This file is indexed.

/usr/ is in augustus 3.3+dfsg-2build1.

This file is owned by root:root, with mode 0o755.

File Mime Type Owner Mode Size
..
/usr/bin/ root:root 0o755
/usr/bin/aln2wig application/x-sharedlib root:root 0o755 14.0 KB
/usr/bin/augustus application/x-sharedlib root:root 0o755 1.3 MB
/usr/bin/bam2hints application/x-sharedlib root:root 0o755 34.9 KB
/usr/bin/bam2wig application/x-sharedlib root:root 0o755 115.4 KB
/usr/bin/checkTargetSortedness application/x-sharedlib root:root 0o755 107.4 KB
/usr/bin/compileSpliceCands application/x-sharedlib root:root 0o755 18.0 KB
/usr/bin/etraining application/x-sharedlib root:root 0o755 1.5 MB
/usr/bin/fastBlockSearch application/x-sharedlib root:root 0o755 294.3 KB
/usr/bin/filterBam application/x-sharedlib root:root 0o755 190.2 KB
/usr/bin/homGeneMapping application/x-sharedlib root:root 0o755 138.6 KB
/usr/bin/joingenes application/x-sharedlib root:root 0o755 146.2 KB
/usr/bin/prepareAlign application/x-sharedlib root:root 0o755 34.1 KB
/usr/share/ root:root 0o755
/usr/share/augustus/ root:root 0o755
/usr/share/augustus/scripts/ root:root 0o755
/usr/share/augustus/scripts/README.autoAug text/plain root:root 0o644 12.2 KB
/usr/share/augustus/scripts/SplicedAlignment.pm text/plain root:root 0o644 12.0 KB
/usr/share/augustus/scripts/augustus2browser.pl text/x-perl root:root 0o755 3.0 KB
/usr/share/man/man1/prepareAlign.1.gz application/gzip root:root 0o644 652 bytes
/usr/share/augustus/scripts/augustus2gbrowse.pl text/x-perl root:root 0o755 389 bytes
/usr/share/augustus/scripts/autoAug.pl text/x-perl root:root 0o755 47.8 KB
/usr/share/augustus/scripts/autoAugPred.pl text/x-perl root:root 0o755 20.0 KB
/usr/share/augustus/scripts/autoAugTrain.pl text/x-perl root:root 0o755 43.1 KB
/usr/share/augustus/scripts/autoRun.pathInfo text/plain root:root 0o644 195 bytes
/usr/share/augustus/scripts/bedgraph2wig.pl text/x-perl root:root 0o755 3.3 KB
/usr/share/augustus/scripts/blat2gbrowse.pl text/x-perl root:root 0o755 4.3 KB
/usr/share/augustus/scripts/blat2hints.pl text/x-perl root:root 0o755 29.6 KB
/usr/share/augustus/scripts/block2prfl.pl text/x-perl root:root 0o755 11.0 KB
/usr/share/augustus/scripts/cegma2gff.pl text/x-perl root:root 0o755 2.2 KB
/usr/share/augustus/scripts/checkParamArchive.pl text/x-perl root:root 0o755 3.8 KB
/usr/share/augustus/scripts/checkUTR text/x-shellscript root:root 0o755 1.1 KB
/usr/share/augustus/scripts/cleanDOSfasta.pl text/x-perl root:root 0o755 535 bytes
/usr/share/augustus/scripts/clusterAndSplitGenes.pl text/x-perl root:root 0o755 7.4 KB
/usr/share/augustus/scripts/createAugustusJoblist.pl text/x-perl root:root 0o755 4.8 KB
/usr/share/augustus/scripts/del_from_prfl.pl text/x-perl root:root 0o755 3.2 KB
/usr/share/augustus/scripts/evalCGP.pl text/x-perl root:root 0o755 9.4 KB
/usr/share/augustus/scripts/eval_dualdecomp.pl text/x-perl root:root 0o755 12.9 KB
/usr/share/augustus/scripts/exonerate2hints.pl text/x-perl root:root 0o755 3.0 KB
/usr/share/augustus/scripts/exoniphyDb2hints.pl text/x-perl root:root 0o755 1.3 KB
/usr/share/augustus/scripts/extractTranscriptEnds.pl text/x-perl root:root 0o755 507 bytes
/usr/share/augustus/scripts/filter-ppx.pl text/x-perl root:root 0o755 435 bytes
/usr/share/augustus/scripts/filterGenes.pl text/x-perl root:root 0o755 850 bytes
/usr/share/augustus/scripts/filterGenesIn_mRNAname.pl text/x-perl root:root 0o755 2.1 KB
/usr/share/augustus/scripts/filterGenesOut_mRNAname.pl text/x-perl root:root 0o755 1.7 KB
/usr/share/augustus/scripts/filterInFrameStopCodons.pl text/x-perl root:root 0o755 1.1 KB
/usr/share/augustus/scripts/filterMaf.pl text/x-perl root:root 0o755 2.9 KB
/usr/share/augustus/scripts/filterPSL.pl text/x-perl root:root 0o755 17.2 KB
/usr/share/augustus/scripts/filterShrimp.pl text/x-perl root:root 0o755 4.4 KB
/usr/share/augustus/scripts/filterSpliceHints.pl text/x-perl root:root 0o755 2.0 KB
/usr/share/augustus/scripts/gbSmallDNA2gff.pl text/x-perl root:root 0o755 3.0 KB
/usr/share/augustus/scripts/gbrowse.conf text/html root:root 0o644 7.9 KB
/usr/share/augustus/scripts/gbrowseold2gff3.pl text/x-perl root:root 0o755 3.7 KB
/usr/share/augustus/scripts/getAnnoFasta.pl text/x-perl root:root 0o755 7.2 KB
/usr/share/augustus/scripts/gff2gbSmallDNA.pl text/x-perl root:root 0o755 17.2 KB
/usr/share/augustus/scripts/gff2ps_mycustom text/plain root:root 0o644 1.7 KB
/usr/share/augustus/scripts/gffGetmRNA.pl text/x-perl root:root 0o755 4.0 KB
/usr/share/augustus/scripts/gp2othergp.pl text/x-perl root:root 0o755 3.0 KB
/usr/share/augustus/scripts/gtf2bed.pl text/x-perl root:root 0o755 9.7 KB
/usr/share/augustus/scripts/gtf2gff.pl text/x-perl root:root 0o755 14.1 KB
/usr/share/augustus/scripts/gtf2gff.pl.origexit text/x-perl root:root 0o755 14.1 KB
/usr/share/augustus/scripts/hal2maf_split.pl text/x-perl root:root 0o755 12.6 KB
/usr/share/augustus/scripts/helpMod.pm text/plain root:root 0o644 8.0 KB
/usr/share/augustus/scripts/intron2exex.pl text/x-perl root:root 0o755 4.4 KB
/usr/share/augustus/scripts/joinPeptides.pl text/x-perl root:root 0o755 1.4 KB
/usr/share/augustus/scripts/join_aug_pred.pl text/x-perl root:root 0o755 8.5 KB
/usr/share/augustus/scripts/join_mult_hints.pl text/x-perl root:root 0o755 1.2 KB
/usr/share/augustus/scripts/maf2conswig.pl text/x-perl root:root 0o755 3.4 KB
/usr/share/augustus/scripts/makeMatchLists.pl text/x-perl root:root 0o755 468 bytes
/usr/share/augustus/scripts/makeUtrTrainingSet.pl text/x-perl root:root 0o755 16.4 KB
/usr/share/augustus/scripts/maskNregions.pl text/x-perl root:root 0o755 1.6 KB
/usr/share/augustus/scripts/moveParameters.pl text/x-perl root:root 0o755 2.0 KB
/usr/share/augustus/scripts/msa2prfl.pl text/x-perl root:root 0o755 20.2 KB
/usr/share/augustus/scripts/new_species.pl text/x-perl root:root 0o755 7.3 KB
/usr/share/augustus/scripts/opt_init_and_term_probs.pl text/x-perl root:root 0o755 6.9 KB
/usr/share/augustus/scripts/optimize_augustus.pl text/x-perl root:root 0o755 65.0 KB
/usr/share/augustus/scripts/parseSim4Output.pl text/x-perl root:root 0o755 3.5 KB
/usr/share/augustus/scripts/partition_gtf2gb.pl text/x-perl root:root 0o755 16.7 KB
/usr/share/augustus/scripts/pasapolyA2hints.pl text/x-perl root:root 0o755 2.1 KB
/usr/share/augustus/scripts/peptides2alternatives.pl text/x-perl root:root 0o755 3.3 KB
/usr/share/augustus/scripts/peptides2hints.pl text/x-perl root:root 0o755 6.6 KB
/usr/share/augustus/scripts/phastconsDB2hints.pl text/x-perl root:root 0o755 2.7 KB
/usr/share/augustus/scripts/polyA2hints.pl text/x-perl root:root 0o755 2.3 KB
/usr/share/augustus/scripts/prints2prfl.pl text/x-perl root:root 0o755 10.3 KB
/usr/share/augustus/scripts/pslMap.pl text/x-perl root:root 0o755 7.8 KB
/usr/share/augustus/scripts/randomSplit.pl text/x-perl root:root 0o755 1.6 KB
/usr/share/augustus/scripts/ratewig.pl text/x-perl root:root 0o755 584 bytes
/usr/share/augustus/scripts/retroDB2hints.pl text/x-perl root:root 0o755 1.9 KB
/usr/share/augustus/scripts/rmRedundantHints.pl text/x-perl root:root 0o755 1.4 KB
/usr/share/augustus/scripts/runAllSim4.pl text/x-perl root:root 0o755 723 bytes
/usr/share/augustus/scripts/samMap.pl text/x-perl root:root 0o755 4.9 KB
/usr/share/augustus/scripts/scipiogff2gff.pl text/x-perl root:root 0o755 1.1 KB
/usr/share/augustus/scripts/simpleFastaHeaders.pl text/x-perl root:root 0o755 1.2 KB
/usr/share/augustus/scripts/simplifyFastaHeaders.pl text/x-perl root:root 0o755 2.5 KB
/usr/share/augustus/scripts/splitMfasta.pl text/x-perl root:root 0o755 1.8 KB
/usr/share/augustus/scripts/split_wiggle.pl text/x-perl root:root 0o755 861 bytes
/usr/share/augustus/scripts/summarizeACGTcontent.pl text/x-perl root:root 0o755 2.1 KB
/usr/share/augustus/scripts/transMap2hints.pl text/x-perl root:root 0o755 18.8 KB
/usr/share/augustus/scripts/uniquePeptides.pl text/x-perl root:root 0o755 1.9 KB
/usr/share/augustus/scripts/utrgff2gbrowse.pl text/x-perl root:root 0o755 2.3 KB
/usr/share/augustus/scripts/webserver-results.body text/html root:root 0o644 2.6 KB
/usr/share/augustus/scripts/webserver-results.head text/html root:root 0o644 2.1 KB
/usr/share/augustus/scripts/webserver-results.tail text/html root:root 0o644 3.0 KB
/usr/share/augustus/scripts/weedMaf.pl text/x-perl root:root 0o755 1.6 KB
/usr/share/augustus/scripts/wig2hints.pl text/x-perl root:root 0o755 5.2 KB
/usr/share/augustus/scripts/wigchoose.pl text/x-perl root:root 0o755 2.8 KB
/usr/share/augustus/scripts/writeResultsPage.pl text/x-perl root:root 0o755 15.3 KB
/usr/share/augustus/scripts/yaml2gff.1.4.pl text/x-perl root:root 0o755 9.5 KB
/usr/share/doc/ root:root 0o755
/usr/share/doc/augustus/ root:root 0o755
/usr/share/doc/augustus/changelog.Debian.gz application/gzip root:root 0o644 907 bytes
/usr/share/doc/augustus/copyright text/plain root:root 0o644 3.4 KB
/usr/share/man/ root:root 0o755
/usr/share/man/man1/ root:root 0o755
/usr/share/man/man1/aln2wig.1.gz application/gzip root:root 0o644 565 bytes
/usr/share/man/man1/augustus.1.gz application/gzip root:root 0o644 1.6 KB
/usr/share/man/man1/bam2hints.1.gz application/gzip root:root 0o644 1.5 KB
/usr/share/man/man1/bam2wig.1.gz application/gzip root:root 0o644 683 bytes
/usr/share/man/man1/checkTargetSortedness.1.gz application/gzip root:root 0o644 579 bytes
/usr/share/man/man1/compileSpliceCands.1.gz application/gzip root:root 0o644 803 bytes
/usr/share/man/man1/etraining.1.gz application/gzip root:root 0o644 683 bytes
/usr/share/man/man1/fastBlockSearch.1.gz application/gzip root:root 0o644 1.3 KB
/usr/share/man/man1/filterBam.1.gz application/gzip root:root 0o644 1.7 KB
/usr/share/man/man1/homGeneMapping.1.gz application/gzip root:root 0o644 1.4 KB
/usr/share/man/man1/joingenes.1.gz application/gzip root:root 0o644 2.0 KB
/usr/share/doc/augustus/HISTORY.TXT.gz root:root 0o777