transdecoder 5.0.1-1 / usr

This file is indexed.

/usr/ is in transdecoder 5.0.1-1.

This file is owned by root:root, with mode 0o755.

File Mime Type Owner Mode Size
..
/usr/bin/ root:root 0o755
/usr/lib/ root:root 0o755
/usr/lib/transdecoder/ root:root 0o755
/usr/lib/transdecoder/PerlLib/ root:root 0o755
/usr/lib/transdecoder/PerlLib/DelimParser.pm text/x-perl root:root 0o644 5.3 KB
/usr/lib/transdecoder/PerlLib/Fasta_reader.pm text/x-perl root:root 0o755 3.4 KB
/usr/lib/transdecoder/PerlLib/Fasta_retriever.pm text/plain root:root 0o644 1.5 KB
/usr/lib/transdecoder/PerlLib/GFF3_utils.pm text/x-perl root:root 0o644 8.2 KB
/usr/lib/transdecoder/PerlLib/Gene_obj.pm text/x-perl root:root 0o755 139.4 KB
/usr/lib/transdecoder/PerlLib/Gene_obj_indexer.pm text/x-perl root:root 0o755 1.3 KB
/usr/lib/transdecoder/PerlLib/Longest_orf.pm text/x-perl root:root 0o755 11.4 KB
/usr/lib/transdecoder/PerlLib/Nuc_translator.pm text/x-perl root:root 0o755 10.1 KB
/usr/lib/transdecoder/PerlLib/PWM.pm text/plain root:root 0o644 9.6 KB
/usr/lib/transdecoder/PerlLib/Pipeliner.pm text/plain root:root 0o644 4.7 KB
/usr/lib/transdecoder/PerlLib/Process_cmd.pm text/plain root:root 0o644 485 bytes
/usr/lib/transdecoder/PerlLib/TiedHash.pm text/x-perl root:root 0o755 3.6 KB
/usr/lib/transdecoder/PerlLib/overlapping_nucs.ph text/x-perl root:root 0o755 1.1 KB
/usr/lib/transdecoder/TransDecoder.LongOrfs text/x-perl root:root 0o755 10.4 KB
/usr/lib/transdecoder/TransDecoder.Predict text/x-perl root:root 0o755 13.4 KB
/usr/lib/transdecoder/util/ root:root 0o755
/usr/lib/transdecoder/util/PWM/ root:root 0o755
/usr/lib/transdecoder/util/PWM/README.md text/plain root:root 0o644 2.1 KB
/usr/lib/transdecoder/util/PWM/__deprecated/ root:root 0o755
/usr/lib/transdecoder/util/PWM/__deprecated/build_atgPWM.pl text/x-perl root:root 0o755 3.9 KB
/usr/lib/transdecoder/util/PWM/__deprecated/build_pwm.pl text/x-perl root:root 0o755 1.1 KB
/usr/lib/transdecoder/util/PWM/__deprecated/optimize_atgPWM.pl text/x-perl root:root 0o755 3.7 KB
/usr/lib/transdecoder/util/PWM/__deprecated/optimize_atgPWM_+-.pl text/x-perl root:root 0o755 3.9 KB
/usr/lib/transdecoder/util/PWM/__deprecated/optimize_atgPWM_+-.predict.pl text/x-perl root:root 0o755 5.6 KB
/usr/lib/transdecoder/util/PWM/__deprecated/score_atgPWM.pl text/x-perl root:root 0o755 2.8 KB
/usr/lib/transdecoder/util/PWM/build_atgPWM_+-.pl text/x-perl root:root 0o755 5.5 KB
/usr/lib/transdecoder/util/PWM/compute_AUC.pl text/x-perl root:root 0o755 2.9 KB
/usr/lib/transdecoder/util/PWM/deplete_feature_noise.pl text/x-perl root:root 0o755 5.2 KB
/usr/lib/transdecoder/util/PWM/feature_scores_to_ROC.pl text/x-perl root:root 0o755 2.3 KB
/usr/lib/transdecoder/util/PWM/feature_scoring.+-.pl text/x-perl root:root 0o755 6.0 KB
/usr/lib/transdecoder/util/PWM/make_seqLogo.Rscript text/plain root:root 0o755 403 bytes
/usr/lib/transdecoder/util/PWM/plot_ROC.Rscript text/plain root:root 0o755 437 bytes
/usr/lib/transdecoder/util/PWM/simulate_feature_seq_from_PWM.pl text/x-perl root:root 0o755 980 bytes
/usr/lib/transdecoder/util/__pwm_tests/ root:root 0o755
/usr/lib/transdecoder/util/__pwm_tests/cleanMe.sh text/x-shellscript root:root 0o755 119 bytes
/usr/lib/transdecoder/util/__pwm_tests/longest_orfs.cds.top_longest_5000.nr80.gz application/gzip root:root 0o644 98.7 KB
/usr/lib/transdecoder/util/__pwm_tests/runMe.sh text/x-shellscript root:root 0o755 264 bytes
/usr/lib/transdecoder/util/bin/ root:root 0o755
/usr/lib/transdecoder/util/bin/.hidden application/x-empty root:root 0o644 0 bytes
/usr/lib/transdecoder/util/cdna_alignment_orf_to_genome_orf.pl text/x-perl root:root 0o755 11.3 KB
/usr/lib/transdecoder/util/compute_base_probs.pl text/x-perl root:root 0o755 1.3 KB
/usr/lib/transdecoder/util/cufflinks_gtf_genome_to_cdna_fasta.pl text/x-perl root:root 0o755 2.5 KB
/usr/lib/transdecoder/util/cufflinks_gtf_to_alignment_gff3.pl text/x-perl root:root 0o755 2.1 KB
/usr/lib/transdecoder/util/cufflinks_gtf_to_bed.pl text/x-perl root:root 0o755 2.0 KB
/usr/lib/transdecoder/util/exclude_similar_proteins.pl text/x-perl root:root 0o755 3.4 KB
/usr/lib/transdecoder/util/extract_FL_subset.pl text/x-perl root:root 0o755 3.0 KB
/usr/lib/transdecoder/util/ffindex_resume.pl text/x-perl root:root 0o755 1012 bytes
/usr/lib/transdecoder/util/gene_list_to_gff.pl text/x-perl root:root 0o755 769 bytes
/usr/lib/transdecoder/util/get_FL_accs.pl text/x-perl root:root 0o755 646 bytes
/usr/lib/transdecoder/util/get_longest_ORF_per_transcript.pl text/x-perl root:root 0o755 1.3 KB
/usr/lib/transdecoder/util/get_top_longest_fasta_entries.pl text/x-perl root:root 0o755 969 bytes
/usr/lib/transdecoder/util/gff3_file_to_bed.pl text/x-perl root:root 0o755 901 bytes
/usr/lib/transdecoder/util/gff3_file_to_proteins.pl text/x-perl root:root 0o755 4.4 KB
/usr/lib/transdecoder/util/index_gff3_files_by_isoform.pl text/x-perl root:root 0o755 2.0 KB
/usr/lib/transdecoder/util/misc/ root:root 0o755
/usr/lib/transdecoder/util/misc/__init__.py application/x-empty root:root 0o644 0 bytes
/usr/lib/transdecoder/util/misc/get_FP_FN_scores.py text/x-python root:root 0o755 2.2 KB
/usr/lib/transdecoder/util/misc/plot_indiv_seq_likelihood_profile.py text/x-python root:root 0o755 3.1 KB
/usr/lib/transdecoder/util/misc/rpart_scores.Rscript text/plain root:root 0o755 1.5 KB
/usr/lib/transdecoder/util/misc/select_TD_orfs.py text/x-python root:root 0o755 8.3 KB
/usr/lib/transdecoder/util/nr_ORFs_gff3.pl text/x-perl root:root 0o755 1.6 KB
/usr/lib/transdecoder/util/pfam_mpi.pbs text/x-shellscript root:root 0o755 950 bytes
/usr/lib/transdecoder/util/pfam_runner.pl text/x-perl root:root 0o755 9.0 KB
/usr/lib/transdecoder/util/refine_hexamer_scores.pl text/x-perl root:root 0o755 1.8 KB
/usr/lib/transdecoder/util/remove_eclipsed_ORFs.pl text/x-perl root:root 0o755 2.5 KB
/usr/lib/transdecoder/util/score_CDS_likelihood_all_6_frames.pl text/x-perl root:root 0o755 3.1 KB
/usr/lib/transdecoder/util/select_best_ORFs_per_transcript.pl text/x-perl root:root 0o755 9.8 KB
/usr/lib/transdecoder/util/seq_n_baseprobs_to_loglikelihood_vals.pl text/x-perl root:root 0o755 3.8 KB
/usr/lib/transdecoder/util/start_codon_refinement.pl text/x-perl root:root 0o755 9.6 KB
/usr/lib/transdecoder/util/train_start_PWM.pl text/x-perl root:root 0o755 4.3 KB
/usr/lib/transdecoder/util/uri_unescape.pl text/x-perl root:root 0o755 116 bytes
/usr/share/ root:root 0o755
/usr/share/doc/ root:root 0o755
/usr/share/doc/transdecoder/ root:root 0o755
/usr/share/doc/transdecoder/changelog.Debian.gz application/gzip root:root 0o644 1.1 KB
/usr/share/doc/transdecoder/copyright text/plain root:root 0o644 1.8 KB
/usr/share/man/ root:root 0o755
/usr/share/man/man1/ root:root 0o755
/usr/share/man/man1/TransDecoder.LongOrfs.1.gz application/gzip root:root 0o644 2.2 KB
/usr/share/man/man1/TransDecoder.Predict.1.gz application/gzip root:root 0o644 2.7 KB
/usr/bin/TransDecoder.LongOrfs root:root 0o777
/usr/bin/TransDecoder.Predict root:root 0o777
/usr/lib/transdecoder/util/__pwm_tests/pasa_assemblies.fasta.gz root:root 0o777

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