/usr/bin/TrimmomaticPE is in trimmomatic 0.36+dfsg-3.
This file is owned by root:root, with mode 0o755.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 | #!/bin/sh
PKGNAME=trimmomatic
FUNCTIONTOCALL=`basename $0`
JARDIR=/usr/share/java
JARVERSION=`ls $JARDIR/$PKGNAME-*.jar | sort | tail -n 1`
if [ "" = "$JARVERSION" ] ; then
echo "Broken installation of $PKGNAME. JAR not found."
exit 1
fi
java -classpath "$JARVERSION" org.usadellab.$PKGNAME.$FUNCTIONTOCALL "$@"
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