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<title>DOMALIGN Applications</title>
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<h1>DOMALIGN Applications</h1>
<hr>
The DOMALIGN programs were developed by Jon Ison and colleagues at
MRC HGMP for their protein domain research. They are included as an
EMBASSY package as a work in progress.
<p>
<h3><A NAME="domalign">Applications</A> in the <a
href="ftp://emboss.open-bio.org/pub/EMBOSS/">current domalign release</a></h3>
<table border cellpadding=4 bgcolor="#FFFFF0">
<tr>
<th>Program name</th>
<th>Description</th>
</tr>
<tr>
<td><a href="allversusall.html">allversusall</a></td>
<td>
Sequence similarity data from all-versus-all comparison
</td>
</tr>
<tr>
<td><a href="domainalign.html">domainalign</a></td>
<td>
Generate alignments (DAF file) for nodes in a DCF file
</td>
</tr>
<tr>
<td><a href="domainrep.html">domainrep</a></td>
<td>
Reorder DCF file to identify representative structures
</td>
</tr>
<tr>
<td><a href="seqalign.html">seqalign</a></td>
<td>
Extend alignments (DAF file) with sequences (DHF file)
</td>
</tr>
</table>
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