This package is 59.1 KB.
It is available at http://archive.ubuntu.com/ubuntu/pool/universe/s/srst2/srst2_0.2.0-5_amd64.deb
.
View its full control file here:
debian/control
.
Short Read Sequence Typing for Bacterial Pathogens
This package depends on:
python:any (>= 2.7.5-5~), bowtie2, cd-hit, samtools, python-scipy, python-biopython
.
This package recommends:
python-rpy2
.
This package does not suggest any other package.
This package does not conflict with any other package.
srst2 0.2.0-5 is in ubuntu - bionic / universe. This package's architecture is: amd64.
File | Mime Type | Owner | Mode | Size |
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postinst
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text/x-shellscript | N/A | N/A | 171 bytes |
prerm
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text/x-shellscript | N/A | N/A | 247 bytes |
/usr/
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root:root | 0o755 | ||
/usr/bin/
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root:root | 0o755 | ||
/usr/bin/csv_to_gene_db
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root:root | 0o777 | ||
/usr/bin/get_all_vfdb
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root:root | 0o777 | ||
/usr/bin/get_genus_vfdb
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root:root | 0o777 | ||
/usr/bin/getmlst
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root:root | 0o777 | ||
/usr/bin/slurm_srst2
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root:root | 0o777 | ||
/usr/bin/srst2
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root:root | 0o777 | ||
/usr/bin/VFDB_cdhit_to_csv
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root:root | 0o777 | ||
/usr/bin/VFDBgenus
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root:root | 0o777 | ||
/usr/share/
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/usr/share/doc/
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/usr/share/doc-base/
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/usr/share/doc-base/srst2
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text/plain | root:root | 0o644 | 530 bytes |
/usr/share/doc/srst2/
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/usr/share/doc/srst2/changelog.Debian.gz
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application/gzip | root:root | 0o644 | 527 bytes |
/usr/share/doc/srst2/copyright
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text/plain | root:root | 0o644 | 2.0 KB |
/usr/share/doc/srst2/example.txt.gz
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application/gzip | root:root | 0o644 | 2.3 KB |
/usr/share/doc/srst2/README_database_clustering.html
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text/plain | root:root | 0o644 | 6.7 KB |
/usr/share/doc/srst2/README.html
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text/html | root:root | 0o644 | 69.7 KB |
/usr/share/doc/srst2/tests/
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/usr/share/doc/srst2/tests/test_slurm_srst2.py.gz
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application/gzip | root:root | 0o644 | 789 bytes |
/usr/share/doc/srst2/tests/test_srst2.py.gz
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application/gzip | root:root | 0o644 | 1.5 KB |
/usr/share/man/
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/usr/share/man/man1/
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/usr/share/man/man1/csv_to_gene_db.1.gz
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application/gzip | root:root | 0o644 | 784 bytes |
/usr/share/man/man1/get_all_vfdb.1.gz
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application/gzip | root:root | 0o644 | 413 bytes |
/usr/share/man/man1/get_genus_vfdb.1.gz
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application/gzip | root:root | 0o644 | 435 bytes |
/usr/share/man/man1/getmlst.1.gz
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application/gzip | root:root | 0o644 | 826 bytes |
/usr/share/man/man1/slurm_srst2.1.gz
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application/gzip | root:root | 0o644 | 795 bytes |
/usr/share/man/man1/srst2.1.gz
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application/gzip | root:root | 0o644 | 2.2 KB |
/usr/share/man/man1/VFDB_cdhit_to_csv.1.gz
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application/gzip | root:root | 0o644 | 560 bytes |
/usr/share/man/man1/VFDBgenus.1.gz
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application/gzip | root:root | 0o644 | 555 bytes |
/usr/share/python/
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/usr/share/python/runtime.d/
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/usr/share/python/runtime.d/srst2.rtupdate
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text/x-shellscript | root:root | 0o755 | 123 bytes |
/usr/share/srst2/
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root:root | 0o755 | ||
/usr/share/srst2/analyseSRST2.py
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text/x-python | root:root | 0o755 | 11.2 KB |
/usr/share/srst2/consensus_alignment.py
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text/x-python | root:root | 0o644 | 2.0 KB |
/usr/share/srst2/database_clustering/
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root:root | 0o755 | ||
/usr/share/srst2/database_clustering/align_plot_tree_min3.py
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text/x-python | root:root | 0o644 | 1.6 KB |
/usr/share/srst2/database_clustering/cdhit_to_csv.py
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text/x-python | root:root | 0o644 | 4.1 KB |
/usr/share/srst2/database_clustering/csv_to_gene_db.py
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text/x-python | root:root | 0o755 | 3.7 KB |
/usr/share/srst2/database_clustering/get_all_vfdb.sh
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text/x-shellscript | root:root | 0o755 | 1.9 KB |
/usr/share/srst2/database_clustering/get_genus_vfdb.sh
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text/x-shellscript | root:root | 0o755 | 1.6 KB |
/usr/share/srst2/database_clustering/VFDB_cdhit_to_csv.py
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text/x-python | root:root | 0o755 | 2.0 KB |
/usr/share/srst2/database_clustering/VFDBgenus.py
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text/x-python | root:root | 0o755 | 1.4 KB |
/usr/share/srst2/getmlst.py
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text/x-python | root:root | 0o755 | 7.0 KB |
/usr/share/srst2/__init__.py
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text/plain | root:root | 0o644 | 2 bytes |
/usr/share/srst2/qsub_srst2.py
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text/x-python | root:root | 0o755 | 10.8 KB |
/usr/share/srst2/slurm_srst2.py
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text/x-python | root:root | 0o755 | 10.8 KB |
/usr/share/srst2/srst2.py
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text/x-python | root:root | 0o755 | 70.2 KB |
/usr/share/srst2/version.py
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text/plain | root:root | 0o644 | 330 bytes |