = os.path.join(DOT_SAGE, 'temp', 'cleaner-%s.pid'%HOSTNAME)

import logging
logger = logging.getLogger(__name__)


def mkdir_p(path):
    """
    A "mkdir -p" command that makes intermediate directories if necessary
    """
    try:
        os.makedirs(path)
    except OSError as e:
        if not os.path.isdir(path):
            raise


def rm_rf(file_or_path):
    """
    Force recursive delete, ignoring errors.
    """
    try:
        os.unlink(file_or_path)
    except OSError as e:
        if e.errno == errno.EISDIR or e.errno == errno.EPERM:
            shutil.rmtree(file_or_path, ignore_errors=True)


def is_running(pid):
    """
    Return True if and only if there is a process with id pid running.
    """
    try:
        os.kill(pid,0)
        return True
    except OSError:
        return False


def cleanup():
    tmp_dirs = os.listdir(SAGE_TMP_ROOT)
    try:
        tmp_dirs.remove('cleaner.pid')
        tmp_dirs.remove('cleaner.log')
    except ValueError:
        logger.error('No cleaner pid/log in SAGE_TMP_ROOT')
    # Convert strings to integers
    pid_list = []
    for dir_entry in tmp_dirs:
        try:
            pid_list.append(int(dir_entry))
        except ValueError:
            badfile = os.path.join(SAGE_TMP_ROOT, dir_entry)
            logger.warning('File %s must not be in SAGE_TMP_ROOT, deleting', badfile)
            rm_rf(badfile)

    logger.info("Checking PIDs %s", pid_list)
    for parent_pid in pid_list:
        try:
            if not is_running(parent_pid):
                logger.info("Process %s is no longer running, so we clean up", parent_pid)
                dir_name = os.path.join(SAGE_TMP_ROOT, str(parent_pid))
                spawned_processes = os.path.join(dir_name, 'spawned_processes')
                if not os.path.isfile(spawned_processes) \
                   or kill_spawned_jobs(spawned_processes, parent_pid):
                    logger.info('Deleting %s', dir_name)
                    rm_rf(dir_name)
        except Exception:
            logger.error("Exception while cleaning up PID %s:", parent_pid, exc_info=True)

    return len(pid_list)

def kill_spawned_jobs(jobfile, parent_pid):
    logger.info("Killing %s's spawned jobs", parent_pid)
    killed_them_all = True
    for job in open(jobfile).readlines():
        try:
            pid, cmd = job.strip().split(' ', 1)
            pid = int(pid)
            logger.info("--> Killing %r with PID %s and parent PID %s", cmd, pid, parent_pid)
        except Exception:
            logger.error("Exception while processing job %r from %s, ignoring", job, jobfile)
            continue
        try:
            pgrp = os.getpgid(pid)
            logger.info("--> Killing process group %s", pgrp)
            os.killpg(pgrp, signal.SIGKILL)
        except OSError:
            pass
        if is_running(pid):
            logger.error("--> Failed to kill %s", pid)
            # try again later
            killed_them_all = False
    return killed_them_all


def exit_handler():
    logger.info("Removing pidfile and logfile")
    rm_rf(pidfile)
    rm_rf(logfile)


def setup_daemon():
    mkdir_p(SAGE_TMP_ROOT)

    logger.setLevel(logging.DEBUG)
    h = logging.StreamHandler()                # log to stderr
    h.setLevel(logging.DEBUG)
    logger.addHandler(h)
    h = logging.FileHandler(filename=logfile)  # log to logfile
    h.setLevel(logging.INFO)
    logger.addHandler(h)

    logger.info("SAGE_TMP_ROOT = %s", SAGE_TMP_ROOT)

    # Check old pidfile (to allow old and new sage-cleaners to peacefully coexist)
    try:
        pid = int(open(old_pidfile).read())
    except (IOError, ValueError):
        pass
    else:
        if is_running(pid):
            logger.info("old sage-cleaner is already running with PID %s, exiting", pid)
            sys.exit(0)

    try:
        pid = int(open(pidfile).read())
    except (IOError, ValueError):
        pass
    else:
        if is_running(pid):
            logger.info("sage-cleaner is already running with PID %s, exiting", pid)
            sys.exit(0)
    with open(pidfile, 'w') as f:
        f.write(str(os.getpid()))  # initialize pid file
    atexit.register(exit_handler)


def fix_old_mistakes():
    """
    Experience is simply the name we give our mistakes.
    """
    # inconsistently escaped hyphens with underscores (http://trac.sagemath.org/14055)
    wrong_hostname = HOSTNAME.replace('-','_').replace('/','_').replace('\\','_')
    wrong_sage_tmp_root = os.path.join(DOT_SAGE, 'temp', wrong_hostname)
    if wrong_sage_tmp_root != SAGE_TMP_ROOT and os.path.exists(wrong_sage_tmp_root):
        logger.warning('Deleting invalid temp dir %s', wrong_sage_tmp_root)
        rm_rf(wrong_sage_tmp_root)

    # SAGE_TMP in DOT_SAGE/tmp instead of DOT_SAGE/temp
    import glob
    old_root =  glob.glob(os.path.join(DOT_SAGE, 'tmp', HOSTNAME+'-*'))
    if wrong_hostname != HOSTNAME:
        old_root += glob.glob(os.path.join(DOT_SAGE, 'tmp', wrong_hostname+'-*'))
    for old_tmp in old_root:
        logger.warning('Deleting invalid temp dir %s', old_tmp)
        rm_rf(old_tmp)

    # PID file before it was moved into SAGE_TMP_ROOT
    rm_rf(old_pidfile)


if __name__ == '__main__':
    setup_daemon()
    fix_old_mistakes()
    logger.info("Starting sage-cleaner with PID %s", os.getpid())

    if len(sys.argv) > 1:
        wait = int(sys.argv[1])
    else:
        wait = 10

    # Initial cleanup, ignore time
    running_sages = cleanup()
    cleanup_time = 0.0
    count = 1

    # In the first 10 iterations, continue anyway (even if there are
    # no Sage processes running) because it can happen that Sage is
    # not yet started.
    while count < 10 or running_sages > 0:
        # Time to wait = "wait" plus 20 times the time of last cleanup().
        # This ensures that sage-cleaner causes a load of at most 5%.
        time.sleep(wait + 20*cleanup_time)
        count += 1
        t0 = time.time()
        running_sages = cleanup()
        cleanup_time = time.time() - t0
        logger.debug("cleanup() #{:d} took {:.2f}s".format(count, cleanup_time))

    logger.info("sage-cleaner is finished")