/usr/share/doc/t-coffee-examples/3d_sample5.aln is in t-coffee-examples 11.00.8cbe486-6.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 | CLUSTAL FORMAT for T-COFFEE Version_7.68 [http://www.tcoffee.org] [MODE: ], CPU=1.03 sec, SCORE=99, Nseq=22, Len=51
2UWI-3A CDS--NS-YCLLK-ASDGNCVTCAPKTK-CGR--GYG--KKGEDEMGNTIC
2UWI-2A CPS--DT-FTSIY-NRSPWCHSCR---GPCGT--NRVEVTPCT-PTTNRIC
2UWI-1A CEQ--GV-SYY-NSQEL-KC--CK---L-CKP--GTYSDHRCD-KYSDTIC
2HEY-4R CPP--GH-FSPGD-N--QACKPWT---N-CTLA-GKHTLQPAS-NSSDAIC
2HEY-2R CGP--GF-YNDVV-S-SKPCKPCT---W-CNLRSGSERKQLCT-ATQDTVC
2HEY-1R CVG--DT-YPSN-----DRC--CH---E-CRP--GNGMVSRCS-RSQNTVC
2RPJ-1A CSR--GS-SWSADLD---KCMDCA---S-CRA--RPHS-DFCL-GC-----
1XU2-1S CSQ--NE-YFDSL---LHACIPCQ--LR-CSS--NT-PPLTCQR-----YC
1XU1-2T CRKEQGK-FYDHL---LRDCISCA--SI-CGQ---HP--KQCAY-----FC
1EXT-4A CHA--GF-FLRE-----NECVSCS---N-CKK--SL----ECTK-----LC
1OQE-1K CVP--AE-CFDL---LVRHCVACG---L-LRTPRPKPA-------------
1EXT-3A CRK--NQ-YRHYWSENLFQCFNCS---L-CLN--GT-VHLSCQ-EKQNTVC
1EXT-2A CES--GS-FTASE-NHLRHCLSCS---K-CRKEMGQVEISSCT-VDRDTVC
1EXT-1A CPQ--GK-YIHPQ-NNSICCTKCH-------K--GTYLYNDCPGPGQDTDC
1SG1-4X CPE--GT-YSDEAN-HVDPCLPCT---V-CED--TERQLRECT-PWADAEC
1SG1-3X CAY--GY-YQDEE---TGHCEACS---V-CEV--GSGLVFSCQ-DKQNTVC
1SG1-2X CLDN-VT-FSDVV-SATEPCKPCT---E-CLG--LQSMSAPCV-EADDAVC
1SG1-1X CST--GL-YTHS----GECCKACN---L------GEGVAQPCG-A-NQTVC
1JMA-2B CPP--GT-YIAHL-NGLSKCLQCQ---M-CDPAMGLRASRNCS-RTENAVC
1JMA-1B CKE--DE-YPVG-----SEC--CP---K-CSP--GYRVKEACG-ELTGTVC
1D4V-3A CEE--GT-FREEDS-P-EMCRKCR--TG-CPR--GMVKVGDCT-PWSDIEC
1D4V-2A CKY--GQDYSTHW-NDLLFCLRCT---R-CDS--GEVELSPCT-TTRNTVC
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