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<div class="section" id="changelog">
<h1>ChangeLog<a class="headerlink" href="#changelog" title="Permalink to this headline">¶</a></h1>
<div class="section" id="version-0-14-1">
<h2>Version 0.14.1<a class="headerlink" href="#version-0-14-1" title="Permalink to this headline">¶</a></h2>
<p>Fixes:</p>
<ul class="simple">
<li>Let meson build all the tasks that CMake could before</li>
<li>Check if Python is actually available in order to generate lamino kernels</li>
<li>Fix install documentation</li>
<li>Fix compilation with MacOS compilation and Python 3</li>
<li>memory-in: cast pointer to target type</li>
<li>write: fix problem with generated filenames that are not incremented</li>
</ul>
</div>
<div class="section" id="version-0-14-0">
<h2>Version 0.14.0<a class="headerlink" href="#version-0-14-0" title="Permalink to this headline">¶</a></h2>
<p>Enhancements:</p>
<ul class="simple">
<li>Support meson build system alongside CMake</li>
<li>Suppress tiff writing warnings</li>
<li>dummy-data: add random-metadata flag</li>
<li>interpolate: use GPU instead of OpenMP which is an order of magnitude faster</li>
<li>lamino: allow setting addressing mode</li>
<li>monitor: output metadata values as well</li>
<li>raw-read: split offset in pre and post offsets</li>
<li>write: add counter-start and counter-step</li>
<li>write: add minimum/maximum to control conversion</li>
<li>null: allow printing durations from timestamps</li>
</ul>
<p>Fixes:</p>
<ul class="simple">
<li>lamino: prevent volume shifting in center kernel</li>
<li>Fix #133: allow crop position with specifying dims</li>
</ul>
<p>Breaks:</p>
<ul class="simple">
<li>Replaced stdout filter with standard write module</li>
<li>write: rename quality property to jpeg-quality</li>
</ul>
<p>New filters:</p>
<ul class="simple">
<li>Add rotate filter</li>
<li>Add stitch task</li>
<li>Add interpolate-stream task</li>
<li>Add correlate-stacks task</li>
<li>Add cut task</li>
<li>Add stamp filter to print current iteration into output buffer</li>
</ul>
</div>
<div class="section" id="version-0-13-0">
<h2>Version 0.13.0<a class="headerlink" href="#version-0-13-0" title="Permalink to this headline">¶</a></h2>
<p>Enhancements:</p>
<ul class="simple">
<li>Added infrastructure to “stage” filter contributions by third parties. To
enable building it the WITH_CONTRIB option must be set explicitly to ON.</li>
</ul>
<p>Fixes:</p>
<ul class="simple">
<li>write: call conversion only once</li>
<li>read: fix segfault with start too large</li>
<li>read: fix dumping to JSON</li>
<li>Fix compilation and installation on MacOS</li>
<li>Fix #128: prevent segfault with start parameter</li>
<li>Do not compile ufo-priv.c for each task thus saving compile and link time</li>
<li>Add documentation for undocumented tasks</li>
</ul>
<p>New contributed filters by Serge X. Cohen (Synchrotron SOLEIL):</p>
<ul class="simple">
<li>Add MedMadReject median value rejection in 3D</li>
<li>Add MedMadReject2D median value rejection in 2D</li>
<li>Add Ocl1Liner to compute basic OpenCL arithmetics</li>
<li>Add StatMonitor to output stream statistics</li>
</ul>
</div>
<div class="section" id="version-0-12-0">
<h2>Version 0.12.0<a class="headerlink" href="#version-0-12-0" title="Permalink to this headline">¶</a></h2>
<p>Enhancements:</p>
<ul class="simple">
<li>Fortify source and enable large file support</li>
<li>Re-arrange filter documentation</li>
</ul>
<p>Fixes:</p>
<ul class="simple">
<li>Fix #127: use enums where possible</li>
<li>Document the filter task</li>
<li>Fix potential errors found with static analysis</li>
<li>stdin: use gsize to avoid LFS problems</li>
<li>dfi-sinc: do not call exit()</li>
<li>raw/read: fix type translation for raw-offset</li>
</ul>
<p>Breaks:</p>
<ul class="simple">
<li>metaballs: create filled balls rather than circles</li>
<li>metaballs: remove run-infinitely and fps props</li>
<li>filter: use enum instead of type-unsafe string</li>
<li>loop: rename ::count to ::number</li>
</ul>
<p>New filters:</p>
<ul class="simple">
<li>Add binarization filter</li>
<li>Add basic segmentation filter</li>
</ul>
</div>
<div class="section" id="version-0-11-1">
<h2>Version 0.11.1<a class="headerlink" href="#version-0-11-1" title="Permalink to this headline">¶</a></h2>
<p>Fixes:</p>
<ul class="simple">
<li>Fix #124: build and install oclfft optionally</li>
<li>Use OLD behaviour for CMP0046</li>
<li>Use G_MAXSIZE instead of ULLONG_MAX</li>
<li>Include oclfft deps dir only if enabled</li>
<li>filter: link FFT libs</li>
<li>ifft: remove unused/wrong imports</li>
<li>raw: do not ignore return value of fread</li>
<li>transpose: fix warning if SSE is not possible</li>
<li>Add license statements where missing</li>
<li>Link against m unconditionally</li>
</ul>
</div>
<div class="section" id="version-0-11-0">
<h2>Version 0.11.0<a class="headerlink" href="#version-0-11-0" title="Permalink to this headline">¶</a></h2>
<p>Enhancements:</p>
<ul class="simple">
<li>Add option to build Sphinx manual</li>
<li>Improved filter documentation</li>
<li>Increase robustness of OpenCL kernels by using correct type everywhere</li>
<li>Make AMD clFFT optional</li>
<li>backproject: improve performance on GTX Titan</li>
<li>rescale: allow setting absolute width and height</li>
<li>camera: allow passing properties to camera</li>
<li>camera: simplify readout mechanism</li>
<li>dummy-data: opt-in for initialization using <cite>init</cite></li>
</ul>
<p>Fixes:</p>
<ul class="simple">
<li>Link only to required dependencies</li>
<li>Do not link oclfft unconditionally</li>
<li>zeropad: fix for centers < half width</li>
<li>Fix #121: use correct exit condition</li>
<li>Set std=c99 only on C source files</li>
<li>oclfft: link against UFO</li>
<li>rescale: remove debug output</li>
<li>lamino-backproject: fix for small max workgroups</li>
</ul>
<p>Breaks:</p>
<ul class="simple">
<li>dummy-data: remove bitdepth property</li>
</ul>
<p>New filters:</p>
<ul class="simple">
<li>Add GEMM matrix multiplication using CLBlast</li>
<li>Add bin filter to bin pixel values</li>
</ul>
</div>
<div class="section" id="version-0-10-0">
<h2>Version 0.10.0<a class="headerlink" href="#version-0-10-0" title="Permalink to this headline">¶</a></h2>
<p>Enhancements:</p>
<ul class="simple">
<li>Restructured FFT-based filters to use a common code base</li>
<li>filter: Use real space ramp by default</li>
<li>crop: add <code class="docutils literal"><span class="pre">from-center</span></code> property</li>
<li>hdf5: whitelist .hdf5 and .nxs extensions</li>
</ul>
<p>Fixes:</p>
<ul class="simple">
<li>camera: do not convert 32 bit float data</li>
<li>EDF: fix problem parsing Frelon EDF data</li>
<li>Fix #117: fail gracefully if file can’t be written</li>
<li>edf reader: Allow 512-multiple header size</li>
<li>Fix reading 32 bit float raws as unsigned int</li>
</ul>
<p>Breaks:</p>
<ul class="simple">
<li>read: renamed enable-conversion → convert</li>
<li>null: renamed force-download → download</li>
</ul>
<p>New filters:</p>
<ul class="simple">
<li>Add MemoryIn generator</li>
<li>Add MemoryOut sink</li>
<li>Add stdin generator</li>
<li>Add stdout sink</li>
<li>Add laminographic backprojection</li>
<li>Add 1D stripe filter</li>
<li>Add sleep task for debugging purposes</li>
</ul>
</div>
<div class="section" id="version-0-9-0">
<h2>Version 0.9.0<a class="headerlink" href="#version-0-9-0" title="Permalink to this headline">¶</a></h2>
<p>Enhancements:</p>
<ul class="simple">
<li>backproject: reconstruct region-of-interest</li>
<li>backproject: loop unroll on GTX Titan Black</li>
<li>filter: generalize filter types</li>
<li>read: allow overriding type detection</li>
<li>read: read as many bytes as expected in raw mode</li>
<li>map-slice arbitrary number of input data</li>
<li>monitor: add print property to show data</li>
</ul>
<p>Fixes:</p>
<ul class="simple">
<li>Fix ramp filter computation and mirroring</li>
<li>Fix two dimensional batch processing of FFT and IFFT</li>
<li>Fix segfault caused by double-freeing kernel</li>
<li>opencl: fix copying dimension property</li>
<li>read: fix segfault reading big-endian .edf</li>
<li>fbp: Use number of projs to compute angle step</li>
<li>dfi: add angle-step property</li>
<li>blur: free allocated OpenCL buffers</li>
<li>slice: slice correct number of input items</li>
<li>stack: stack every [number] inputs</li>
</ul>
<p>New filters:</p>
<ul class="simple">
<li>Add flip task</li>
<li>Add clip task</li>
<li>Add loop task</li>
<li>Add refeed task</li>
<li>Add merge task</li>
<li>Add basic raw reader</li>
</ul>
</div>
<div class="section" id="version-0-8-0">
<h2>Version 0.8.0<a class="headerlink" href="#version-0-8-0" title="Permalink to this headline">¶</a></h2>
<p>Major changes:</p>
<ul class="simple">
<li>Read changed “end” property back to “number”</li>
<li>Renamed downsample filter to rescale</li>
<li>Renamed cut-roi filter to crop</li>
<li>null: added “finish” property to call clFinish()</li>
<li>filter: added Faris-Byer type filter coefficients</li>
<li>ifft: added crop-height property</li>
<li>Removed possibility to disable building plugins</li>
</ul>
<p>New filters:</p>
<ul class="simple">
<li>Add calculate task</li>
<li>Add new monitor task</li>
<li>Add edge detection filter</li>
<li>Added HDF5 reader and writer</li>
<li>Added raw writer</li>
<li>Added JPEG writer</li>
</ul>
</div>
<div class="section" id="version-0-7-0">
<h2>Version 0.7.0<a class="headerlink" href="#version-0-7-0" title="Permalink to this headline">¶</a></h2>
<p>This release breaks badly with all previous version because we renamed several
filters and properties to clean up inconsistencies.</p>
<p>Major changes include:</p>
<ul class="simple">
<li>Integration tests have been moved to core</li>
<li>writer: allow 8 and 16 bit uint output</li>
<li>reader: support Multi EDF files</li>
<li>reader: add y-step parameter</li>
<li>reader: from:to:step selection of files</li>
<li>flatfieldcorrection: add “dark-scale” property</li>
</ul>
<p>New filters:</p>
<ul class="simple">
<li>Import uPIV related filters by Alexandre Lewkowicz</li>
<li>Add pad to add zero padding</li>
<li>Add slice mapper to arrange input as a single grid</li>
<li>Add inplace flatten task for sum, min and max</li>
<li>Add interpolation task to interpolate between two streams</li>
<li>Add flatten task based on median sort</li>
<li>Add stack task to create a volume from 2D series</li>
<li>Add transpose task to rotate data</li>
<li>Add measure task to measure image metrics</li>
<li>Add PolarCoordinates task</li>
<li>Integration of UfoIR algebraic reconstruction tasks</li>
<li>Add median noise filter</li>
<li>Add slice task to cut volumes into 2D data stream</li>
<li>Add stripe removal task</li>
<li>Add phase retrieval filter</li>
</ul>
</div>
<div class="section" id="version-0-6-0">
<h2>Version 0.6.0<a class="headerlink" href="#version-0-6-0" title="Permalink to this headline">¶</a></h2>
<div class="section" id="changes">
<h3>Changes<a class="headerlink" href="#changes" title="Permalink to this headline">¶</a></h3>
<ul class="simple">
<li>Added angle offset parameter to backproject filter.</li>
<li>Fix backprojection for NaN in input</li>
<li>Fix LUT computation resulting in wrong reconstructions.</li>
<li>Install kernel files into ${datadir}/ufo as required by ufo-core 0.6.</li>
</ul>
</div>
<div class="section" id="new-filters">
<h3>New filters<a class="headerlink" href="#new-filters" title="Permalink to this headline">¶</a></h3>
<ul class="simple">
<li>“generate”: takes width, height and depth parameters as well as a number that
is produces with the specified dimensions.</li>
<li>“downsample”: reduce the size of an image by an integer</li>
</ul>
</div>
</div>
</div>
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<h3><a href="index.html">Table Of Contents</a></h3>
<ul>
<li><a class="reference internal" href="#">ChangeLog</a><ul>
<li><a class="reference internal" href="#version-0-14-1">Version 0.14.1</a></li>
<li><a class="reference internal" href="#version-0-14-0">Version 0.14.0</a></li>
<li><a class="reference internal" href="#version-0-13-0">Version 0.13.0</a></li>
<li><a class="reference internal" href="#version-0-12-0">Version 0.12.0</a></li>
<li><a class="reference internal" href="#version-0-11-1">Version 0.11.1</a></li>
<li><a class="reference internal" href="#version-0-11-0">Version 0.11.0</a></li>
<li><a class="reference internal" href="#version-0-10-0">Version 0.10.0</a></li>
<li><a class="reference internal" href="#version-0-9-0">Version 0.9.0</a></li>
<li><a class="reference internal" href="#version-0-8-0">Version 0.8.0</a></li>
<li><a class="reference internal" href="#version-0-7-0">Version 0.7.0</a></li>
<li><a class="reference internal" href="#version-0-6-0">Version 0.6.0</a><ul>
<li><a class="reference internal" href="#changes">Changes</a></li>
<li><a class="reference internal" href="#new-filters">New filters</a></li>
</ul>
</li>
</ul>
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