About

This package is 373.5 KB. It is available at http://archive.ubuntu.com/ubuntu/pool/universe/b/bioperl/bioperl_1.7.2-2_all.deb .

View its full control file here: debian/control.

Description

Perl tools for computational molecular biology

Relations

Package Contents

This package is indexed.

bioperl 1.7.2-2 is in ubuntu - bionic / universe. This package's architecture is: architectureless.

File Mime Type Owner Mode Size
/usr/ root:root 0o755
/usr/bin/ root:root 0o755
/usr/bin/bp_aacomp text/x-perl root:root 0o755 2.7 KB
/usr/bin/bp_biofetch_genbank_proxy text/x-perl root:root 0o755 8.1 KB
/usr/bin/bp_bioflat_index text/x-perl root:root 0o755 3.5 KB
/usr/bin/bp_biogetseq text/x-perl root:root 0o755 1.5 KB
/usr/bin/bp_blast2tree text/x-perl root:root 0o755 4.6 KB
/usr/bin/bp_bulk_load_gff text/x-perl root:root 0o755 20.4 KB
/usr/bin/bp_chaos_plot text/x-perl root:root 0o755 4.2 KB
/usr/bin/bp_classify_hits_kingdom text/x-perl root:root 0o755 7.6 KB
/usr/bin/bp_composite_LD text/x-perl root:root 0o755 2.5 KB
/usr/bin/bp_das_server text/x-perl root:root 0o755 14.6 KB
/usr/bin/bp_dbsplit text/x-perl root:root 0o755 2.6 KB
/usr/bin/bp_download_query_genbank text/x-perl root:root 0o755 3.2 KB
/usr/bin/bp_extract_feature_seq text/x-perl root:root 0o755 2.7 KB
/usr/bin/bp_fastam9_to_table text/x-perl root:root 0o755 3.8 KB
/usr/bin/bp_fast_load_gff text/x-perl root:root 0o755 15.3 KB
/usr/bin/bp_fetch text/x-perl root:root 0o755 8.4 KB
/usr/bin/bp_filter_search text/x-perl root:root 0o755 1.7 KB
/usr/bin/bp_find-blast-matches text/x-perl root:root 0o755 14.7 KB
/usr/bin/bp_flanks text/x-perl root:root 0o755 9.1 KB
/usr/bin/bp_gccalc text/x-perl root:root 0o755 3.3 KB
/usr/bin/bp_genbank2gff text/x-perl root:root 0o755 10.1 KB
/usr/bin/bp_genbank2gff3 text/x-perl root:root 0o755 78.0 KB
/usr/bin/bp_generate_histogram text/x-perl root:root 0o755 3.6 KB
/usr/bin/bp_heterogeneity_test text/x-perl root:root 0o755 4.6 KB
/usr/bin/bp_hivq text/x-perl root:root 0o755 14.8 KB
/usr/bin/bp_hmmer_to_table text/x-perl root:root 0o755 2.6 KB
/usr/bin/bp_index text/x-perl root:root 0o755 5.1 KB
/usr/bin/bp_load_gff text/x-perl root:root 0o755 6.0 KB
/usr/bin/bp_local_taxonomydb_query text/x-perl root:root 0o755 1.7 KB
/usr/bin/bp_make_mrna_protein text/x-perl root:root 0o755 3.1 KB
/usr/bin/bp_mask_by_search text/x-perl root:root 0o755 4.7 KB
/usr/bin/bp_meta_gff text/x-perl root:root 0o755 2.2 KB
/usr/bin/bp_mrtrans text/x-perl root:root 0o755 2.9 KB
/usr/bin/bp_mutate text/x-perl root:root 0o755 4.1 KB
/usr/bin/bp_netinstall text/x-perl root:root 0o755 13.5 KB
/usr/bin/bp_nexus2nh text/x-perl root:root 0o755 831 bytes
/usr/bin/bp_nrdb text/x-perl root:root 0o755 3.4 KB
/usr/bin/bp_oligo_count text/x-perl root:root 0o755 6.1 KB
/usr/bin/bp_parse_hmmsearch text/x-perl root:root 0o755 6.4 KB
/usr/bin/bp_process_gadfly text/x-perl root:root 0o755 7.1 KB
/usr/bin/bp_process_sgd text/x-perl root:root 0o755 3.6 KB
/usr/bin/bp_process_wormbase text/x-perl root:root 0o755 7.5 KB
/usr/bin/bp_query_entrez_taxa text/x-perl root:root 0o755 2.6 KB
/usr/bin/bp_remote_blast text/x-perl root:root 0o755 4.7 KB
/usr/bin/bp_revtrans-motif text/x-perl root:root 0o755 23.8 KB
/usr/bin/bp_search2alnblocks text/x-perl root:root 0o755 4.0 KB
/usr/bin/bp_search2gff text/x-perl root:root 0o755 12.1 KB
/usr/bin/bp_search2table text/x-perl root:root 0o755 2.3 KB
/usr/bin/bp_search2tribe text/x-perl root:root 0o755 2.6 KB
/usr/bin/bp_seqconvert text/x-perl root:root 0o755 2.1 KB
/usr/bin/bp_seqcut text/x-perl root:root 0o755 3.7 KB
/usr/bin/bp_seqfeature_delete text/x-perl root:root 0o755 4.6 KB
/usr/bin/bp_seqfeature_gff3 text/x-perl root:root 0o755 2.3 KB
/usr/bin/bp_seqfeature_load text/x-perl root:root 0o755 7.1 KB
/usr/bin/bp_seq_length text/x-perl root:root 0o755 1.6 KB
/usr/bin/bp_seqpart text/x-perl root:root 0o755 4.4 KB
/usr/bin/bp_seqret text/x-perl root:root 0o755 2.2 KB
/usr/bin/bp_seqretsplit text/x-perl root:root 0o755 1.4 KB
/usr/bin/bp_split_seq text/x-perl root:root 0o755 4.1 KB
/usr/bin/bp_sreformat text/x-perl root:root 0o755 5.7 KB
/usr/bin/bp_taxid4species text/x-perl root:root 0o755 3.1 KB
/usr/bin/bp_taxonomy2tree text/x-perl root:root 0o755 2.8 KB
/usr/bin/bp_translate_seq text/x-perl root:root 0o755 1.5 KB
/usr/bin/bp_tree2pag text/x-perl root:root 0o755 1.4 KB
/usr/bin/bp_unflatten_seq text/x-perl root:root 0o755 7.2 KB
/usr/share/ root:root 0o755
/usr/share/doc/ root:root 0o755
/usr/share/doc/bioperl/ root:root 0o755
/usr/share/doc/bioperl/AUTHORS.gz application/gzip root:root 0o644 2.7 KB
/usr/share/doc/bioperl/BUGS.gz application/gzip root:root 0o644 2.5 KB
/usr/share/doc/bioperl/changelog.Debian.gz root:root 0o777
/usr/share/doc/bioperl/copyright text/plain root:root 0o644 10.4 KB
/usr/share/doc/bioperl/DEPRECATED text/plain root:root 0o644 3.1 KB
/usr/share/doc/bioperl/examples/ root:root 0o755
/usr/share/doc/bioperl/examples/align/ root:root 0o755
/usr/share/doc/bioperl/examples/align/align_on_codons.pl.gz application/gzip root:root 0o644 1.9 KB
/usr/share/doc/bioperl/examples/align/aligntutorial.pl text/x-perl root:root 0o755 3.4 KB
/usr/share/doc/bioperl/examples/align/clustalw.pl.gz application/gzip root:root 0o644 3.2 KB
/usr/share/doc/bioperl/examples/align/FastAlign.pl.gz application/gzip root:root 0o644 2.6 KB
/usr/share/doc/bioperl/examples/align/simplealign.pl.gz application/gzip root:root 0o644 6.6 KB
/usr/share/doc/bioperl/examples/Bio-DB-GFF/ root:root 0o755
/usr/share/doc/bioperl/examples/Bio-DB-GFF/load_ucsc.pl.gz application/gzip root:root 0o644 3.0 KB
/usr/share/doc/bioperl/examples/bioperl.pl.gz application/gzip root:root 0o644 4.4 KB
/usr/share/doc/bioperl/examples/cluster/ root:root 0o755
/usr/share/doc/bioperl/examples/cluster/dbsnp.pl text/x-perl root:root 0o755 558 bytes
/usr/share/doc/bioperl/examples/contributed/ root:root 0o755
/usr/share/doc/bioperl/examples/contributed/nmrpdb_parse.pl.gz application/gzip root:root 0o644 1.8 KB
/usr/share/doc/bioperl/examples/contributed/prosite2perl.pl text/x-perl root:root 0o755 644 bytes
/usr/share/doc/bioperl/examples/contributed/rebase2list.pl text/x-perl root:root 0o755 549 bytes
/usr/share/doc/bioperl/examples/db/ root:root 0o755
/usr/share/doc/bioperl/examples/db/dbfetch.gz application/gzip root:root 0o644 6.3 KB
/usr/share/doc/bioperl/examples/db/est_tissue_query.pl.gz application/gzip root:root 0o644 2.1 KB
/usr/share/doc/bioperl/examples/db/gb2features.pl.gz application/gzip root:root 0o644 998 bytes
/usr/share/doc/bioperl/examples/db/getGenBank.pl text/x-perl root:root 0o755 785 bytes
/usr/share/doc/bioperl/examples/db/get_seqs.pl text/x-perl root:root 0o755 1.6 KB
/usr/share/doc/bioperl/examples/db/rfetch.pl text/x-perl root:root 0o755 1.3 KB
/usr/share/doc/bioperl/examples/db/use_registry.pl text/x-perl root:root 0o755 314 bytes
/usr/share/doc/bioperl/examples/generate_random_seq.pl text/x-perl root:root 0o755 2.4 KB
/usr/share/doc/bioperl/examples/liveseq/ root:root 0o755
/usr/share/doc/bioperl/examples/liveseq/change_gene.pl text/x-perl root:root 0o755 1.8 KB
/usr/share/doc/bioperl/examples/longorf.pl.gz application/gzip root:root 0o644 1.6 KB
/usr/share/doc/bioperl/examples/make_primers.pl.gz application/gzip root:root 0o644 1.8 KB
/usr/share/doc/bioperl/examples/popgen/ root:root 0o755
/usr/share/doc/bioperl/examples/popgen/parse_calc_stats.pl text/x-perl root:root 0o755 3.2 KB
/usr/share/doc/bioperl/examples/quality/ root:root 0o755
/usr/share/doc/bioperl/examples/quality/svgtrace.pl text/x-perl root:root 0o755 1.5 KB
/usr/share/doc/bioperl/examples/rev_and_trans.pl text/x-perl root:root 0o755 1.1 KB
/usr/share/doc/bioperl/examples/revcom_dir.pl text/x-perl root:root 0o755 2.2 KB
/usr/share/doc/bioperl/examples/root/ root:root 0o755
/usr/share/doc/bioperl/examples/root/exceptions1.pl.gz application/gzip root:root 0o644 1.6 KB
/usr/share/doc/bioperl/examples/root/exceptions2.pl.gz application/gzip root:root 0o644 1.5 KB
/usr/share/doc/bioperl/examples/root/exceptions3.pl text/x-perl root:root 0o755 1.3 KB
/usr/share/doc/bioperl/examples/root/exceptions4.pl text/x-perl root:root 0o755 3.3 KB
/usr/share/doc/bioperl/examples/root/README.gz application/gzip root:root 0o644 2.9 KB
/usr/share/doc/bioperl/examples/searchio/ root:root 0o755
/usr/share/doc/bioperl/examples/searchio/blast_example.pl.gz application/gzip root:root 0o644 1.5 KB
/usr/share/doc/bioperl/examples/searchio/custom_writer.pl text/x-perl root:root 0o755 3.1 KB
/usr/share/doc/bioperl/examples/searchio/hitwriter.pl text/x-perl root:root 0o755 4.0 KB
/usr/share/doc/bioperl/examples/searchio/hspwriter.pl text/x-perl root:root 0o755 3.1 KB
/usr/share/doc/bioperl/examples/searchio/htmlwriter.pl text/x-perl root:root 0o755 1.9 KB
/usr/share/doc/bioperl/examples/searchio/psiblast_features.pl text/x-perl root:root 0o755 1.6 KB
/usr/share/doc/bioperl/examples/searchio/psiblast_iterations.pl text/x-perl root:root 0o755 2.2 KB
/usr/share/doc/bioperl/examples/searchio/rawwriter.pl text/x-perl root:root 0o755 1.9 KB
/usr/share/doc/bioperl/examples/searchio/resultwriter.pl text/x-perl root:root 0o755 3.7 KB
/usr/share/doc/bioperl/examples/searchio/waba2gff3.pl.gz application/gzip root:root 0o644 1.9 KB
/usr/share/doc/bioperl/examples/searchio/waba2gff.pl text/x-perl root:root 0o755 779 bytes
/usr/share/doc/bioperl/examples/sirna/ root:root 0o755
/usr/share/doc/bioperl/examples/sirna/rnai_finder.cgi.gz application/gzip root:root 0o644 5.3 KB
/usr/share/doc/bioperl/examples/sirna/TAG text/plain root:root 0o644 73 bytes
/usr/share/doc/bioperl/examples/structure/ root:root 0o755
/usr/share/doc/bioperl/examples/structure/structure-io.pl text/x-perl root:root 0o755 695 bytes
/usr/share/doc/bioperl/examples/subsequence.cgi.gz application/gzip root:root 0o644 1.8 KB
/usr/share/doc/bioperl/examples/tk/ root:root 0o755
/usr/share/doc/bioperl/examples/tk/gsequence.pl.gz application/gzip root:root 0o644 8.9 KB
/usr/share/doc/bioperl/examples/tk/hitdisplay.pl text/x-perl root:root 0o755 3.3 KB
/usr/share/doc/bioperl/examples/tools/ root:root 0o755
/usr/share/doc/bioperl/examples/tools/extract_genes.pl text/x-perl root:root 0o755 3.4 KB
/usr/share/doc/bioperl/examples/tools/gb_to_gff.pl text/x-perl root:root 0o755 608 bytes
/usr/share/doc/bioperl/examples/tools/gff2ps.pl.gz application/gzip root:root 0o644 2.3 KB
/usr/share/doc/bioperl/examples/tools/parse_codeml.pl text/x-perl root:root 0o755 1.2 KB
/usr/share/doc/bioperl/examples/tools/psw.pl text/x-perl root:root 0o755 3.2 KB
/usr/share/doc/bioperl/examples/tools/reverse-translate.pl text/x-perl root:root 0o755 1.3 KB
/usr/share/doc/bioperl/examples/tools/run_genscan.pl text/x-perl root:root 0o755 2.3 KB
/usr/share/doc/bioperl/examples/tools/run_primer3.pl text/x-perl root:root 0o755 2.3 KB
/usr/share/doc/bioperl/examples/tools/seq_pattern.pl text/x-perl root:root 0o755 3.9 KB
/usr/share/doc/bioperl/examples/tools/standaloneblast.pl.gz application/gzip root:root 0o644 5.0 KB
/usr/share/doc/bioperl/examples/tree/ root:root 0o755
/usr/share/doc/bioperl/examples/tree/paup2phylip.pl text/x-perl root:root 0o755 526 bytes
/usr/share/doc/bioperl/README.md.gz application/gzip root:root 0o644 4.8 KB
/usr/share/man/ root:root 0o755
/usr/share/man/man1/ root:root 0o755
/usr/share/man/man1/bp_aacomp.1p.gz application/gzip root:root 0o644 2.4 KB
/usr/share/man/man1/bp_biofetch_genbank_proxy.1p.gz application/gzip root:root 0o644 3.1 KB
/usr/share/man/man1/bp_bioflat_index.1p.gz application/gzip root:root 0o644 2.3 KB
/usr/share/man/man1/bp_biogetseq.1p.gz application/gzip root:root 0o644 2.0 KB
/usr/share/man/man1/bp_blast2tree.1p.gz application/gzip root:root 0o644 1.8 KB
/usr/share/man/man1/bp_bulk_load_gff.1p.gz application/gzip root:root 0o644 3.6 KB
/usr/share/man/man1/bp_chaos_plot.1p.gz application/gzip root:root 0o644 2.7 KB
/usr/share/man/man1/bp_classify_hits_kingdom.1p.gz application/gzip root:root 0o644 2.7 KB
/usr/share/man/man1/bp_composite_LD.1p.gz application/gzip root:root 0o644 2.2 KB
/usr/share/man/man1/bp_dbsplit.1p.gz application/gzip root:root 0o644 2.5 KB
/usr/share/man/man1/bp_download_query_genbank.1p.gz application/gzip root:root 0o644 2.2 KB
/usr/share/man/man1/bp_extract_feature_seq.1p.gz application/gzip root:root 0o644 2.5 KB
/usr/share/man/man1/bp_fastam9_to_table.1p.gz application/gzip root:root 0o644 2.3 KB
/usr/share/man/man1/bp_fast_load_gff.1p.gz application/gzip root:root 0o644 3.5 KB
/usr/share/man/man1/bp_fetch.1p.gz application/gzip root:root 0o644 3.3 KB
/usr/share/man/man1/bp_filter_search.1p.gz application/gzip root:root 0o644 2.3 KB
/usr/share/man/man1/bp_find-blast-matches.1p.gz application/gzip root:root 0o644 3.0 KB
/usr/share/man/man1/bp_flanks.1p.gz application/gzip root:root 0o644 3.4 KB
/usr/share/man/man1/bp_gccalc.1p.gz application/gzip root:root 0o644 2.4 KB
/usr/share/man/man1/bp_genbank2gff.1p.gz application/gzip root:root 0o644 2.8 KB
/usr/share/man/man1/bp_genbank2gff3.1p.gz application/gzip root:root 0o644 5.1 KB
/usr/share/man/man1/bp_generate_histogram.1p.gz application/gzip root:root 0o644 2.3 KB
/usr/share/man/man1/bp_heterogeneity_test.1p.gz application/gzip root:root 0o644 2.3 KB
/usr/share/man/man1/bp_hivq.1p.gz application/gzip root:root 0o644 3.7 KB
/usr/share/man/man1/bp_hmmer_to_table.1p.gz application/gzip root:root 0o644 2.2 KB
/usr/share/man/man1/bp_index.1p.gz application/gzip root:root 0o644 3.1 KB
/usr/share/man/man1/bp_load_gff.1p.gz application/gzip root:root 0o644 3.3 KB
/usr/share/man/man1/bp_local_taxonomydb_query.1p.gz application/gzip root:root 0o644 2.1 KB
/usr/share/man/man1/bp_make_mrna_protein.1p.gz application/gzip root:root 0o644 2.2 KB
/usr/share/man/man1/bp_mask_by_search.1p.gz application/gzip root:root 0o644 2.7 KB
/usr/share/man/man1/bp_meta_gff.1p.gz application/gzip root:root 0o644 2.4 KB
/usr/share/man/man1/bp_mrtrans.1p.gz application/gzip root:root 0o644 2.1 KB
/usr/share/man/man1/bp_mutate.1p.gz application/gzip root:root 0o644 2.4 KB
/usr/share/man/man1/bp_netinstall.1p.gz application/gzip root:root 0o644 2.3 KB
/usr/share/man/man1/bp_nexus2nh.1p.gz application/gzip root:root 0o644 1.9 KB
/usr/share/man/man1/bp_nrdb.1p.gz application/gzip root:root 0o644 2.2 KB
/usr/share/man/man1/bp_oligo_count.1p.gz application/gzip root:root 0o644 2.6 KB
/usr/share/man/man1/bp_parse_hmmsearch.1p.gz application/gzip root:root 0o644 2.3 KB
/usr/share/man/man1/bp_process_gadfly.1p.gz application/gzip root:root 0o644 2.9 KB
/usr/share/man/man1/bp_process_sgd.1p.gz application/gzip root:root 0o644 2.3 KB
/usr/share/man/man1/bp_process_wormbase.1p.gz application/gzip root:root 0o644 2.6 KB
/usr/share/man/man1/bp_query_entrez_taxa.1p.gz application/gzip root:root 0o644 2.1 KB
/usr/share/man/man1/bp_remote_blast.1p.gz application/gzip root:root 0o644 2.3 KB
/usr/share/man/man1/bp_revtrans-motif.1p.gz application/gzip root:root 0o644 2.7 KB
/usr/share/man/man1/bp_search2alnblocks.1p.gz application/gzip root:root 0o644 2.5 KB
/usr/share/man/man1/bp_search2gff.1p.gz application/gzip root:root 0o644 3.1 KB
/usr/share/man/man1/bp_search2table.1p.gz application/gzip root:root 0o644 2.2 KB
/usr/share/man/man1/bp_search2tribe.1p.gz application/gzip root:root 0o644 2.4 KB
/usr/share/man/man1/bp_seqconvert.1p.gz application/gzip root:root 0o644 2.3 KB
/usr/share/man/man1/bp_seqcut.1p.gz application/gzip root:root 0o644 2.6 KB
/usr/share/man/man1/bp_seqfeature_load.1p.gz application/gzip root:root 0o644 3.3 KB
/usr/share/man/man1/bp_seq_length.1p.gz application/gzip root:root 0o644 2.3 KB
/usr/share/man/man1/bp_seqpart.1p.gz application/gzip root:root 0o644 2.7 KB
/usr/share/man/man1/bp_seqret.1p.gz application/gzip root:root 0o644 2.1 KB
/usr/share/man/man1/bp_seqretsplit.1p.gz application/gzip root:root 0o644 2.4 KB
/usr/share/man/man1/bp_split_seq.1p.gz application/gzip root:root 0o644 2.4 KB
/usr/share/man/man1/bp_sreformat.1p.gz application/gzip root:root 0o644 2.3 KB
/usr/share/man/man1/bp_taxid4species.1p.gz application/gzip root:root 0o644 2.3 KB
/usr/share/man/man1/bp_taxonomy2tree.1p.gz application/gzip root:root 0o644 2.3 KB
/usr/share/man/man1/bp_translate_seq.1p.gz application/gzip root:root 0o644 2.2 KB
/usr/share/man/man1/bp_tree2pag.1p.gz application/gzip root:root 0o644 2.0 KB
/usr/share/man/man1/bp_unflatten_seq.1p.gz application/gzip root:root 0o644 3.7 KB